- For functions first_isolate, EUCAST_rules the antibiotic column names are case-insensitive

- Functions `first_isolate`, `EUCAST_rules` and `rsi_predict` supports tidyverse-like evaluation of parameters (no need to quote columns them anymore)
- Functions `clipboard_import` and `clipboard_export` as helper functions to quickly copy and paste from/to software like Excel and SPSS
- Renamed dataset `bactlist` to `microorganisms`

man/microorganisms.Rd

@@ -0,0 +1,34 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/data.R
+\docType{data}
+\name{microorganisms}
+\alias{microorganisms}
+\title{Dataset with ~2500 microorganisms}
+\format{A data.frame with 2507 observations and 12 variables:
+\describe{
+  \item{\code{bactid}}{ID of microorganism}
+  \item{\code{bactsys}}{Bactsyscode of microorganism}
+  \item{\code{family}}{Family name of microorganism}
+  \item{\code{genus}}{Genus name of microorganism, like \code{"Echerichia"}}
+  \item{\code{species}}{Species name of microorganism, like \code{"coli"}}
+  \item{\code{subspecies}}{Subspecies name of bio-/serovar of microorganism, like \code{"EHEC"}}
+  \item{\code{fullname}}{Full name, like \code{"Echerichia coli (EHEC)"}}
+  \item{\code{type}}{Type of microorganism, like \code{"Bacteria"} and \code{"Fungus/yeast"}}
+  \item{\code{gramstain}}{Gram of microorganism, like \code{"Negative rods"}}
+  \item{\code{aerobic}}{Logical whether bacteria is aerobic}
+  \item{\code{type_nl}}{Type of microorganism in Dutch, like \code{"Bacterie"} and \code{"Schimmel/gist"}}
+  \item{\code{gramstain_nl}}{Gram of microorganism in Dutch, like \code{"Negatieve staven"}}
+}}
+\source{
+MOLIS (LIS of Certe) - \url{https://www.certe.nl}
+}
+\usage{
+microorganisms
+}
+\description{
+A dataset containing 2500 microorganisms. MO codes of the UMCG can be looked up using \code{\link{microorganisms.umcg}}.
+}
+\seealso{
+\code{\link{guess_bactid}} \code{\link{antibiotics}} \code{\link{microorganisms.umcg}}
+}
+\keyword{datasets}