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@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9021</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9022</small>
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@ -402,18 +402,18 @@ names or codes, this would have worked exactly the same way:</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co">#&gt; rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co">#&gt; 1 R I I I I S</span></span>
<span><span class="co">#&gt; 2 S S S R R S</span></span>
<span><span class="co">#&gt; 3 I S I I I I</span></span>
<span><span class="co">#&gt; 4 S I R S I R</span></span>
<span><span class="co">#&gt; 5 R I S R R S</span></span>
<span><span class="co">#&gt; 6 S I I S I I</span></span>
<span><span class="co">#&gt; 1 R R R S S S</span></span>
<span><span class="co">#&gt; 2 S R S S R S</span></span>
<span><span class="co">#&gt; 3 S R I R I I</span></span>
<span><span class="co">#&gt; 4 R I S I S R</span></span>
<span><span class="co">#&gt; 5 S I R I I S</span></span>
<span><span class="co">#&gt; 6 R R I S S I</span></span>
<span><span class="co">#&gt; kanamycin</span></span>
<span><span class="co">#&gt; 1 R</span></span>
<span><span class="co">#&gt; 2 S</span></span>
<span><span class="co">#&gt; 1 I</span></span>
<span><span class="co">#&gt; 2 I</span></span>
<span><span class="co">#&gt; 3 I</span></span>
<span><span class="co">#&gt; 4 R</span></span>
<span><span class="co">#&gt; 5 I</span></span>
<span><span class="co">#&gt; 4 S</span></span>
<span><span class="co">#&gt; 5 S</span></span>
<span><span class="co">#&gt; 6 R</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can
use:</p>
@ -455,40 +455,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3250</td>
<td align="right">65.00%</td>
<td align="right">3250</td>
<td align="right">65.00%</td>
<td align="right">3180</td>
<td align="right">63.60%</td>
<td align="right">3180</td>
<td align="right">63.60%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">948</td>
<td align="right">18.96%</td>
<td align="right">4198</td>
<td align="right">83.96%</td>
<td align="right">1032</td>
<td align="right">20.64%</td>
<td align="right">4212</td>
<td align="right">84.24%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">455</td>
<td align="right">9.10%</td>
<td align="right">4653</td>
<td align="right">93.06%</td>
<td align="right">462</td>
<td align="right">9.24%</td>
<td align="right">4674</td>
<td align="right">93.48%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">241</td>
<td align="right">4.82%</td>
<td align="right">4894</td>
<td align="right">97.88%</td>
<td align="right">226</td>
<td align="right">4.52%</td>
<td align="right">4900</td>
<td align="right">98.00%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">106</td>
<td align="right">2.12%</td>
<td align="right">100</td>
<td align="right">2.00%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>