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@ -10,7 +10,7 @@
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9021</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.0.0.9022</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -210,41 +210,42 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] <=0.001 0.125 0.002 0.25 0.5 128 0.002 16 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.125 0.005 2 1 0.125 0.005 >=256 >=256 >=256 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] <=0.001 0.125 4 0.0625 0.002 32 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 128 0.01 0.25 256 0.002 <=0.001 0.025 0.005 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 2 256 0.01 4 8 64 4 0.002 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.0625 128 0.025 2 1 <=0.001 <=0.001</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 18 16 49 48 27 18 45 13 7 40 27 50 41 29 45 31 23 18 25 46 40 20 34 20 34</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 34 24 46 29 29 7 27 50 49 28 49 6 14 35 40 14 33 47 37 25 28 41 6 48 47</span>
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<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S I R I S I R R R R S R I R R S S S I I R I R R R</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R I R S S R I R I S I I S R R I I R S I S I R S I</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.01 0.001 >=128 2 0.5 4 1 8 0.5 1 0.001 0.125</span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 2 2 0.002 64 16 0.002 8 0.002 4 >=128 0.025 0.125</span>
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<span class="r-out co"><span class="r-pr">#></span> [25] >=128</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.002 0.25 0.25 4 0.025 8 128 0.025 32 0.002 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.005 64 0.002 4 0.01 4 0.001 0.01 4 0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.005 4 2 1 128 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 2 1 1 4 1 32 4 4 8 2 16 4 16 8 16 4 2 16 1 16 8 2 1 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 4 4 2 >=16 >=16 2 4 8 8 >=16 8 2 2 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 2 4 2 >=16 2 2 >=16 <=1 2 4 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] >=4 >=4 0.5 >=4 0.0625 2 0.0625 1 0.25 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.125 1 >=4 1 0.25 1 >=4 0.25 >=4 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.125 0.5 0.125 0.5 >=4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.25 2 1 0.25 4 1 0.25 <=0.125 <=0.125</span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.25 4 4 <=0.125 4 0.25 1 <=0.125 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 2 2 0.25 0.25 4 <=0.125 1 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 45 40 47 40 41 48 35 45 42 27 44 17 17 30 8 8 44 30 26 49 50 35 44 37 43</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 44 39 37 49 11 40 17 49 10 37 15 20 22 47 41 29 39 15 35 49 11 37 40 41 44</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 17 17 11 11 17 16 15 13 13 11 15 12 15 12 14 13 14 14 14 14 15 17 12 15 17</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 15 15 12 14 17 16 15 11 14 16 15 14 14 12 12 12 15 13 16 12 15 12 14 15</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 20 21 27 15 26 21 25 23 27 25 15 19 26 20 25 20 25 22 19 16 25 20 24 17 22</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 24 15 15 22 27 15 20 17 22 22 15 18 21 17 21 25 20 24 17 17 27 19 19 26 16</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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