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dr. M.S. (Matthijs) Berends 2023-03-20 21:59:50 +01:00
parent c28cfa3a77
commit 549790c2a6
5 changed files with 6 additions and 6 deletions
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4
DESCRIPTION
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@ -1,6 +1,6 @@
Package: AMR Package: AMR
Version: 2.0.0.9003 Version: 2.0.0.9004
Date: 2023-03-16 Date: 2023-03-20
Title: Antimicrobial Resistance Data Analysis Title: Antimicrobial Resistance Data Analysis
Description: Functions to simplify and standardise antimicrobial resistance (AMR) Description: Functions to simplify and standardise antimicrobial resistance (AMR)
data analysis and to work with microbial and antimicrobial properties by data analysis and to work with microbial and antimicrobial properties by

2
NEWS.md
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@ -1,4 +1,4 @@
# AMR 2.0.0.9003 # AMR 2.0.0.9004
## Changed ## Changed
* formatting fix for `sir_interpretation_history()` * formatting fix for `sir_interpretation_history()`

2
R/antibiogram.R
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@ -224,7 +224,7 @@
#' # in an Rmd file, you would just need to return `ureido` in a chunk, #' # in an Rmd file, you would just need to return `ureido` in a chunk,
#' # but to be explicit here: #' # but to be explicit here:
#' if (requireNamespace("knitr")) { #' if (requireNamespace("knitr")) {
#' knitr::knit_print(ureido) #' cat(knitr::knit_print(ureido))
#' } #' }
#' #'
#' #'

2
R/italicise_taxonomy.R
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@ -57,7 +57,7 @@ italicise_taxonomy <- function(string, type = c("markdown", "ansi")) {
before <- "*" before <- "*"
after <- "*" after <- "*"
} else if (type == "ansi") { } else if (type == "ansi") {
if (!has_colour()) { if (!has_colour() && !identical(Sys.getenv("IN_PKGDOWN"), "true")) {
return(string) return(string)
} }
before <- "\033[3m" before <- "\033[3m"

2
man/antibiogram.Rd
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@ -247,7 +247,7 @@ ureido <- antibiogram(example_isolates,
# in an Rmd file, you would just need to return `ureido` in a chunk, # in an Rmd file, you would just need to return `ureido` in a chunk,
# but to be explicit here: # but to be explicit here:
if (requireNamespace("knitr")) { if (requireNamespace("knitr")) {
knitr::knit_print(ureido) cat(knitr::knit_print(ureido))
} }