diff --git a/DESCRIPTION b/DESCRIPTION index 98f08d0f..9593c587 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,5 +1,5 @@ Package: AMR -Version: 0.8.0.9027 +Version: 0.8.0.9028 Date: 2019-11-10 Title: Antimicrobial Resistance Analysis Authors@R: c( diff --git a/NEWS.md b/NEWS.md index 1da4a29d..c914fb97 100755 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -# AMR 0.8.0.9027 +# AMR 0.8.0.9028 Last updated: 10-Nov-2019 ### New diff --git a/R/first_isolate.R b/R/first_isolate.R index 95dafc14..50f15d84 100755 --- a/R/first_isolate.R +++ b/R/first_isolate.R @@ -102,13 +102,13 @@ #' A <- example_isolates %>% #' group_by(hospital_id) %>% #' summarise(count = n_rsi(GEN), # gentamicin availability -#' resistance = portion_IR(GEN)) # gentamicin resistance +#' resistance = resistance(GEN)) # gentamicin resistance #' #' B <- example_isolates %>% #' filter_first_weighted_isolate() %>% # the 1st isolate filter #' group_by(hospital_id) %>% #' summarise(count = n_rsi(GEN), # gentamicin availability -#' resistance = portion_IR(GEN)) # gentamicin resistance +#' resistance = resistance(GEN)) # gentamicin resistance #' #' # Have a look at A and B. #' # B is more reliable because every isolate is only counted once. diff --git a/docs/404.html b/docs/404.html index 85a60953..5e001f66 100644 --- a/docs/404.html +++ b/docs/404.html @@ -84,7 +84,7 @@ AMR (for R) - 0.8.0.9027 + 0.8.0.9028 diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html index ca0d66d8..442587e6 100644 --- a/docs/LICENSE-text.html +++ b/docs/LICENSE-text.html @@ -84,7 +84,7 @@ AMR (for R) - 0.8.0.9027 + 0.8.0.9028 diff --git a/docs/articles/index.html b/docs/articles/index.html index 7e9ed2fe..7e55becc 100644 --- a/docs/articles/index.html +++ b/docs/articles/index.html @@ -84,7 +84,7 @@ AMR (for R) - 0.8.0.9027 + 0.8.0.9028 diff --git a/docs/authors.html b/docs/authors.html index a2bec599..d5f72882 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -84,7 +84,7 @@ AMR (for R) - 0.8.0.9027 + 0.8.0.9028 diff --git a/docs/index.html b/docs/index.html index fe629e9a..0a93fb99 100644 --- a/docs/index.html +++ b/docs/index.html @@ -45,7 +45,7 @@ AMR (for R) - 0.8.0.9027 + 0.8.0.9028 diff --git a/docs/news/index.html b/docs/news/index.html index 75f45c41..f0a8b2a3 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -84,7 +84,7 @@ AMR (for R) - 0.8.0.9027 + 0.8.0.9028 @@ -231,9 +231,9 @@ -
+

-AMR 0.8.0.9027 Unreleased +AMR 0.8.0.9028 Unreleased

Last updated: 10-Nov-2019

@@ -1337,7 +1337,7 @@ Using as.mo(..., allow_uncertain = 3)

Contents

    -
  • 0.8.0.9027
    • +
  • 0.8.0.9028
  • 0.8.0
  • 0.7.1
  • 0.7.0
    • diff --git a/docs/reference/first_isolate.html b/docs/reference/first_isolate.html index e4078107..84a79d78 100644 --- a/docs/reference/first_isolate.html +++ b/docs/reference/first_isolate.html @@ -85,7 +85,7 @@ AMR (for R) - 0.8.0.9027 + 0.8.0.9028
@@ -395,13 +395,13 @@ To conduct an analysis of antimicrobial resistance, you should only include the A <- example_isolates %>% group_by(hospital_id) %>% summarise(count = n_rsi(GEN), # gentamicin availability - resistance = portion_IR(GEN)) # gentamicin resistance + resistance = resistance(GEN)) # gentamicin resistance B <- example_isolates %>% filter_first_weighted_isolate() %>% # the 1st isolate filter group_by(hospital_id) %>% summarise(count = n_rsi(GEN), # gentamicin availability - resistance = portion_IR(GEN)) # gentamicin resistance + resistance = resistance(GEN)) # gentamicin resistance # Have a look at A and B. # B is more reliable because every isolate is only counted once. diff --git a/docs/reference/index.html b/docs/reference/index.html index b42fb68d..75148734 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -84,7 +84,7 @@ AMR (for R) - 0.8.0.9027 + 0.8.0.9028
diff --git a/man/first_isolate.Rd b/man/first_isolate.Rd index 8cf2639b..6ef7bf83 100755 --- a/man/first_isolate.Rd +++ b/man/first_isolate.Rd @@ -129,13 +129,13 @@ example_isolates \%>\% A <- example_isolates \%>\% group_by(hospital_id) \%>\% summarise(count = n_rsi(GEN), # gentamicin availability - resistance = portion_IR(GEN)) # gentamicin resistance + resistance = resistance(GEN)) # gentamicin resistance B <- example_isolates \%>\% filter_first_weighted_isolate() \%>\% # the 1st isolate filter group_by(hospital_id) \%>\% summarise(count = n_rsi(GEN), # gentamicin availability - resistance = portion_IR(GEN)) # gentamicin resistance + resistance = resistance(GEN)) # gentamicin resistance # Have a look at A and B. # B is more reliable because every isolate is only counted once.