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v1.6.0

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dr. M.S. (Matthijs) Berends
2021-03-15 07:23:21 +01:00
parent 4e0a9533ad
commit 551f99dc8f
39 changed files with 106 additions and 99 deletions
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2
R/ab_class_selectors.R
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@ -27,7 +27,7 @@
#'
#' These functions help to select the columns of antibiotics that are of a specific antibiotic class, without the need to define the columns or antibiotic abbreviations. \strong{\Sexpr{ifelse(as.double(R.Version()$major) + (as.double(R.Version()$minor) / 10) < 3.2, paste0("NOTE: THESE FUNCTIONS DO NOT WORK ON YOUR CURRENT R VERSION. These functions require R version 3.2 or later - you have ", R.version.string, "."), "")}}
#' @inheritSection lifecycle Stable Lifecycle
#' @param only_rsi_columns a logical to indicate whether only columns of class [`<rsi>`]([rsi]) must be selected (defaults to `FALSE`)
#' @param only_rsi_columns a logical to indicate whether only columns of class `<rsi>` must be selected (defaults to `FALSE`), see [as.rsi()]
#' @inheritParams filter_ab_class
#' @details \strong{\Sexpr{ifelse(as.double(R.Version()$major) + (as.double(R.Version()$minor) / 10) < 3.2, paste0("NOTE: THESE FUNCTIONS DO NOT WORK ON YOUR CURRENT R VERSION. These functions require R version 3.2 or later - you have ", R.version.string, "."), "")}}
#'

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R/ggplot_pca.R
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@ -57,7 +57,7 @@
#' 4. Added total amount of explained variance as a caption in the plot
#' 5. Cleaned all syntax based on the `lintr` package, fixed grammatical errors and added integrity checks
#' 6. Updated documentation
#' @details The colours for labels and points can be changed by adding another scale layer for colour, like `scale_colour_viridis_d()` or `scale_colour_brewer()`.
#' @details The colours for labels and points can be changed by adding another scale layer for colour, such as `scale_colour_viridis_d()` and `scale_colour_brewer()`.
#' @rdname ggplot_pca
#' @export
#' @examples