P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-09 22:22:03 +02:00
Code Releases Activity

v1.6.0

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2021-03-15 07:23:21 +01:00
parent 4e0a9533ad
commit 551f99dc8f
39 changed files with 106 additions and 99 deletions
Download Patch File Download Diff File Expand all files Collapse all files

2
man/antibiotic_class_selectors.Rd
View File

@ -52,7 +52,7 @@ tetracyclines(only_rsi_columns = FALSE)
\arguments{
\item{ab_class}{an antimicrobial class, like \code{"carbapenems"}. The columns \code{group}, \code{atc_group1} and \code{atc_group2} of the \link{antibiotics} data set will be searched (case-insensitive) for this value.}
\item{only_rsi_columns}{a logical to indicate whether only columns of class \href{[rsi]}{\verb{<rsi>}} must be selected (defaults to \code{FALSE})}
\item{only_rsi_columns}{a logical to indicate whether only columns of class \verb{<rsi>} must be selected (defaults to \code{FALSE}), see \code{\link[=as.rsi]{as.rsi()}}}
}
\description{
These functions help to select the columns of antibiotics that are of a specific antibiotic class, without the need to define the columns or antibiotic abbreviations. \strong{\Sexpr{ifelse(as.double(R.Version()$major) + (as.double(R.Version()$minor) / 10) < 3.2, paste0("NOTE: THESE FUNCTIONS DO NOT WORK ON YOUR CURRENT R VERSION. These functions require R version 3.2 or later - you have ", R.version.string, "."), "")}}

2
man/ggplot_pca.Rd
View File

@ -106,7 +106,7 @@ ggplot_pca(
Produces a \code{ggplot2} variant of a so-called \href{https://en.wikipedia.org/wiki/Biplot}{biplot} for PCA (principal component analysis), but is more flexible and more appealing than the base \R \code{\link[=biplot]{biplot()}} function.
}
\details{
The colours for labels and points can be changed by adding another scale layer for colour, like \code{scale_colour_viridis_d()} or \code{scale_colour_brewer()}.
The colours for labels and points can be changed by adding another scale layer for colour, such as \code{scale_colour_viridis_d()} and \code{scale_colour_brewer()}.
}
\section{Stable Lifecycle}{