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(v1.7.1.9067) Support for Swedish and Russian

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dr. M.S. (Matthijs) Berends
2021-12-12 09:42:03 +01:00
parent 5b5f70a103
commit 56f1ce328a
81 changed files with 1588 additions and 530 deletions
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6
docs/reference/count.html
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@ -18,7 +18,7 @@ count_resistant() should be used to count resistant isolates, count_susceptible(
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9062</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9067</span>
</span>
</div>
@ -184,7 +184,7 @@ count_resistant() should be used to count resistant isolates, count_susceptible(
<span class="fu">count_df</span><span class="op">(</span>
<span class="va">data</span>,
translate_ab <span class="op">=</span> <span class="st">"name"</span>,
language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>,
language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>,
combine_SI <span class="op">=</span> <span class="cn">TRUE</span>,
combine_IR <span class="op">=</span> <span class="cn">FALSE</span>
<span class="op">)</span></code></pre></div></div>
@ -200,7 +200,7 @@ count_resistant() should be used to count resistant isolates, count_susceptible(
<dt>translate_ab</dt>
<dd><p>a column name of the <a href="antibiotics.html">antibiotics</a> data set to translate the antibiotic abbreviations to, using <code><a href="ab_property.html">ab_property()</a></code></p></dd>
<dt>language</dt>
<dd><p>language of the returned text, defaults to system language (see <code><a href="translate.html">get_locale()</a></code>) and can also be set with <code>getOption("AMR_locale")</code>. Use <code>language = NULL</code> or <code>language = ""</code> to prevent translation.</p></dd>
<dd><p>language of the returned text, defaults to system language (see <code><a href="translate.html">get_AMR_locale()</a></code>) and can also be set with <code>getOption("AMR_locale")</code>. Use <code>language = NULL</code> or <code>language = ""</code> to prevent translation.</p></dd>
<dt>combine_SI</dt>
<dd><p>a <a href="https://rdrr.io/r/base/logical.html" class="external-link">logical</a> to indicate whether all values of S and I must be merged into one, so the output only consists of S+I vs. R (susceptible vs. resistant). This used to be the argument <code>combine_IR</code>, but this now follows the redefinition by EUCAST about the interpretation of I (increased exposure) in 2019, see section 'Interpretation of S, I and R' below. Default is <code>TRUE</code>.</p></dd>
<dt>combine_IR</dt>