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(v1.7.1.9067) Support for Swedish and Russian

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dr. M.S. (Matthijs) Berends 2021-12-12 09:42:03 +01:00
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4
DESCRIPTION
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@ -1,6 +1,6 @@
Package: AMR Package: AMR
Version: 1.7.1.9066 Version: 1.7.1.9067
Date: 2021-12-11 Date: 2021-12-12
Title: Antimicrobial Resistance Data Analysis Title: Antimicrobial Resistance Data Analysis
Description: Functions to simplify and standardise antimicrobial resistance (AMR) Description: Functions to simplify and standardise antimicrobial resistance (AMR)
data analysis and to work with microbial and antimicrobial properties by data analysis and to work with microbial and antimicrobial properties by

2
NAMESPACE
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@ -230,8 +230,8 @@ export(fluoroquinolones)
export(full_join_microorganisms) export(full_join_microorganisms)
export(g.test) export(g.test)
export(geom_rsi) export(geom_rsi)
export(get_AMR_locale)
export(get_episode) export(get_episode)
export(get_locale)
export(get_mo_source) export(get_mo_source)
export(ggplot_pca) export(ggplot_pca)
export(ggplot_rsi) export(ggplot_rsi)

9
NEWS.md
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@ -1,14 +1,15 @@
# `AMR` 1.7.1.9066 # `AMR` 1.7.1.9067
## <small>Last updated: 11 December 2021</small> ## <small>Last updated: 12 December 2021</small>
### Breaking changes ### Breaking changes
* Removed `p_symbol()` and all `filter_*()` functions (except for `filter_first_isolate()`), which were all deprecated in a previous package version * Removed `p_symbol()` and all `filter_*()` functions (except for `filter_first_isolate()`), which were all deprecated in a previous package version
* Removed the `key_antibiotics()` and `key_antibiotics_equal()` functions, which were deprecated and superseded by `key_antimicrobials()` and `antimicrobials_equal()` * Removed the `key_antibiotics()` and `key_antibiotics_equal()` functions, which were deprecated and superseded by `key_antimicrobials()` and `antimicrobials_equal()`
* Removed all previously implemented `ggplot2::ggplot()` generics for classes `<mic>`, `<disk>`, `<rsi>` and `<resistance_predict>` as they did not follow the `ggplot2` logic. They were replaced with `ggplot2::autoplot()` generics. * Removed all previously implemented `ggplot2::ggplot()` generics for classes `<mic>`, `<disk>`, `<rsi>` and `<resistance_predict>` as they did not follow the `ggplot2` logic. They were replaced with `ggplot2::autoplot()` generics.
* Renamed function `get_locale()` to `get_AMR_locale()` to prevent conflicts with other packages
### New ### New
* Support for EUCAST Intrinsic Resistance and Unusual Phenotypes v3.3 (October 2021). This is now the default EUCAST guideline in the package (all older guidelines are still available) for `eucast_rules()`, `mo_intrinsic_resistant()` and `mdro()`. The `intrinsic_resistant` data set was also updated accordingly. * Support for EUCAST Intrinsic Resistance and Unusual Phenotypes v3.3 (October 2021). This is now the default EUCAST guideline in the package (all older guidelines are still available) for `eucast_rules()`, `mo_intrinsic_resistant()` and `mdro()`. The `intrinsic_resistant` data set was also updated accordingly.
* Support for Danish, and also added missing translations of all antimicrobial drugs in Italian, French and Portuguese * Support for all antimicrobial drug (group) names and colloquial microorganism names in Danish, Dutch, English, French, German, Italian, Portuguese, Russian, Spanish and Swedish
* Function `set_ab_names()` to rename data set columns that resemble antimicrobial drugs. This allows for quickly renaming columns to official names, ATC codes, etc. Its second argument can be a tidyverse way of selecting: * Function `set_ab_names()` to rename data set columns that resemble antimicrobial drugs. This allows for quickly renaming columns to official names, ATC codes, etc. Its second argument can be a tidyverse way of selecting:
```r ```r
example_isolates %>% set_ab_names(where(is.rsi)) example_isolates %>% set_ab_names(where(is.rsi))
@ -50,7 +51,7 @@
* When printing a tibble with any old MO code, a warning will be thrown that old codes should be updated using `as.mo()` * When printing a tibble with any old MO code, a warning will be thrown that old codes should be updated using `as.mo()`
* Improved automatic column selector when `col_*` arguments are left blank, e.g. in `first_isolate()` * Improved automatic column selector when `col_*` arguments are left blank, e.g. in `first_isolate()`
* The right input types for `random_mic()`, `random_disk()` and `random_rsi()` are now enforced * The right input types for `random_mic()`, `random_disk()` and `random_rsi()` are now enforced
* `as.rsi()` has an improved algorithm and can now also correct for textual input (such as "Susceptible", "Resistant") in Danish, Dutch, English, French, German, Italian, Portuguese and Spanish * `as.rsi()` has an improved algorithm and can now also correct for textual input (such as "Susceptible", "Resistant") in all supported languages
* `as.mic()` has an improved algorithm * `as.mic()` has an improved algorithm
* When warnings are thrown because of too few isolates in any `count_*()`, `proportion_*()` function (or `resistant()` or `susceptible()`), the `dplyr` group will be shown, if available * When warnings are thrown because of too few isolates in any `count_*()`, `proportion_*()` function (or `resistant()` or `susceptible()`), the `dplyr` group will be shown, if available
* Fix for legends created with `scale_rsi_colours()` when using `ggplot2` v3.3.4 or higher (this is ggplot2 bug 4511, soon to be fixed) * Fix for legends created with `scale_rsi_colours()` when using `ggplot2` v3.3.4 or higher (this is ggplot2 bug 4511, soon to be fixed)

16
R/ab_property.R
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@ -30,7 +30,7 @@
#' @param x any (vector of) text that can be coerced to a valid antibiotic code with [as.ab()] #' @param x any (vector of) text that can be coerced to a valid antibiotic code with [as.ab()]
#' @param tolower a [logical] to indicate whether the first [character] of every output should be transformed to a lower case [character]. This will lead to e.g. "polymyxin B" and not "polymyxin b". #' @param tolower a [logical] to indicate whether the first [character] of every output should be transformed to a lower case [character]. This will lead to e.g. "polymyxin B" and not "polymyxin b".
#' @param property one of the column names of one of the [antibiotics] data set: `vector_or(colnames(antibiotics), sort = FALSE)`. #' @param property one of the column names of one of the [antibiotics] data set: `vector_or(colnames(antibiotics), sort = FALSE)`.
#' @param language language of the returned text, defaults to system language (see [get_locale()]) and can also be set with `getOption("AMR_locale")`. Use `language = NULL` or `language = ""` to prevent translation. #' @param language language of the returned text, defaults to system language (see [get_AMR_locale()]) and can also be set with `getOption("AMR_locale")`. Use `language = NULL` or `language = ""` to prevent translation.
#' @param administration way of administration, either `"oral"` or `"iv"` #' @param administration way of administration, either `"oral"` or `"iv"`
#' @param open browse the URL using [utils::browseURL()] #' @param open browse the URL using [utils::browseURL()]
#' @param ... in case of [set_ab_names()] and `data` is a [data.frame]: variables to select (supports tidy selection such as `column1:column4`), otherwise other arguments passed on to [as.ab()] #' @param ... in case of [set_ab_names()] and `data` is a [data.frame]: variables to select (supports tidy selection such as `column1:column4`), otherwise other arguments passed on to [as.ab()]
@ -120,7 +120,7 @@
#' colnames() #' colnames()
#' } #' }
#' } #' }
ab_name <- function(x, language = get_locale(), tolower = FALSE, ...) { ab_name <- function(x, language = get_AMR_locale(), tolower = FALSE, ...) {
meet_criteria(x, allow_NA = TRUE) meet_criteria(x, allow_NA = TRUE)
meet_criteria(language, has_length = 1, is_in = c(LANGUAGES_SUPPORTED, ""), allow_NULL = TRUE, allow_NA = TRUE) meet_criteria(language, has_length = 1, is_in = c(LANGUAGES_SUPPORTED, ""), allow_NULL = TRUE, allow_NA = TRUE)
meet_criteria(tolower, allow_class = "logical", has_length = 1) meet_criteria(tolower, allow_class = "logical", has_length = 1)
@ -163,7 +163,7 @@ ab_tradenames <- function(x, ...) {
#' @rdname ab_property #' @rdname ab_property
#' @export #' @export
ab_group <- function(x, language = get_locale(), ...) { ab_group <- function(x, language = get_AMR_locale(), ...) {
meet_criteria(x, allow_NA = TRUE) meet_criteria(x, allow_NA = TRUE)
meet_criteria(language, has_length = 1, is_in = c(LANGUAGES_SUPPORTED, ""), allow_NULL = TRUE, allow_NA = TRUE) meet_criteria(language, has_length = 1, is_in = c(LANGUAGES_SUPPORTED, ""), allow_NULL = TRUE, allow_NA = TRUE)
translate_AMR(ab_validate(x = x, property = "group", ...), language = language, only_affect_ab_names = TRUE) translate_AMR(ab_validate(x = x, property = "group", ...), language = language, only_affect_ab_names = TRUE)
@ -201,7 +201,7 @@ ab_atc <- function(x, only_first = FALSE, ...) {
#' @rdname ab_property #' @rdname ab_property
#' @export #' @export
ab_atc_group1 <- function(x, language = get_locale(), ...) { ab_atc_group1 <- function(x, language = get_AMR_locale(), ...) {
meet_criteria(x, allow_NA = TRUE) meet_criteria(x, allow_NA = TRUE)
meet_criteria(language, has_length = 1, is_in = c(LANGUAGES_SUPPORTED, ""), allow_NULL = TRUE, allow_NA = TRUE) meet_criteria(language, has_length = 1, is_in = c(LANGUAGES_SUPPORTED, ""), allow_NULL = TRUE, allow_NA = TRUE)
translate_AMR(ab_validate(x = x, property = "atc_group1", ...), language = language, only_affect_ab_names = TRUE) translate_AMR(ab_validate(x = x, property = "atc_group1", ...), language = language, only_affect_ab_names = TRUE)
@ -209,7 +209,7 @@ ab_atc_group1 <- function(x, language = get_locale(), ...) {
#' @rdname ab_property #' @rdname ab_property
#' @export #' @export
ab_atc_group2 <- function(x, language = get_locale(), ...) { ab_atc_group2 <- function(x, language = get_AMR_locale(), ...) {
meet_criteria(x, allow_NA = TRUE) meet_criteria(x, allow_NA = TRUE)
meet_criteria(language, has_length = 1, is_in = c(LANGUAGES_SUPPORTED, ""), allow_NULL = TRUE, allow_NA = TRUE) meet_criteria(language, has_length = 1, is_in = c(LANGUAGES_SUPPORTED, ""), allow_NULL = TRUE, allow_NA = TRUE)
translate_AMR(ab_validate(x = x, property = "atc_group2", ...), language = language, only_affect_ab_names = TRUE) translate_AMR(ab_validate(x = x, property = "atc_group2", ...), language = language, only_affect_ab_names = TRUE)
@ -276,7 +276,7 @@ ab_ddd_units <- function(x, administration = "oral", ...) {
#' @rdname ab_property #' @rdname ab_property
#' @export #' @export
ab_info <- function(x, language = get_locale(), ...) { ab_info <- function(x, language = get_AMR_locale(), ...) {
meet_criteria(x, allow_NA = TRUE) meet_criteria(x, allow_NA = TRUE)
meet_criteria(language, has_length = 1, is_in = c(LANGUAGES_SUPPORTED, ""), allow_NULL = TRUE, allow_NA = TRUE) meet_criteria(language, has_length = 1, is_in = c(LANGUAGES_SUPPORTED, ""), allow_NULL = TRUE, allow_NA = TRUE)
@ -327,7 +327,7 @@ ab_url <- function(x, open = FALSE, ...) {
#' @rdname ab_property #' @rdname ab_property
#' @export #' @export
ab_property <- function(x, property = "name", language = get_locale(), ...) { ab_property <- function(x, property = "name", language = get_AMR_locale(), ...) {
meet_criteria(x, allow_NA = TRUE) meet_criteria(x, allow_NA = TRUE)
meet_criteria(property, is_in = colnames(antibiotics), has_length = 1) meet_criteria(property, is_in = colnames(antibiotics), has_length = 1)
meet_criteria(language, is_in = c(LANGUAGES_SUPPORTED, ""), has_length = 1, allow_NULL = TRUE, allow_NA = TRUE) meet_criteria(language, is_in = c(LANGUAGES_SUPPORTED, ""), has_length = 1, allow_NULL = TRUE, allow_NA = TRUE)
@ -337,7 +337,7 @@ ab_property <- function(x, property = "name", language = get_locale(), ...) {
#' @rdname ab_property #' @rdname ab_property
#' @aliases ATC #' @aliases ATC
#' @export #' @export
set_ab_names <- function(data, ..., property = "name", language = get_locale(), snake_case = NULL) { set_ab_names <- function(data, ..., property = "name", language = get_AMR_locale(), snake_case = NULL) {
meet_criteria(data, allow_class = c("data.frame", "character")) meet_criteria(data, allow_class = c("data.frame", "character"))
meet_criteria(property, is_in = colnames(antibiotics), has_length = 1, ignore.case = TRUE) meet_criteria(property, is_in = colnames(antibiotics), has_length = 1, ignore.case = TRUE)
meet_criteria(language, has_length = 1, is_in = c(LANGUAGES_SUPPORTED, ""), allow_NULL = TRUE, allow_NA = TRUE) meet_criteria(language, has_length = 1, is_in = c(LANGUAGES_SUPPORTED, ""), allow_NULL = TRUE, allow_NA = TRUE)

2
R/bug_drug_combinations.R
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@ -162,7 +162,7 @@ bug_drug_combinations <- function(x,
#' @rdname bug_drug_combinations #' @rdname bug_drug_combinations
format.bug_drug_combinations <- function(x, format.bug_drug_combinations <- function(x,
translate_ab = "name (ab, atc)", translate_ab = "name (ab, atc)",
language = get_locale(), language = get_AMR_locale(),
minimum = 30, minimum = 30,
combine_SI = TRUE, combine_SI = TRUE,
combine_IR = FALSE, combine_IR = FALSE,

2
R/count.R
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@ -213,7 +213,7 @@ n_rsi <- count_all
#' @export #' @export
count_df <- function(data, count_df <- function(data,
translate_ab = "name", translate_ab = "name",
language = get_locale(), language = get_AMR_locale(),
combine_SI = TRUE, combine_SI = TRUE,
combine_IR = FALSE) { combine_IR = FALSE) {
tryCatch( tryCatch(

6
R/ggplot_rsi.R
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@ -158,7 +158,7 @@ ggplot_rsi <- function(data,
combine_SI = TRUE, combine_SI = TRUE,
combine_IR = FALSE, combine_IR = FALSE,
minimum = 30, minimum = 30,
language = get_locale(), language = get_AMR_locale(),
nrow = NULL, nrow = NULL,
colours = c(S = "#3CAEA3", colours = c(S = "#3CAEA3",
SI = "#3CAEA3", SI = "#3CAEA3",
@ -269,7 +269,7 @@ geom_rsi <- function(position = NULL,
fill = "interpretation", fill = "interpretation",
translate_ab = "name", translate_ab = "name",
minimum = 30, minimum = 30,
language = get_locale(), language = get_AMR_locale(),
combine_SI = TRUE, combine_SI = TRUE,
combine_IR = FALSE, combine_IR = FALSE,
...) { ...) {
@ -438,7 +438,7 @@ labels_rsi_count <- function(position = NULL,
x = "antibiotic", x = "antibiotic",
translate_ab = "name", translate_ab = "name",
minimum = 30, minimum = 30,
language = get_locale(), language = get_AMR_locale(),
combine_SI = TRUE, combine_SI = TRUE,
combine_IR = FALSE, combine_IR = FALSE,
datalabels.size = 3, datalabels.size = 3,

8
R/like.R
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@ -124,31 +124,23 @@ like <- function(x, pattern, ignore.case = TRUE) {
#' @rdname like #' @rdname like
#' @export #' @export
"%like%" <- function(x, pattern) { "%like%" <- function(x, pattern) {
meet_criteria(x, allow_NA = TRUE)
meet_criteria(pattern, allow_NA = FALSE)
like(x, pattern, ignore.case = TRUE) like(x, pattern, ignore.case = TRUE)
} }
#' @rdname like #' @rdname like
#' @export #' @export
"%unlike%" <- function(x, pattern) { "%unlike%" <- function(x, pattern) {
meet_criteria(x, allow_NA = TRUE)
meet_criteria(pattern, allow_NA = FALSE)
!like(x, pattern, ignore.case = TRUE) !like(x, pattern, ignore.case = TRUE)
} }
#' @rdname like #' @rdname like
#' @export #' @export
"%like_case%" <- function(x, pattern) { "%like_case%" <- function(x, pattern) {
meet_criteria(x, allow_NA = TRUE)
meet_criteria(pattern, allow_NA = FALSE)
like(x, pattern, ignore.case = FALSE) like(x, pattern, ignore.case = FALSE)
} }
#' @rdname like #' @rdname like
#' @export #' @export
"%unlike_case%" <- function(x, pattern) { "%unlike_case%" <- function(x, pattern) {
meet_criteria(x, allow_NA = TRUE)
meet_criteria(pattern, allow_NA = FALSE)
!like(x, pattern, ignore.case = FALSE) !like(x, pattern, ignore.case = FALSE)
} }

6
R/mo.R
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@ -37,7 +37,7 @@
#' @param allow_uncertain a number between `0` (or `"none"`) and `3` (or `"all"`), or `TRUE` (= `2`) or `FALSE` (= `0`) to indicate whether the input should be checked for less probable results, see *Details* #' @param allow_uncertain a number between `0` (or `"none"`) and `3` (or `"all"`), or `TRUE` (= `2`) or `FALSE` (= `0`) to indicate whether the input should be checked for less probable results, see *Details*
#' @param reference_df a [data.frame] to be used for extra reference when translating `x` to a valid [`mo`]. See [set_mo_source()] and [get_mo_source()] to automate the usage of your own codes (e.g. used in your analysis or organisation). #' @param reference_df a [data.frame] to be used for extra reference when translating `x` to a valid [`mo`]. See [set_mo_source()] and [get_mo_source()] to automate the usage of your own codes (e.g. used in your analysis or organisation).
#' @param ignore_pattern a regular expression (case-insensitive) of which all matches in `x` must return `NA`. This can be convenient to exclude known non-relevant input and can also be set with the option `AMR_ignore_pattern`, e.g. `options(AMR_ignore_pattern = "(not reported|contaminated flora)")`. #' @param ignore_pattern a regular expression (case-insensitive) of which all matches in `x` must return `NA`. This can be convenient to exclude known non-relevant input and can also be set with the option `AMR_ignore_pattern`, e.g. `options(AMR_ignore_pattern = "(not reported|contaminated flora)")`.
#' @param language language to translate text like "no growth", which defaults to the system language (see [get_locale()]) #' @param language language to translate text like "no growth", which defaults to the system language (see [get_AMR_locale()])
#' @param info a [logical] to indicate if a progress bar should be printed if more than 25 items are to be coerced, defaults to `TRUE` only in interactive mode #' @param info a [logical] to indicate if a progress bar should be printed if more than 25 items are to be coerced, defaults to `TRUE` only in interactive mode
#' @param ... other arguments passed on to functions #' @param ... other arguments passed on to functions
#' @rdname as.mo #' @rdname as.mo
@ -161,7 +161,7 @@ as.mo <- function(x,
allow_uncertain = TRUE, allow_uncertain = TRUE,
reference_df = get_mo_source(), reference_df = get_mo_source(),
ignore_pattern = getOption("AMR_ignore_pattern"), ignore_pattern = getOption("AMR_ignore_pattern"),
language = get_locale(), language = get_AMR_locale(),
info = interactive(), info = interactive(),
...) { ...) {
meet_criteria(x, allow_class = c("mo", "data.frame", "list", "character", "numeric", "integer", "factor"), allow_NA = TRUE) meet_criteria(x, allow_class = c("mo", "data.frame", "list", "character", "numeric", "integer", "factor"), allow_NA = TRUE)
@ -267,7 +267,7 @@ exec_as.mo <- function(x,
reference_data_to_use = MO_lookup, reference_data_to_use = MO_lookup,
actual_uncertainty = 1, actual_uncertainty = 1,
actual_input = NULL, actual_input = NULL,
language = get_locale()) { language = get_AMR_locale()) {
meet_criteria(x, allow_class = c("mo", "data.frame", "list", "character", "numeric", "integer", "factor"), allow_NA = TRUE) meet_criteria(x, allow_class = c("mo", "data.frame", "list", "character", "numeric", "integer", "factor"), allow_NA = TRUE)
meet_criteria(Becker, allow_class = c("logical", "character"), has_length = 1) meet_criteria(Becker, allow_class = c("logical", "character"), has_length = 1)
meet_criteria(Lancefield, allow_class = c("logical", "character"), has_length = 1) meet_criteria(Lancefield, allow_class = c("logical", "character"), has_length = 1)

56
R/mo_property.R
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@ -29,7 +29,7 @@
#' @inheritSection lifecycle Stable Lifecycle #' @inheritSection lifecycle Stable Lifecycle
#' @param x any [character] (vector) that can be coerced to a valid microorganism code with [as.mo()]. Can be left blank for auto-guessing the column containing microorganism codes if used in a data set, see *Examples*. #' @param x any [character] (vector) that can be coerced to a valid microorganism code with [as.mo()]. Can be left blank for auto-guessing the column containing microorganism codes if used in a data set, see *Examples*.
#' @param property one of the column names of the [microorganisms] data set: `r vector_or(colnames(microorganisms), sort = FALSE, quotes = TRUE)`, or must be `"shortname"` #' @param property one of the column names of the [microorganisms] data set: `r vector_or(colnames(microorganisms), sort = FALSE, quotes = TRUE)`, or must be `"shortname"`
#' @param language language of the returned text, defaults to system language (see [get_locale()]) and can be overwritten by setting the option `AMR_locale`, e.g. `options(AMR_locale = "de")`, see [translate]. Also used to translate text like "no growth". Use `language = NULL` or `language = ""` to prevent translation. #' @param language language of the returned text, defaults to system language (see [get_AMR_locale()]) and can be overwritten by setting the option `AMR_locale`, e.g. `options(AMR_locale = "de")`, see [translate]. Also used to translate text like "no growth". Use `language = NULL` or `language = ""` to prevent translation.
#' @param ... other arguments passed on to [as.mo()], such as 'allow_uncertain' and 'ignore_pattern' #' @param ... other arguments passed on to [as.mo()], such as 'allow_uncertain' and 'ignore_pattern'
#' @param ab any (vector of) text that can be coerced to a valid antibiotic code with [as.ab()] #' @param ab any (vector of) text that can be coerced to a valid antibiotic code with [as.ab()]
#' @param open browse the URL using [`browseURL()`][utils::browseURL()] #' @param open browse the URL using [`browseURL()`][utils::browseURL()]
@ -170,7 +170,7 @@
#' mo_info("E. coli") #' mo_info("E. coli")
#' } #' }
#' } #' }
mo_name <- function(x, language = get_locale(), ...) { mo_name <- function(x, language = get_AMR_locale(), ...) {
if (missing(x)) { if (missing(x)) {
# this tries to find the data and an <mo> column # this tries to find the data and an <mo> column
x <- find_mo_col(fn = "mo_name") x <- find_mo_col(fn = "mo_name")
@ -190,7 +190,7 @@ mo_fullname <- mo_name
#' @rdname mo_property #' @rdname mo_property
#' @export #' @export
mo_shortname <- function(x, language = get_locale(), ...) { mo_shortname <- function(x, language = get_AMR_locale(), ...) {
if (missing(x)) { if (missing(x)) {
# this tries to find the data and an <mo> column # this tries to find the data and an <mo> column
x <- find_mo_col(fn = "mo_shortname") x <- find_mo_col(fn = "mo_shortname")
@ -230,7 +230,7 @@ mo_shortname <- function(x, language = get_locale(), ...) {
#' @rdname mo_property #' @rdname mo_property
#' @export #' @export
mo_subspecies <- function(x, language = get_locale(), ...) { mo_subspecies <- function(x, language = get_AMR_locale(), ...) {
if (missing(x)) { if (missing(x)) {
# this tries to find the data and an <mo> column # this tries to find the data and an <mo> column
x <- find_mo_col(fn = "mo_subspecies") x <- find_mo_col(fn = "mo_subspecies")
@ -243,7 +243,7 @@ mo_subspecies <- function(x, language = get_locale(), ...) {
#' @rdname mo_property #' @rdname mo_property
#' @export #' @export
mo_species <- function(x, language = get_locale(), ...) { mo_species <- function(x, language = get_AMR_locale(), ...) {
if (missing(x)) { if (missing(x)) {
# this tries to find the data and an <mo> column # this tries to find the data and an <mo> column
x <- find_mo_col(fn = "mo_species") x <- find_mo_col(fn = "mo_species")
@ -256,7 +256,7 @@ mo_species <- function(x, language = get_locale(), ...) {
#' @rdname mo_property #' @rdname mo_property
#' @export #' @export
mo_genus <- function(x, language = get_locale(), ...) { mo_genus <- function(x, language = get_AMR_locale(), ...) {
if (missing(x)) { if (missing(x)) {
# this tries to find the data and an <mo> column # this tries to find the data and an <mo> column
x <- find_mo_col(fn = "mo_genus") x <- find_mo_col(fn = "mo_genus")
@ -269,7 +269,7 @@ mo_genus <- function(x, language = get_locale(), ...) {
#' @rdname mo_property #' @rdname mo_property
#' @export #' @export
mo_family <- function(x, language = get_locale(), ...) { mo_family <- function(x, language = get_AMR_locale(), ...) {
if (missing(x)) { if (missing(x)) {
# this tries to find the data and an <mo> column # this tries to find the data and an <mo> column
x <- find_mo_col(fn = "mo_family") x <- find_mo_col(fn = "mo_family")
@ -282,7 +282,7 @@ mo_family <- function(x, language = get_locale(), ...) {
#' @rdname mo_property #' @rdname mo_property
#' @export #' @export
mo_order <- function(x, language = get_locale(), ...) { mo_order <- function(x, language = get_AMR_locale(), ...) {
if (missing(x)) { if (missing(x)) {
# this tries to find the data and an <mo> column # this tries to find the data and an <mo> column
x <- find_mo_col(fn = "mo_order") x <- find_mo_col(fn = "mo_order")
@ -295,7 +295,7 @@ mo_order <- function(x, language = get_locale(), ...) {
#' @rdname mo_property #' @rdname mo_property
#' @export #' @export
mo_class <- function(x, language = get_locale(), ...) { mo_class <- function(x, language = get_AMR_locale(), ...) {
if (missing(x)) { if (missing(x)) {
# this tries to find the data and an <mo> column # this tries to find the data and an <mo> column
x <- find_mo_col(fn = "mo_class") x <- find_mo_col(fn = "mo_class")
@ -308,7 +308,7 @@ mo_class <- function(x, language = get_locale(), ...) {
#' @rdname mo_property #' @rdname mo_property
#' @export #' @export
mo_phylum <- function(x, language = get_locale(), ...) { mo_phylum <- function(x, language = get_AMR_locale(), ...) {
if (missing(x)) { if (missing(x)) {
# this tries to find the data and an <mo> column # this tries to find the data and an <mo> column
x <- find_mo_col(fn = "mo_phylum") x <- find_mo_col(fn = "mo_phylum")
@ -321,7 +321,7 @@ mo_phylum <- function(x, language = get_locale(), ...) {
#' @rdname mo_property #' @rdname mo_property
#' @export #' @export
mo_kingdom <- function(x, language = get_locale(), ...) { mo_kingdom <- function(x, language = get_AMR_locale(), ...) {
if (missing(x)) { if (missing(x)) {
# this tries to find the data and an <mo> column # this tries to find the data and an <mo> column
x <- find_mo_col(fn = "mo_kingdom") x <- find_mo_col(fn = "mo_kingdom")
@ -338,7 +338,7 @@ mo_domain <- mo_kingdom
#' @rdname mo_property #' @rdname mo_property
#' @export #' @export
mo_type <- function(x, language = get_locale(), ...) { mo_type <- function(x, language = get_AMR_locale(), ...) {
if (missing(x)) { if (missing(x)) {
# this tries to find the data and an <mo> column # this tries to find the data and an <mo> column
x <- find_mo_col(fn = "mo_type") x <- find_mo_col(fn = "mo_type")
@ -354,7 +354,7 @@ mo_type <- function(x, language = get_locale(), ...) {
#' @rdname mo_property #' @rdname mo_property
#' @export #' @export
mo_gramstain <- function(x, language = get_locale(), ...) { mo_gramstain <- function(x, language = get_AMR_locale(), ...) {
if (missing(x)) { if (missing(x)) {
# this tries to find the data and an <mo> column # this tries to find the data and an <mo> column
x <- find_mo_col(fn = "mo_gramstain") x <- find_mo_col(fn = "mo_gramstain")
@ -385,7 +385,7 @@ mo_gramstain <- function(x, language = get_locale(), ...) {
#' @rdname mo_property #' @rdname mo_property
#' @export #' @export
mo_is_gram_negative <- function(x, language = get_locale(), ...) { mo_is_gram_negative <- function(x, language = get_AMR_locale(), ...) {
if (missing(x)) { if (missing(x)) {
# this tries to find the data and an <mo> column # this tries to find the data and an <mo> column
x <- find_mo_col(fn = "mo_is_gram_negative") x <- find_mo_col(fn = "mo_is_gram_negative")
@ -404,7 +404,7 @@ mo_is_gram_negative <- function(x, language = get_locale(), ...) {
#' @rdname mo_property #' @rdname mo_property
#' @export #' @export
mo_is_gram_positive <- function(x, language = get_locale(), ...) { mo_is_gram_positive <- function(x, language = get_AMR_locale(), ...) {
if (missing(x)) { if (missing(x)) {
# this tries to find the data and an <mo> column # this tries to find the data and an <mo> column
x <- find_mo_col(fn = "mo_is_gram_positive") x <- find_mo_col(fn = "mo_is_gram_positive")
@ -423,7 +423,7 @@ mo_is_gram_positive <- function(x, language = get_locale(), ...) {
#' @rdname mo_property #' @rdname mo_property
#' @export #' @export
mo_is_yeast <- function(x, language = get_locale(), ...) { mo_is_yeast <- function(x, language = get_AMR_locale(), ...) {
if (missing(x)) { if (missing(x)) {
# this tries to find the data and an <mo> column # this tries to find the data and an <mo> column
x <- find_mo_col(fn = "mo_is_yeast") x <- find_mo_col(fn = "mo_is_yeast")
@ -449,7 +449,7 @@ mo_is_yeast <- function(x, language = get_locale(), ...) {
#' @rdname mo_property #' @rdname mo_property
#' @export #' @export
mo_is_intrinsic_resistant <- function(x, ab, language = get_locale(), ...) { mo_is_intrinsic_resistant <- function(x, ab, language = get_AMR_locale(), ...) {
if (missing(x)) { if (missing(x)) {
# this tries to find the data and an <mo> column # this tries to find the data and an <mo> column
x <- find_mo_col(fn = "mo_is_intrinsic_resistant") x <- find_mo_col(fn = "mo_is_intrinsic_resistant")
@ -483,7 +483,7 @@ mo_is_intrinsic_resistant <- function(x, ab, language = get_locale(), ...) {
#' @rdname mo_property #' @rdname mo_property
#' @export #' @export
mo_snomed <- function(x, language = get_locale(), ...) { mo_snomed <- function(x, language = get_AMR_locale(), ...) {
if (missing(x)) { if (missing(x)) {
# this tries to find the data and an <mo> column # this tries to find the data and an <mo> column
x <- find_mo_col(fn = "mo_snomed") x <- find_mo_col(fn = "mo_snomed")
@ -496,7 +496,7 @@ mo_snomed <- function(x, language = get_locale(), ...) {
#' @rdname mo_property #' @rdname mo_property
#' @export #' @export
mo_ref <- function(x, language = get_locale(), ...) { mo_ref <- function(x, language = get_AMR_locale(), ...) {
if (missing(x)) { if (missing(x)) {
# this tries to find the data and an <mo> column # this tries to find the data and an <mo> column
x <- find_mo_col(fn = "mo_ref") x <- find_mo_col(fn = "mo_ref")
@ -509,7 +509,7 @@ mo_ref <- function(x, language = get_locale(), ...) {
#' @rdname mo_property #' @rdname mo_property
#' @export #' @export
mo_authors <- function(x, language = get_locale(), ...) { mo_authors <- function(x, language = get_AMR_locale(), ...) {
if (missing(x)) { if (missing(x)) {
# this tries to find the data and an <mo> column # this tries to find the data and an <mo> column
x <- find_mo_col(fn = "mo_authors") x <- find_mo_col(fn = "mo_authors")
@ -525,7 +525,7 @@ mo_authors <- function(x, language = get_locale(), ...) {
#' @rdname mo_property #' @rdname mo_property
#' @export #' @export
mo_year <- function(x, language = get_locale(), ...) { mo_year <- function(x, language = get_AMR_locale(), ...) {
if (missing(x)) { if (missing(x)) {
# this tries to find the data and an <mo> column # this tries to find the data and an <mo> column
x <- find_mo_col(fn = "mo_year") x <- find_mo_col(fn = "mo_year")
@ -541,7 +541,7 @@ mo_year <- function(x, language = get_locale(), ...) {
#' @rdname mo_property #' @rdname mo_property
#' @export #' @export
mo_lpsn <- function(x, language = get_locale(), ...) { mo_lpsn <- function(x, language = get_AMR_locale(), ...) {
if (missing(x)) { if (missing(x)) {
# this tries to find the data and an <mo> column # this tries to find the data and an <mo> column
x <- find_mo_col(fn = "mo_rank") x <- find_mo_col(fn = "mo_rank")
@ -554,7 +554,7 @@ mo_lpsn <- function(x, language = get_locale(), ...) {
#' @rdname mo_property #' @rdname mo_property
#' @export #' @export
mo_rank <- function(x, language = get_locale(), ...) { mo_rank <- function(x, language = get_AMR_locale(), ...) {
if (missing(x)) { if (missing(x)) {
# this tries to find the data and an <mo> column # this tries to find the data and an <mo> column
x <- find_mo_col(fn = "mo_rank") x <- find_mo_col(fn = "mo_rank")
@ -567,7 +567,7 @@ mo_rank <- function(x, language = get_locale(), ...) {
#' @rdname mo_property #' @rdname mo_property
#' @export #' @export
mo_taxonomy <- function(x, language = get_locale(), ...) { mo_taxonomy <- function(x, language = get_AMR_locale(), ...) {
if (missing(x)) { if (missing(x)) {
# this tries to find the data and an <mo> column # this tries to find the data and an <mo> column
x <- find_mo_col(fn = "mo_taxonomy") x <- find_mo_col(fn = "mo_taxonomy")
@ -593,7 +593,7 @@ mo_taxonomy <- function(x, language = get_locale(), ...) {
#' @rdname mo_property #' @rdname mo_property
#' @export #' @export
mo_synonyms <- function(x, language = get_locale(), ...) { mo_synonyms <- function(x, language = get_AMR_locale(), ...) {
if (missing(x)) { if (missing(x)) {
# this tries to find the data and an <mo> column # this tries to find the data and an <mo> column
x <- find_mo_col(fn = "mo_synonyms") x <- find_mo_col(fn = "mo_synonyms")
@ -626,7 +626,7 @@ mo_synonyms <- function(x, language = get_locale(), ...) {
#' @rdname mo_property #' @rdname mo_property
#' @export #' @export
mo_info <- function(x, language = get_locale(), ...) { mo_info <- function(x, language = get_AMR_locale(), ...) {
if (missing(x)) { if (missing(x)) {
# this tries to find the data and an <mo> column # this tries to find the data and an <mo> column
x <- find_mo_col(fn = "mo_info") x <- find_mo_col(fn = "mo_info")
@ -657,7 +657,7 @@ mo_info <- function(x, language = get_locale(), ...) {
#' @rdname mo_property #' @rdname mo_property
#' @export #' @export
mo_url <- function(x, open = FALSE, language = get_locale(), ...) { mo_url <- function(x, open = FALSE, language = get_AMR_locale(), ...) {
if (missing(x)) { if (missing(x)) {
# this tries to find the data and an <mo> column # this tries to find the data and an <mo> column
x <- find_mo_col(fn = "mo_url") x <- find_mo_col(fn = "mo_url")
@ -696,7 +696,7 @@ mo_url <- function(x, open = FALSE, language = get_locale(), ...) {
#' @rdname mo_property #' @rdname mo_property
#' @export #' @export
mo_property <- function(x, property = "fullname", language = get_locale(), ...) { mo_property <- function(x, property = "fullname", language = get_AMR_locale(), ...) {
if (missing(x)) { if (missing(x)) {
# this tries to find the data and an <mo> column # this tries to find the data and an <mo> column
x <- find_mo_col(fn = "mo_property") x <- find_mo_col(fn = "mo_property")

18
R/plot.R
View File

@ -35,7 +35,7 @@
#' @param main,title title of the plot #' @param main,title title of the plot
#' @param xlab,ylab axis title #' @param xlab,ylab axis title
#' @param colours_RSI colours to use for filling in the bars, must be a vector of three values (in the order R, S and I). The default colours are colour-blind friendly. #' @param colours_RSI colours to use for filling in the bars, must be a vector of three values (in the order R, S and I). The default colours are colour-blind friendly.
#' @param language language to be used to translate 'Susceptible', 'Increased exposure'/'Intermediate' and 'Resistant', defaults to system language (see [get_locale()]) and can be overwritten by setting the option `AMR_locale`, e.g. `options(AMR_locale = "de")`, see [translate]. Use `language = NULL` or `language = ""` to prevent translation. #' @param language language to be used to translate 'Susceptible', 'Increased exposure'/'Intermediate' and 'Resistant', defaults to system language (see [get_AMR_locale()]) and can be overwritten by setting the option `AMR_locale`, e.g. `options(AMR_locale = "de")`, see [translate]. Use `language = NULL` or `language = ""` to prevent translation.
#' @param expand a [logical] to indicate whether the range on the x axis should be expanded between the lowest and highest value. For MIC values, intermediate values will be factors of 2 starting from the highest MIC value. For disk diameters, the whole diameter range will be filled. #' @param expand a [logical] to indicate whether the range on the x axis should be expanded between the lowest and highest value. For MIC values, intermediate values will be factors of 2 starting from the highest MIC value. For disk diameters, the whole diameter range will be filled.
#' @details #' @details
#' The interpretation of "I" will be named "Increased exposure" for all EUCAST guidelines since 2019, and will be named "Intermediate" in all other cases. #' The interpretation of "I" will be named "Increased exposure" for all EUCAST guidelines since 2019, and will be named "Intermediate" in all other cases.
@ -83,7 +83,7 @@ plot.mic <- function(x,
ylab = "Frequency", ylab = "Frequency",
xlab = "Minimum Inhibitory Concentration (mg/L)", xlab = "Minimum Inhibitory Concentration (mg/L)",
colours_RSI = c("#ED553B", "#3CAEA3", "#F6D55C"), colours_RSI = c("#ED553B", "#3CAEA3", "#F6D55C"),
language = get_locale(), language = get_AMR_locale(),
expand = TRUE, expand = TRUE,
...) { ...) {
meet_criteria(mo, allow_class = c("mo", "character"), allow_NULL = TRUE) meet_criteria(mo, allow_class = c("mo", "character"), allow_NULL = TRUE)
@ -169,7 +169,7 @@ barplot.mic <- function(height,
ylab = "Frequency", ylab = "Frequency",
xlab = "Minimum Inhibitory Concentration (mg/L)", xlab = "Minimum Inhibitory Concentration (mg/L)",
colours_RSI = c("#ED553B", "#3CAEA3", "#F6D55C"), colours_RSI = c("#ED553B", "#3CAEA3", "#F6D55C"),
language = get_locale(), language = get_AMR_locale(),
expand = TRUE, expand = TRUE,
...) { ...) {
meet_criteria(main, allow_class = "character", has_length = 1, allow_NULL = TRUE) meet_criteria(main, allow_class = "character", has_length = 1, allow_NULL = TRUE)
@ -214,7 +214,7 @@ autoplot.mic <- function(object,
ylab = "Frequency", ylab = "Frequency",
xlab = "Minimum Inhibitory Concentration (mg/L)", xlab = "Minimum Inhibitory Concentration (mg/L)",
colours_RSI = c("#ED553B", "#3CAEA3", "#F6D55C"), colours_RSI = c("#ED553B", "#3CAEA3", "#F6D55C"),
language = get_locale(), language = get_AMR_locale(),
expand = TRUE, expand = TRUE,
...) { ...) {
stop_ifnot_installed("ggplot2") stop_ifnot_installed("ggplot2")
@ -305,7 +305,7 @@ plot.disk <- function(x,
ab = NULL, ab = NULL,
guideline = "EUCAST", guideline = "EUCAST",
colours_RSI = c("#ED553B", "#3CAEA3", "#F6D55C"), colours_RSI = c("#ED553B", "#3CAEA3", "#F6D55C"),
language = get_locale(), language = get_AMR_locale(),
expand = TRUE, expand = TRUE,
...) { ...) {
meet_criteria(main, allow_class = "character", has_length = 1, allow_NULL = TRUE) meet_criteria(main, allow_class = "character", has_length = 1, allow_NULL = TRUE)
@ -392,7 +392,7 @@ barplot.disk <- function(height,
ab = NULL, ab = NULL,
guideline = "EUCAST", guideline = "EUCAST",
colours_RSI = c("#ED553B", "#3CAEA3", "#F6D55C"), colours_RSI = c("#ED553B", "#3CAEA3", "#F6D55C"),
language = get_locale(), language = get_AMR_locale(),
expand = TRUE, expand = TRUE,
...) { ...) {
meet_criteria(main, allow_class = "character", has_length = 1, allow_NULL = TRUE) meet_criteria(main, allow_class = "character", has_length = 1, allow_NULL = TRUE)
@ -437,7 +437,7 @@ autoplot.disk <- function(object,
xlab = "Disk diffusion diameter (mm)", xlab = "Disk diffusion diameter (mm)",
guideline = "EUCAST", guideline = "EUCAST",
colours_RSI = c("#ED553B", "#3CAEA3", "#F6D55C"), colours_RSI = c("#ED553B", "#3CAEA3", "#F6D55C"),
language = get_locale(), language = get_AMR_locale(),
expand = TRUE, expand = TRUE,
...) { ...) {
stop_ifnot_installed("ggplot2") stop_ifnot_installed("ggplot2")
@ -579,7 +579,7 @@ barplot.rsi <- function(height,
xlab = "Antimicrobial Interpretation", xlab = "Antimicrobial Interpretation",
ylab = "Frequency", ylab = "Frequency",
colours_RSI = c("#ED553B", "#3CAEA3", "#F6D55C"), colours_RSI = c("#ED553B", "#3CAEA3", "#F6D55C"),
language = get_locale(), language = get_AMR_locale(),
expand = TRUE, expand = TRUE,
...) { ...) {
meet_criteria(xlab, allow_class = "character", has_length = 1) meet_criteria(xlab, allow_class = "character", has_length = 1)
@ -623,7 +623,7 @@ autoplot.rsi <- function(object,
xlab = "Antimicrobial Interpretation", xlab = "Antimicrobial Interpretation",
ylab = "Frequency", ylab = "Frequency",
colours_RSI = c("#ED553B", "#3CAEA3", "#F6D55C"), colours_RSI = c("#ED553B", "#3CAEA3", "#F6D55C"),
language = get_locale(), language = get_AMR_locale(),
...) { ...) {
stop_ifnot_installed("ggplot2") stop_ifnot_installed("ggplot2")
meet_criteria(title, allow_class = "character", allow_NULL = TRUE) meet_criteria(title, allow_class = "character", allow_NULL = TRUE)

2
R/proportion.R
View File

@ -277,7 +277,7 @@ proportion_S <- function(...,
#' @export #' @export
proportion_df <- function(data, proportion_df <- function(data,
translate_ab = "name", translate_ab = "name",
language = get_locale(), language = get_AMR_locale(),
minimum = 30, minimum = 30,
as_percent = FALSE, as_percent = FALSE,
combine_SI = TRUE, combine_SI = TRUE,

2
R/rsi_calc.R
View File

@ -202,7 +202,7 @@ rsi_calc <- function(...,
rsi_calc_df <- function(type, # "proportion", "count" or "both" rsi_calc_df <- function(type, # "proportion", "count" or "both"
data, data,
translate_ab = "name", translate_ab = "name",
language = get_locale(), language = get_AMR_locale(),
minimum = 30, minimum = 30,
as_percent = FALSE, as_percent = FALSE,
combine_SI = TRUE, combine_SI = TRUE,

2
R/rsi_df.R
View File

@ -27,7 +27,7 @@
#' @export #' @export
rsi_df <- function(data, rsi_df <- function(data,
translate_ab = "name", translate_ab = "name",
language = get_locale(), language = get_AMR_locale(),
minimum = 30, minimum = 30,
as_percent = FALSE, as_percent = FALSE,
combine_SI = TRUE, combine_SI = TRUE,

BIN
R/sysdata.rda
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35
R/translate.R
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@ -29,7 +29,7 @@
#' @inheritSection lifecycle Stable Lifecycle #' @inheritSection lifecycle Stable Lifecycle
#' @details Strings will be translated to foreign languages if they are defined in a local translation file. Additions to this file can be suggested at our repository. The file can be found here: <https://github.com/msberends/AMR/blob/main/data-raw/translations.tsv>. This file will be read by all functions where a translated output can be desired, like all [`mo_*`][mo_property()] functions (such as [mo_name()], [mo_gramstain()], [mo_type()], etc.) and [`ab_*`][ab_property()] functions (such as [ab_name()], [ab_group()], etc.). #' @details Strings will be translated to foreign languages if they are defined in a local translation file. Additions to this file can be suggested at our repository. The file can be found here: <https://github.com/msberends/AMR/blob/main/data-raw/translations.tsv>. This file will be read by all functions where a translated output can be desired, like all [`mo_*`][mo_property()] functions (such as [mo_name()], [mo_gramstain()], [mo_type()], etc.) and [`ab_*`][ab_property()] functions (such as [ab_name()], [ab_group()], etc.).
#' #'
#' Currently supported languages are: `r vector_and(gsub(";.*", "", ISOcodes::ISO_639_2[which(ISOcodes::ISO_639_2$Alpha_2 %in% LANGUAGES_SUPPORTED), "Name"]), quotes = FALSE)`. All these languages have translations available for all antimicrobial agents and colloquial microorganism names. #' Currently supported languages are: `r vector_and(names(LANGUAGES_SUPPORTED), quotes = FALSE)`. All these languages have translations available for all antimicrobial agents and colloquial microorganism names.
#' #'
#' Please suggest your own translations [by creating a new issue on our repository](https://github.com/msberends/AMR/issues/new?title=Translations). #' Please suggest your own translations [by creating a new issue on our repository](https://github.com/msberends/AMR/issues/new?title=Translations).
#' #'
@ -39,7 +39,7 @@
#' 1. Setting the R option `AMR_locale`, e.g. by running `options(AMR_locale = "de")` #' 1. Setting the R option `AMR_locale`, e.g. by running `options(AMR_locale = "de")`
#' 2. Setting the system variable `LANGUAGE` or `LANG`, e.g. by adding `LANGUAGE="de_DE.utf8"` to your `.Renviron` file in your home directory #' 2. Setting the system variable `LANGUAGE` or `LANG`, e.g. by adding `LANGUAGE="de_DE.utf8"` to your `.Renviron` file in your home directory
#' #'
#' So if the R option `AMR_locale` is set, the system variables `LANGUAGE` and `LANG` will be ignored. #' Thus, if the R option `AMR_locale` is set, the system variables `LANGUAGE` and `LANG` will be ignored.
#' @inheritSection AMR Read more on Our Website! #' @inheritSection AMR Read more on Our Website!
#' @rdname translate #' @rdname translate
#' @name translate #' @name translate
@ -47,15 +47,15 @@
#' @examples #' @examples
#' # The 'language' argument of below functions #' # The 'language' argument of below functions
#' # will be set automatically to your system language #' # will be set automatically to your system language
#' # with get_locale() #' # with get_AMR_locale()
#' #'
#' # English #' # English
#' mo_name("CoNS", language = "en") #' mo_name("CoNS", language = "en")
#' #> "Coagulase-negative Staphylococcus (CoNS)" #' #> "Coagulase-negative Staphylococcus (CoNS)"
#' #'
#' # Danish #' # Danish
#' mo_name("CoNS", language = "nl") #' mo_name("CoNS", language = "da")
#' #> "Koagulase-negative stafylokokker (CoNS)" #' #> "Koagulase-negative stafylokokker (KNS)"
#' #'
#' # Dutch #' # Dutch
#' mo_name("CoNS", language = "nl") #' mo_name("CoNS", language = "nl")
@ -76,7 +76,7 @@
#' # Spanish #' # Spanish
#' mo_name("CoNS", language = "es") #' mo_name("CoNS", language = "es")
#' #> "Staphylococcus coagulasa negativo (SCN)" #' #> "Staphylococcus coagulasa negativo (SCN)"
get_locale <- function() { get_AMR_locale <- function() {
# AMR versions 1.3.0 and prior used the environmental variable: # AMR versions 1.3.0 and prior used the environmental variable:
if (!identical("", Sys.getenv("AMR_locale"))) { if (!identical("", Sys.getenv("AMR_locale"))) {
options(AMR_locale = Sys.getenv("AMR_locale")) options(AMR_locale = Sys.getenv("AMR_locale"))
@ -88,10 +88,10 @@ get_locale <- function() {
return(lang) return(lang)
} else { } else {
stop_("unsupported language set as option 'AMR_locale': \"", lang, "\" - use either ", stop_("unsupported language set as option 'AMR_locale': \"", lang, "\" - use either ",
vector_or(LANGUAGES_SUPPORTED, quotes = TRUE)) vector_or(paste0('"', LANGUAGES_SUPPORTED, '" (', names(LANGUAGES_SUPPORTED), ")"), quotes = FALSE))
} }
} else { } else {
# we now support the LANGUAGE system variable - return it if set # now check the LANGUAGE system variable - return it if set
if (!identical("", Sys.getenv("LANGUAGE"))) { if (!identical("", Sys.getenv("LANGUAGE"))) {
return(coerce_language_setting(Sys.getenv("LANGUAGE"))) return(coerce_language_setting(Sys.getenv("LANGUAGE")))
} }
@ -100,11 +100,22 @@ get_locale <- function() {
} }
} }
# fallback - automatic determination based on LC_COLLATE
if (interactive() && message_not_thrown_before("get_AMR_locale", entire_session = TRUE)) {
lang <- coerce_language_setting(Sys.getlocale("LC_COLLATE"))
if (lang != "en") {
message_("Assuming the ", names(LANGUAGES_SUPPORTED)[LANGUAGES_SUPPORTED == lang],
" language for the AMR package. Change this with `options(AMR_locale = \"...\")` or see `?get_AMR_locale()`. ",
"Supported languages are ", vector_and(names(LANGUAGES_SUPPORTED), quotes = FALSE),
". This note will be shown once per session.")
}
return(lang)
}
coerce_language_setting(Sys.getlocale("LC_COLLATE")) coerce_language_setting(Sys.getlocale("LC_COLLATE"))
} }
coerce_language_setting <- function(lang) { coerce_language_setting <- function(lang) {
# grepl() with ignore.case = FALSE is faster than %like% # grepl() with ignore.case = FALSE is 8x faster than %like_case%
if (grepl("^(English|en_|EN_)", lang, ignore.case = FALSE, perl = TRUE)) { if (grepl("^(English|en_|EN_)", lang, ignore.case = FALSE, perl = TRUE)) {
# as first option to optimise speed # as first option to optimise speed
"en" "en"
@ -122,6 +133,10 @@ coerce_language_setting <- function(lang) {
"fr" "fr"
} else if (grepl("^(Portuguese|Portugu.+s|pt_|PT_)", lang, ignore.case = FALSE, perl = TRUE)) { } else if (grepl("^(Portuguese|Portugu.+s|pt_|PT_)", lang, ignore.case = FALSE, perl = TRUE)) {
"pt" "pt"
} else if (grepl("^(Russian|русс|ru_|RU_)", lang, ignore.case = FALSE, perl = TRUE)) {
"ru"
} else if (grepl("^(Swedish|Svenskt|sv_|SV_)", lang, ignore.case = FALSE, perl = TRUE)) {
"sv"
} else { } else {
# other language -> set to English # other language -> set to English
"en" "en"
@ -130,7 +145,7 @@ coerce_language_setting <- function(lang) {
# translate strings based on inst/translations.tsv # translate strings based on inst/translations.tsv
translate_AMR <- function(from, translate_AMR <- function(from,
language = get_locale(), language = get_AMR_locale(),
only_unknown = FALSE, only_unknown = FALSE,
only_affect_ab_names = FALSE, only_affect_ab_names = FALSE,
only_affect_mo_names = FALSE) { only_affect_mo_names = FALSE) {

2
_pkgdown.yml
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@ -175,7 +175,7 @@ reference:
- "`age_groups`" - "`age_groups`"
- "`age`" - "`age`"
- "`availability`" - "`availability`"
- "`get_locale`" - "`get_AMR_locale`"
- "`ggplot_pca`" - "`ggplot_pca`"
- "`italicise_taxonomy`" - "`italicise_taxonomy`"
- "`join`" - "`join`"

BIN
data-raw/AMR_latest.tar.gz
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11
data-raw/_internals.R
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@ -68,7 +68,16 @@ TRANSLATIONS <- utils::read.delim(file = "data-raw/translations.tsv",
quote = "") quote = "")
# for checking input in `language` argument in e.g. mo_*() and ab_*() functions # for checking input in `language` argument in e.g. mo_*() and ab_*() functions
LANGUAGES_SUPPORTED <- sort(c("en", colnames(TRANSLATIONS)[nchar(colnames(TRANSLATIONS)) == 2])) LANGUAGES_SUPPORTED <- c(Danish = "da",
English = "en",
German = "de",
Spanish = "es",
French = "fr",
Italian = "it",
Dutch = "nl",
Portuguese = "pt",
Russian = "ru",
Swedish = "sv")
# EXAMPLE_ISOLATES <- readRDS("data-raw/example_isolates.rds") # EXAMPLE_ISOLATES <- readRDS("data-raw/example_isolates.rds")

526
data-raw/translations.tsv
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@ -1,269 +1,269 @@
pattern regular_expr case_sensitive affect_ab_name affect_mo_name de nl es it fr pt da pattern regular_expr case_sensitive affect_ab_name affect_mo_name de nl es it fr pt da sv ru
Coagulase-negative Staphylococcus TRUE TRUE FALSE TRUE Koagulase-negative Staphylococcus Coagulase-negatieve Staphylococcus Staphylococcus coagulasa negativo Staphylococcus negativo coagulasi Staphylococcus à coagulase négative Staphylococcus coagulase negativo Koagulase-negative stafylokokker Coagulase-negative Staphylococcus TRUE TRUE FALSE TRUE Koagulase-negative Staphylococcus Coagulase-negatieve Staphylococcus Staphylococcus coagulasa negativo Staphylococcus negativo coagulasi Staphylococcus à coagulase négative Staphylococcus coagulase negativo Koagulase-negative stafylokokker Koagulasnegativa stafylokocker Коагулазоотрицательный стафилококк
Coagulase-positive Staphylococcus TRUE TRUE FALSE TRUE Koagulase-positive Staphylococcus Coagulase-positieve Staphylococcus Staphylococcus coagulasa positivo Staphylococcus positivo coagulasi Staphylococcus à coagulase positif Staphylococcus coagulase positivo Koagulase-positive stafylokokker Coagulase-positive Staphylococcus TRUE TRUE FALSE TRUE Koagulase-positive Staphylococcus Coagulase-positieve Staphylococcus Staphylococcus coagulasa positivo Staphylococcus positivo coagulasi Staphylococcus à coagulase positif Staphylococcus coagulase positivo Koagulase-positive stafylokokker Koagulaspositiva stafylokocker Коагулазоположительный стафилококк
Beta-haemolytic Streptococcus TRUE TRUE FALSE TRUE Beta-hämolytischer Streptococcus Beta-hemolytische Streptococcus Streptococcus Beta-hemolítico Streptococcus Beta-emolitico Streptococcus Bêta-hémolytique Streptococcus Beta-hemolítico Beta-haemolytiske streptokokker Beta-haemolytic Streptococcus TRUE TRUE FALSE TRUE Beta-hämolytischer Streptococcus Beta-hemolytische Streptococcus Streptococcus Beta-hemolítico Streptococcus Beta-emolitico Streptococcus Bêta-hémolytique Streptococcus Beta-hemolítico Beta-haemolytiske streptokokker Beta-hemolytiska streptokocker Бета-гемолитический стрептококк
unknown Gram-negatives TRUE TRUE FALSE TRUE unbekannte Gramnegativen onbekende Gram-negatieven Gram negativos desconocidos Gram negativi sconosciuti Gram négatifs inconnus Gram negativos desconhecidos ukendte Gram-negative unknown Gram-negatives TRUE TRUE FALSE TRUE unbekannte Gramnegativen onbekende Gram-negatieven Gram negativos desconocidos Gram negativi sconosciuti Gram négatifs inconnus Gram negativos desconhecidos ukendte Gram-negative okända gramnegativa bakterier неизвестные грамотрицательные
unknown Gram-positives TRUE TRUE FALSE TRUE unbekannte Grampositiven onbekende Gram-positieven Gram positivos desconocidos Gram positivi sconosciuti Gram positifs inconnus Gram positivos desconhecidos ukendte Gram-positive unknown Gram-positives TRUE TRUE FALSE TRUE unbekannte Grampositiven onbekende Gram-positieven Gram positivos desconocidos Gram positivi sconosciuti Gram positifs inconnus Gram positivos desconhecidos ukendte Gram-positive okända Gram-positiva неизвестные грамположительные
unknown fungus TRUE TRUE FALSE TRUE unbekannter Pilze onbekende schimmel hongo desconocido fungo sconosciuto champignon inconnu fungo desconhecido ukendt svamp unknown fungus TRUE TRUE FALSE TRUE unbekannter Pilze onbekende schimmel hongo desconocido fungo sconosciuto champignon inconnu fungo desconhecido ukendt svamp Okänd svamp неизвестный грибок
unknown yeast TRUE TRUE FALSE TRUE unbekannte Hefe onbekende gist levadura desconocida lievito sconosciuto levure inconnue levedura desconhecida ukendt gær unknown yeast TRUE TRUE FALSE TRUE unbekannte Hefe onbekende gist levadura desconocida lievito sconosciuto levure inconnue levedura desconhecida ukendt gær Okänd jäst неизвестные дрожжи
unknown name TRUE TRUE FALSE TRUE unbekannte Name onbekende naam nombre desconocido nome sconosciuto nom inconnu nome desconhecido ukendt navn unknown name TRUE TRUE FALSE TRUE unbekannte Name onbekende naam nombre desconocido nome sconosciuto nom inconnu nome desconhecido ukendt navn okänt namn неизвестное название
unknown kingdom TRUE TRUE FALSE TRUE unbekanntes Reich onbekend koninkrijk reino desconocido regno sconosciuto règme inconnu reino desconhecido ukendt kongerige unknown kingdom TRUE TRUE FALSE TRUE unbekanntes Reich onbekend koninkrijk reino desconocido regno sconosciuto règme inconnu reino desconhecido ukendt kongerige okänt rike неизвестное царство
unknown phylum TRUE TRUE FALSE TRUE unbekannter Stamm onbekend fylum filo desconocido phylum sconosciuto embranchement inconnu filo desconhecido ukendt stamme unknown phylum TRUE TRUE FALSE TRUE unbekannter Stamm onbekend fylum filo desconocido phylum sconosciuto embranchement inconnu filo desconhecido ukendt stamme okänt fylum неизвестный филум
unknown class TRUE TRUE FALSE TRUE unbekannte Klasse onbekende klasse clase desconocida classe sconosciuta classe inconnue classe desconhecida ukendt klasse unknown class TRUE TRUE FALSE TRUE unbekannte Klasse onbekende klasse clase desconocida classe sconosciuta classe inconnue classe desconhecida ukendt klasse okänd klass неизвестный класс
unknown order TRUE TRUE FALSE TRUE unbekannte Ordnung onbekende orde orden desconocido ordine sconosciuto ordre inconnu ordem desconhecido ukendt orden unknown order TRUE TRUE FALSE TRUE unbekannte Ordnung onbekende orde orden desconocido ordine sconosciuto ordre inconnu ordem desconhecido ukendt orden okänd ordning неизвестный порядок
unknown family TRUE TRUE FALSE TRUE unbekannte Familie onbekende familie familia desconocida famiglia sconosciuta famille inconnue família desconhecida ukendt familie unknown family TRUE TRUE FALSE TRUE unbekannte Familie onbekende familie familia desconocida famiglia sconosciuta famille inconnue família desconhecida ukendt familie okänd familj неизвестное семейство
unknown genus TRUE TRUE FALSE TRUE unbekannte Gattung onbekend geslacht género desconocido genere sconosciuto genre inconnu gênero desconhecido ukendt slægt unknown genus TRUE TRUE FALSE TRUE unbekannte Gattung onbekend geslacht género desconocido genere sconosciuto genre inconnu gênero desconhecido ukendt slægt okänt släkte неизвестный род
unknown species TRUE TRUE FALSE TRUE unbekannte Art onbekende soort especie desconocida specie sconosciute espèce inconnue espécies desconhecida ukendt art unknown species TRUE TRUE FALSE TRUE unbekannte Art onbekende soort especie desconocida specie sconosciute espèce inconnue espécies desconhecida ukendt art okänd art неизвестный вид
unknown subspecies TRUE TRUE FALSE TRUE unbekannte Unterart onbekende ondersoort subespecie desconocida sottospecie sconosciute sous-espèce inconnue subespécies desconhecida ukendt underart unknown subspecies TRUE TRUE FALSE TRUE unbekannte Unterart onbekende ondersoort subespecie desconocida sottospecie sconosciute sous-espèce inconnue subespécies desconhecida ukendt underart okänd underart неизвестный подвид
unknown rank TRUE TRUE FALSE TRUE unbekannter Rang onbekende rang rango desconocido grado sconosciuto rang inconnu classificação desconhecido ukendt rang unknown rank TRUE TRUE FALSE TRUE unbekannter Rang onbekende rang rango desconocido grado sconosciuto rang inconnu classificação desconhecido ukendt rang okänd rang неизвестный ранг
group TRUE TRUE FALSE TRUE Gruppe groep grupo gruppo groupe grupo gruppe group TRUE TRUE FALSE TRUE Gruppe groep grupo gruppo groupe grupo gruppe grupp группа
CoNS FALSE TRUE FALSE TRUE KNS CNS SCN CoNS FALSE TRUE FALSE TRUE KNS CNS SCN KNS KNS КОС
CoPS FALSE TRUE FALSE TRUE KPS CPS SCP CoPS FALSE TRUE FALSE TRUE KPS CPS SCP KPS KPS КПС
Gram-negative TRUE TRUE FALSE FALSE Gramnegativ Gram-negatief Gram negativo Gram negativo Gram négatif Gram negativo Gram-negativ Gram-negative TRUE TRUE FALSE FALSE Gramnegativ Gram-negatief Gram negativo Gram negativo Gram négatif Gram negativo Gram-negativ Gram-negativ Грамотрицательные
Gram-positive TRUE TRUE FALSE FALSE Grampositiv Gram-positief Gram positivo Gram positivo Gram positif Gram positivo Gram-positiv Gram-positive TRUE TRUE FALSE FALSE Grampositiv Gram-positief Gram positivo Gram positivo Gram positif Gram positivo Gram-positiv Gram-positiv Грамположительные
^Bacteria$ TRUE TRUE FALSE FALSE Bakterien Bacteriën Bacterias Batteri Bactéries Bactérias Bakterier ^Bacteria$ TRUE TRUE FALSE FALSE Bakterien Bacteriën Bacterias Batteri Bactéries Bactérias Bakterier Bakterier Бактерии
^Fungi$ TRUE TRUE FALSE FALSE Pilze Schimmels Hongos Funghi Champignons Fungos Støbeforme ^Fungi$ TRUE TRUE FALSE FALSE Pilze Schimmels Hongos Funghi Champignons Fungos Støbeforme Svampar Грибы
^Yeasts$ TRUE TRUE FALSE FALSE Hefen Gisten Levaduras Lieviti Levures Leveduras Gær ^Yeasts$ TRUE TRUE FALSE FALSE Hefen Gisten Levaduras Lieviti Levures Leveduras Gær Jästdjur Животные
^Protozoa$ TRUE TRUE FALSE FALSE Protozoen Protozoën Protozoarios Protozoi Protozoaires Protozoários Protozoer ^Protozoa$ TRUE TRUE FALSE FALSE Protozoen Protozoën Protozoarios Protozoi Protozoaires Protozoários Protozoer Protozoer Протозоа
biogroup TRUE TRUE FALSE FALSE Biogruppe biogroep biogrupo biogruppo biogroupe biogrupo biogruppe biogroup TRUE TRUE FALSE FALSE Biogruppe biogroep biogrupo biogruppo biogroupe biogrupo biogruppe biogrupp биогруппа
biotype TRUE TRUE FALSE FALSE Biotyp biotipo biotipo biótipo biotype TRUE TRUE FALSE FALSE Biotyp biotipo biotipo biótipo biotype biotyp биотип
vegetative TRUE TRUE FALSE FALSE vegetativ vegetatief vegetativo vegetativo végétatif vegetativo vegetative TRUE TRUE FALSE FALSE vegetativ vegetatief vegetativo vegetativo végétatif vegetativo vegetativ vegetativ вегетативный
([([ ]*?)group TRUE TRUE FALSE FALSE \\1Gruppe \\1groep \\1grupo \\1gruppo \\1groupe \\1grupo ([([ ]*?)group TRUE TRUE FALSE FALSE \\1Gruppe \\1groep \\1grupo \\1gruppo \\1groupe \\1grupo \\1gruppe \\1grupp \\1группа
([([ ]*?)Group TRUE TRUE FALSE FALSE \\1Gruppe \\1Groep \\1Grupo \\1Gruppo \\1Groupe \\1Grupo ([([ ]*?)Group TRUE TRUE FALSE FALSE \\1Gruppe \\1Groep \\1Grupo \\1Gruppo \\1Groupe \\1Grupo \\1Gruppe \\1Grupp \\1Группа
no .*growth TRUE FALSE FALSE FALSE keine? .*wachstum geen .*groei no .*crecimientonon sem .*crescimento pas .*croissance sem .*crescimento no .*growth TRUE FALSE FALSE FALSE keine? .*wachstum geen .*groei no .*crecimientonon sem .*crescimento pas .*croissance sem .*crescimento ingen .*vækst ingen .*tillväxt отсутствие.*роста
no|not TRUE FALSE FALSE FALSE keine? geen|niet no|sin sem non sem no|not TRUE FALSE FALSE FALSE keine? geen|niet no|sin sem non sem nej|ikke nej|inte нет?
Intermediate TRUE FALSE FALSE FALSE Mittlere Intermediair Intermedio Intermediate TRUE FALSE FALSE FALSE Mittlere Intermediair Intermedio
Susceptible, incr. exp. FALSE TRUE FALSE FALSE Empfindlich, erh Belastung Gevoelig, hoge dosis Susceptible, incr. exp. FALSE TRUE FALSE FALSE Empfindlich, erh Belastung Gevoelig, hoge dosis
susceptible, incr. exp. FALSE TRUE FALSE FALSE empfindlich, erh Belastung gevoelig, hoge dosis susceptible, incr. exp. FALSE TRUE FALSE FALSE empfindlich, erh Belastung gevoelig, hoge dosis
Susceptible TRUE FALSE FALSE FALSE Empfindlich Gevoelig Susceptible Susceptible TRUE FALSE FALSE FALSE Empfindlich Gevoelig Susceptible
Incr. exposure TRUE FALSE FALSE FALSE Empfindlich, erh Belastung 'Incr. exposure' 'Incr. exposure' Incr. exposure TRUE FALSE FALSE FALSE Empfindlich, erh Belastung 'Incr. exposure' 'Incr. exposure'
Resistant TRUE FALSE FALSE FALSE Resistent Resistent Resistente Resistant TRUE FALSE FALSE FALSE Resistent Resistent Resistente
antibiotic TRUE TRUE FALSE FALSE Antibiotikum antibioticum antibiótico antibiotico antibiotique antibiótico antibiotikum antibiotic TRUE TRUE FALSE FALSE Antibiotikum antibioticum antibiótico antibiotico antibiotique antibiótico antibiotikum antibiotika антибиотик
Antibiotic TRUE TRUE FALSE FALSE Antibiotikum Antibioticum Antibiótico Antibiotico Antibiotique Antibiótico Antibiotikum Antibiotic TRUE TRUE FALSE FALSE Antibiotikum Antibioticum Antibiótico Antibiotico Antibiotique Antibiótico Antibiotikum Antibiotika Антибиотик
Drug TRUE TRUE FALSE FALSE Medikament Middel Fármaco Droga Médicament Droga Lægemiddel Drug TRUE TRUE FALSE FALSE Medikament Middel Fármaco Droga Médicament Droga Lægemiddel Läkemedel Лекарство
drug TRUE TRUE FALSE FALSE Medikament middel fármaco droga médicament droga lægemiddel drug TRUE TRUE FALSE FALSE Medikament middel fármaco droga médicament droga lægemiddel läkemedel лекарство
Frequency FALSE TRUE FALSE FALSE Zahl Aantal Frecuencia Frequenza Fréquence Frequência Frekvens Frequency FALSE TRUE FALSE FALSE Zahl Aantal Frecuencia Frequenza Fréquence Frequência Frekvens Frekvens Частота
Minimum Inhibitory Concentration (mg/L) FALSE FALSE FALSE FALSE Minimale Hemm-Konzentration (mg/L) Minimale inhiberende concentratie (mg/L) Concentración mínima inhibitoria (mg/L) Concentrazione minima inibitoria (mg/L) Concentration minimale inhibitrice (mg/L) Concentração Inibitória Mínima (mg/L) Mindste hæmmende koncentration (mg/L) Minimum Inhibitory Concentration (mg/L) FALSE FALSE FALSE FALSE Minimale Hemm-Konzentration (mg/L) Minimale inhiberende concentratie (mg/L) Concentración mínima inhibitoria (mg/L) Concentrazione minima inibitoria (mg/L) Concentration minimale inhibitrice (mg/L) Concentração Inibitória Mínima (mg/L) Mindste hæmmende koncentration (mg/L) Minsta hämmande koncentration (mg/L) Минимальная ингибирующая концентрация (мг/л)
Disk diffusion diameter (mm) FALSE FALSE FALSE FALSE Durchmesser der Scheibenzone (mm) Diameter diskzone (mm) Diámetro de difusión en disco (mm) Diametro di diffusione del disco (mm) Diamètre de diffusion en disque (mm) Diâmetro de difusão do disco (mm) Diskdiffusionsdiameter (mm) Disk diffusion diameter (mm) FALSE FALSE FALSE FALSE Durchmesser der Scheibenzone (mm) Diameter diskzone (mm) Diámetro de difusión en disco (mm) Diametro di diffusione del disco (mm) Diamètre de diffusion en disque (mm) Diâmetro de difusão do disco (mm) Diskdiffusionsdiameter (mm) Diskdiffusionsdiameter (mm) Диаметр диффузии диска (мм)
Antimicrobial Interpretation FALSE FALSE FALSE FALSE Antimikrobielle Auswertung Antimicrobiële interpretatie Interpretación antimicrobiana Interpretazione antimicrobica Interprétation antimicrobienne Interpretação Antimicrobiana Antimikrobiel fortolkning Antimicrobial Interpretation FALSE FALSE FALSE FALSE Antimikrobielle Auswertung Antimicrobiële interpretatie Interpretación antimicrobiana Interpretazione antimicrobica Interprétation antimicrobienne Interpretação Antimicrobiana Antimikrobiel fortolkning Antimikrobiell tolkning Антимикробная интерпретация
4-aminosalicylic acid FALSE TRUE TRUE FALSE 4-Aminosalicylsäure 4-aminosalicylzuur Ácido 4-aminosalicílico Acido 4-aminosalicilico Acide 4-aminosalicylique Ácido 4-aminosalicílico 4-aminosalicylsyre 4-aminosalicylic acid FALSE TRUE TRUE FALSE 4-Aminosalicylsäure 4-aminosalicylzuur Ácido 4-aminosalicílico Acido 4-aminosalicilico Acide 4-aminosalicylique Ácido 4-aminosalicílico 4-aminosalicylsyre 4-aminosalicylsyra 4-аминосалициловая кислота
Adefovir dipivoxil FALSE TRUE TRUE FALSE Adefovir Dipivoxil Adefovir Adefovir dipivoxil Adefovir dipivoxil Adéfovir dipivoxil Adefovir dipivoxil Adefovir dipivoxil Adefovir dipivoxil FALSE TRUE TRUE FALSE Adefovir Dipivoxil Adefovir Adefovir dipivoxil Adefovir dipivoxil Adéfovir dipivoxil Adefovir dipivoxil Adefovir dipivoxil Adefovir dipivoxil Адефовир дипивоксил
Aldesulfone sodium FALSE TRUE TRUE FALSE Aldesulfon-Natrium Aldesulfon Aldesulfona sódica Aldesulfone sodio Aldésulfone sodique Aldesulfona de sódio Aldesulfon-natrium Aldesulfone sodium FALSE TRUE TRUE FALSE Aldesulfon-Natrium Aldesulfon Aldesulfona sódica Aldesulfone sodio Aldésulfone sodique Aldesulfona de sódio Aldesulfon-natrium Aldesulfonnatrium Альдесульфон натрия
Amikacin FALSE TRUE TRUE FALSE Amikacin Amikacine Amikacina Amikacin Amikacine Amikacin Amikacin Amikacin FALSE TRUE TRUE FALSE Amikacin Amikacine Amikacina Amikacin Amikacine Amikacin Amikacin Amikacin Амикацин
Amoxicillin FALSE TRUE TRUE FALSE Amoxicillin Amoxicilline Amoxicilina Amoxicillina Amoxicilline Amoxicilina Amoxicillin Amoxicillin FALSE TRUE TRUE FALSE Amoxicillin Amoxicilline Amoxicilina Amoxicillina Amoxicilline Amoxicilina Amoxicillin Amoxicillin Амоксициллин
Amoxicillin/beta-lactamase inhibitor FALSE TRUE TRUE FALSE Amoxicillin/Beta-Lactamase-Hemmer Amoxicilline/enzymremmer Amoxicilina/inhib. de la beta-lactamasa Amoxicillina/inib. d. beta-lattamasi Amoxicilline/inhib. de bêta-lactamase Amoxicilina/inibid. da beta-lactamase Amoxicillin/beta-lactamasehæmmer Amoxicillin/beta-lactamase inhibitor FALSE TRUE TRUE FALSE Amoxicillin/Beta-Lactamase-Hemmer Amoxicilline/enzymremmer Amoxicilina/inhib. de la beta-lactamasa Amoxicillina/inib. d. beta-lattamasi Amoxicilline/inhib. de bêta-lactamase Amoxicilina/inibid. da beta-lactamase Amoxicillin/beta-lactamasehæmmer Amoxicillin/betalaktamashämmare Амоксициллин/ингибитор бета-лактамаз
Amphotericin B FALSE TRUE TRUE FALSE Amphotericin B Amfotericine B Anfotericina B Amfotericina B Amphotéricine B Anfotericina B Amfotericin B Amphotericin B FALSE TRUE TRUE FALSE Amphotericin B Amfotericine B Anfotericina B Amfotericina B Amphotéricine B Anfotericina B Amfotericin B Amfotericin B Амфотерицин В
Ampicillin FALSE TRUE TRUE FALSE Ampicillin Ampicilline Ampicilina Ampicillina Ampicilline Ampicilina Ampicillin Ampicillin FALSE TRUE TRUE FALSE Ampicillin Ampicilline Ampicilina Ampicillina Ampicilline Ampicilina Ampicillin Ampicillin Ампициллин
Ampicillin/beta-lactamase inhibitor FALSE TRUE TRUE FALSE Ampicillin/Beta-Laktamase-Hemmer Ampicilline/enzymremmer Ampicilina/inhib. de la beta-lactamasa Ampicillina/inib. d. beta-lattamasi Ampicilline/inhib. de bêta-lactamase Ampicilina/inibid. da beta-lactamase Ampicillin/beta-lactamasehæmmer Ampicillin/beta-lactamase inhibitor FALSE TRUE TRUE FALSE Ampicillin/Beta-Laktamase-Hemmer Ampicilline/enzymremmer Ampicilina/inhib. de la beta-lactamasa Ampicillina/inib. d. beta-lattamasi Ampicilline/inhib. de bêta-lactamase Ampicilina/inibid. da beta-lactamase Ampicillin/beta-lactamasehæmmer Ampicillin/beta-laktamashämmare Ампициллин/ингибитор бета-лактамазы
Anidulafungin FALSE TRUE TRUE FALSE Anidulafungin Anidulafungine Anidulafungina Anidulafungin Anidulafungine Anidulafungin Anidulafungin Anidulafungin FALSE TRUE TRUE FALSE Anidulafungin Anidulafungine Anidulafungina Anidulafungin Anidulafungine Anidulafungin Anidulafungin Anidulafungin Анидулафунгин
Azidocillin FALSE TRUE TRUE FALSE Azidocillin Azidocilline Azidocilina Azidocillina Azidocilline Azidocillin Azidocillin Azidocillin FALSE TRUE TRUE FALSE Azidocillin Azidocilline Azidocilina Azidocillina Azidocilline Azidocillin Azidocillin Azidocillin Азидоциллин
Azithromycin FALSE TRUE TRUE FALSE Azithromycin Azitromycine Azitromicina Azitromicina Azithromycine Azitromicina Azithromycin Azithromycin FALSE TRUE TRUE FALSE Azithromycin Azitromycine Azitromicina Azitromicina Azithromycine Azitromicina Azithromycin Azitromycin Азитромицин
Azlocillin FALSE TRUE TRUE FALSE Azlocillin Azlocilline Azlocilina Azlocillina Azlocilline Azlocillin Azlocillin Azlocillin FALSE TRUE TRUE FALSE Azlocillin Azlocilline Azlocilina Azlocillina Azlocilline Azlocillin Azlocillin Azlocillin Азлоциллин
Bacampicillin FALSE TRUE TRUE FALSE Bacampicillin Bacampicilline Bacampicilina Bacampicillina Bacampicilline Bacampicilina Bacampicillin Bacampicillin FALSE TRUE TRUE FALSE Bacampicillin Bacampicilline Bacampicilina Bacampicillina Bacampicilline Bacampicilina Bacampicillin Bacampicillin Бакампициллин
Bacitracin FALSE TRUE TRUE FALSE Bacitracin Bacitracine Bacitracina Bacitracina Bacitracine Bacitracin Bacitracin Bacitracin FALSE TRUE TRUE FALSE Bacitracin Bacitracine Bacitracina Bacitracina Bacitracine Bacitracin Bacitracin Bacitracin Бацитрацин
Benzathine benzylpenicillin FALSE TRUE TRUE FALSE Benzathin-Benzylpenicillin Benzylpenicillinebenzathine Bencilpenicilina benzatínica Benzatina benzilpenicillina Benzathine benzylpénicilline Benzatina benzatina benzilpenicilina Benzathinbenzylpenicillin Benzathine benzylpenicillin FALSE TRUE TRUE FALSE Benzathin-Benzylpenicillin Benzylpenicillinebenzathine Bencilpenicilina benzatínica Benzatina benzilpenicillina Benzathine benzylpénicilline Benzatina benzatina benzilpenicilina Benzathinbenzylpenicillin Benzathinbenzylpenicillin Бензатин бензилпенициллин
Benzathine phenoxymethylpenicillin FALSE TRUE TRUE FALSE Benzathin-Phenoxymethylpenicillin Fenoxymethylpenicillinebenzathine Fenoximetilpenicilina benzatínica Benzatina fenossimetilpenicillina Phénoxyméthylpénicilline benzathine Benzatina fenoximetilpenicilina Benzathinfenoxymethylpenicillin Benzathine phenoxymethylpenicillin FALSE TRUE TRUE FALSE Benzathin-Phenoxymethylpenicillin Fenoxymethylpenicillinebenzathine Fenoximetilpenicilina benzatínica Benzatina fenossimetilpenicillina Phénoxyméthylpénicilline benzathine Benzatina fenoximetilpenicilina Benzathinfenoxymethylpenicillin Bensathinfenoximetylpenicillin Бензатин феноксиметилпенициллин
Benzylpenicillin FALSE TRUE TRUE FALSE Benzylpenicillin Benzylpenicilline Bencilpenicilina Benzilpenicillina Benzylpénicilline Benzilpenicilina Benzylpenicillin Benzylpenicillin FALSE TRUE TRUE FALSE Benzylpenicillin Benzylpenicilline Bencilpenicilina Benzilpenicillina Benzylpénicilline Benzilpenicilina Benzylpenicillin Bensylpenicillin Бензилпенициллин
Calcium aminosalicylate FALSE TRUE TRUE FALSE Kalzium-Aminosalicylat Aminosalicylzuur Aminosalicilato de calcio Calcio aminosalicilato Aminosalicylate de calcium Aminosalicilato de cálcio Calciumaminosalicylat Calcium aminosalicylate FALSE TRUE TRUE FALSE Kalzium-Aminosalicylat Aminosalicylzuur Aminosalicilato de calcio Calcio aminosalicilato Aminosalicylate de calcium Aminosalicilato de cálcio Calciumaminosalicylat Kalciumaminosalicylat Аминосалицилат кальция
Capreomycin FALSE TRUE TRUE FALSE Capreomycin Capreomycine Capreomicina Capreomicina Capréomycine Capreomicina Capreomycin Capreomycin FALSE TRUE TRUE FALSE Capreomycin Capreomycine Capreomicina Capreomicina Capréomycine Capreomicina Capreomycin Kapreomycin Капреомицин
Carbenicillin FALSE TRUE TRUE FALSE Carbenicillin Carbenicilline Carbenicilina Carbenicillina Carbénicilline Carbenicilina Carbenicillin Carbenicillin FALSE TRUE TRUE FALSE Carbenicillin Carbenicilline Carbenicilina Carbenicillina Carbénicilline Carbenicilina Carbenicillin Karbenicillin Карбенициллин
Carindacillin FALSE TRUE TRUE FALSE Carindacillin Carindacilline Carindacilina Carindacillina Carindacilline Carindacillin Carindacillin Carindacillin FALSE TRUE TRUE FALSE Carindacillin Carindacilline Carindacilina Carindacillina Carindacilline Carindacillin Carindacillin Carindacillin Кариндациллин
Caspofungin FALSE TRUE TRUE FALSE Caspofungin Caspofungine Caspofungina Caspofungin Caspofungine Caspofungin Caspofungin Caspofungin FALSE TRUE TRUE FALSE Caspofungin Caspofungine Caspofungina Caspofungin Caspofungine Caspofungin Caspofungin Caspofungin Каспофунгин
Ce(f|ph)acetrile TRUE TRUE TRUE FALSE Cefacetril Cefacetril Cefacetrilo Cefacetrile Céphacétrile Cephacetrile Cephacetril Ce(f|ph)acetrile TRUE TRUE TRUE FALSE Cefacetril Cefacetril Cefacetrilo Cefacetrile Céphacétrile Cephacetrile Cephacetril Cephacetril Цефацетрил
Ce(f|ph)alotin TRUE TRUE TRUE FALSE Cefalotin Cefalotine Cefalotina Cefalotina Céphalotine Cefalotina Cephalotin Ce(f|ph)alotin TRUE TRUE TRUE FALSE Cefalotin Cefalotine Cefalotina Cefalotina Céphalotine Cefalotina Cephalotin Cefalotin Цефалотин
Ce(f|ph)amandole TRUE TRUE TRUE FALSE Cefamandol Cefamandol Cefamandole Cephamandole Céphamandole Cephamandole Cephamandol Ce(f|ph)amandole TRUE TRUE TRUE FALSE Cefamandol Cefamandol Cefamandole Cephamandole Céphamandole Cephamandole Cephamandol Cephamandol Цефамандол
Ce(f|ph)apirin TRUE TRUE TRUE FALSE Cefapirin Cefapirine Cefapirina Cefapirina Céphapirine Cephapirin Cephapirin Ce(f|ph)apirin TRUE TRUE TRUE FALSE Cefapirin Cefapirine Cefapirina Cefapirina Céphapirine Cephapirin Cephapirin Cephapirin Цефапирин
Ce(f|ph)azedone TRUE TRUE TRUE FALSE Cefazedon Cefazedon Cefazedona Cefazedone Céphazédone Cephazedone Cephazedon Ce(f|ph)azedone TRUE TRUE TRUE FALSE Cefazedon Cefazedon Cefazedona Cefazedone Céphazédone Cephazedone Cephazedon Cephazedon Цефазедон
Ce(f|ph)azolin TRUE TRUE TRUE FALSE Cefazolin Cefazoline Cefazolina Cephazolin Céphazoline Cephazolin Cephazolin Ce(f|ph)azolin TRUE TRUE TRUE FALSE Cefazolin Cefazoline Cefazolina Cephazolin Céphazoline Cephazolin Cephazolin Cephazolin Цефазолин
Ce(f|ph)alothin TRUE TRUE TRUE FALSE Cefalothin Cefalotine Cefalotina Cefalotina Céphalothine Cephalothin Cephalothin Ce(f|ph)alothin TRUE TRUE TRUE FALSE Cefalothin Cefalotine Cefalotina Cefalotina Céphalothine Cephalothin Cephalothin Kefalotin Цефалотин
Ce(f|ph)alexin TRUE TRUE TRUE FALSE Cefalexin Cefalexine Cefalexina Cephalexin Céphalexine Cephalexin Cephalexin Ce(f|ph)alexin TRUE TRUE TRUE FALSE Cefalexin Cefalexine Cefalexina Cephalexin Céphalexine Cephalexin Cephalexin Cephalexin Цефалексин
Ce(f|ph)epime TRUE TRUE TRUE FALSE Cefepim Cefepim Cefepime Cephepime Céphépime Cephepime Cephepime Ce(f|ph)epime TRUE TRUE TRUE FALSE Cefepim Cefepim Cefepime Cephepime Céphépime Cephepime Cephepime Cephepim Цефепим
Ce(f|ph)ixime TRUE TRUE TRUE FALSE Cefixim Cefixim Cefixima Cephixime Céphixime Cephixime Cephixim Ce(f|ph)ixime TRUE TRUE TRUE FALSE Cefixim Cefixim Cefixima Cephixime Céphixime Cephixime Cephixim Cephixim Цефиксим
Ce(f|ph)menoxime TRUE TRUE TRUE FALSE Cefmenoxim Cefmenoxim Cefmenoxima Cephmenoxime Céphénoxime Cephmenoxime Cephmenoxim Ce(f|ph)menoxime TRUE TRUE TRUE FALSE Cefmenoxim Cefmenoxim Cefmenoxima Cephmenoxime Céphénoxime Cephmenoxime Cephmenoxim Cephmenoxim Цефменоксим
Ce(f|ph)metazole TRUE TRUE TRUE FALSE Cefmetazol Cefmetazol Cefmetazol Cephmetazole Céphmétazole Cefmetazole Cephmetazol Ce(f|ph)metazole TRUE TRUE TRUE FALSE Cefmetazol Cefmetazol Cefmetazol Cephmetazole Céphmétazole Cefmetazole Cephmetazol Cephmetazol Цефметазол
Ce(f|ph)odizime TRUE TRUE TRUE FALSE Cefodizim Cefodizim Cefodixima Cephodizime Céphodizime Cephodizime Cephodizim Ce(f|ph)odizime TRUE TRUE TRUE FALSE Cefodizim Cefodizim Cefodixima Cephodizime Céphodizime Cephodizime Cephodizim Cephodizim Цефодизим
Ce(f|ph)onicid TRUE TRUE TRUE FALSE Cefonicid Cefonicide Cefonicida Cephonicid Céphonicide Cefonicid Cephonicid Ce(f|ph)onicid TRUE TRUE TRUE FALSE Cefonicid Cefonicide Cefonicida Cephonicid Céphonicide Cefonicid Cephonicid Cephonicid Цефонизид
Ce(f|ph)operazone TRUE TRUE TRUE FALSE Cefoperazon Cefoperazon Cefoperazona Cephoperazone Céphopérazone Cephoperazone Cephoperazon Ce(f|ph)operazone TRUE TRUE TRUE FALSE Cefoperazon Cefoperazon Cefoperazona Cephoperazone Céphopérazone Cephoperazone Cephoperazon Cephoperazon Цефоперазон
Ce(f|ph)operazone/beta-lactamase inhibitor TRUE TRUE TRUE FALSE Cefoperazon/Beta-Lactamase-Hemmer Cefoperazon/enzymremmer Cefoperazona/inhib. de betalactamasas Cephoperazone/inib. d. beta-lattamasi Céphopérazone/inhib. de bêta-lactamase Cephoperazona/inibid. da beta-lactamase Cephoperazon/beta-lactamasehæmmer Ce(f|ph)operazone/beta-lactamase inhibitor TRUE TRUE TRUE FALSE Cefoperazon/Beta-Lactamase-Hemmer Cefoperazon/enzymremmer Cefoperazona/inhib. de betalactamasas Cephoperazone/inib. d. beta-lattamasi Céphopérazone/inhib. de bêta-lactamase Cephoperazona/inibid. da beta-lactamase Cephoperazon/beta-lactamasehæmmer Cefoperazon/beta-laktamashämmare Цефоперазон/ингибитор бета-лактамаз
Ce(f|ph)otaxime TRUE TRUE TRUE FALSE Cefotaxim Cefotaxim Cefotaxima Cephotaxime Céphotaxime Cephotaxime Cephotaxim Ce(f|ph)otaxime TRUE TRUE TRUE FALSE Cefotaxim Cefotaxim Cefotaxima Cephotaxime Céphotaxime Cephotaxime Cephotaxim Cephotaxim Цефотаксим
Ce(f|ph)oxitin TRUE TRUE TRUE FALSE Cefoxitin Cefoxitine Cefoxitina Cefossitina Céphoxitine Cephoxitin Cephoxitin Ce(f|ph)oxitin TRUE TRUE TRUE FALSE Cefoxitin Cefoxitine Cefoxitina Cefossitina Céphoxitine Cephoxitin Cephoxitin Cephoxitin Цефокситин
Ce(f|ph)pirome TRUE TRUE TRUE FALSE Cefpirom Cefpirom Cephpirome Cephpirome Céphpirome Cefpirome Cephpirom Ce(f|ph)pirome TRUE TRUE TRUE FALSE Cefpirom Cefpirom Cephpirome Cephpirome Céphpirome Cefpirome Cephpirom Cephpirom Цефпиром
Ce(f|ph)podoxime TRUE TRUE TRUE FALSE Cefpodoxim Cefpodoxim Cefpodoxima Cephpodoxime Céphpodoxime Cephpodoxime Cephpodoxim Ce(f|ph)podoxime TRUE TRUE TRUE FALSE Cefpodoxim Cefpodoxim Cefpodoxima Cephpodoxime Céphpodoxime Cephpodoxime Cephpodoxim Cephpodoxim Цефподоксим
Ce(f|ph)radine TRUE TRUE TRUE FALSE Cefradin Cefradine Cefradina Cefradina Céphradine Cephradine Cephradin Ce(f|ph)radine TRUE TRUE TRUE FALSE Cefradin Cefradine Cefradina Cefradina Céphradine Cephradine Cephradin Cephradin Цефрадин
Ce(f|ph)sulodin TRUE TRUE TRUE FALSE Cefsulodin Cefsulodine Cefsulodina Cephsulodin Céphsulodine Cephsulodin Cephsulodin Ce(f|ph)sulodin TRUE TRUE TRUE FALSE Cefsulodin Cefsulodine Cefsulodina Cephsulodin Céphsulodine Cephsulodin Cephsulodin Cephsulodin Цефсулодин
Ce(f|ph)tazidime TRUE TRUE TRUE FALSE Ceftazidim Ceftazidim Ceftazidima Ceftazidima Céphtazidime Ceftazidima Cephtazidim Ce(f|ph)tazidime TRUE TRUE TRUE FALSE Ceftazidim Ceftazidim Ceftazidima Ceftazidima Céphtazidime Ceftazidima Cephtazidim Cephtazidim Цефтазидим
Ce(f|ph)tezole TRUE TRUE TRUE FALSE Ceftezol Ceftezol Ceftezol Cephtezole Céphtézole Ceftezole Cephtezol Ce(f|ph)tezole TRUE TRUE TRUE FALSE Ceftezol Ceftezol Ceftezol Cephtezole Céphtézole Ceftezole Cephtezol Cephtezole Цефтезол
Ce(f|ph)tizoxime TRUE TRUE TRUE FALSE Ceftizoxim Ceftizoxim Ceftizoxima Cephtizoxime Céphtizoxime Cephtizoxime Cephtizoxim Ce(f|ph)tizoxime TRUE TRUE TRUE FALSE Ceftizoxim Ceftizoxim Ceftizoxima Cephtizoxime Céphtizoxime Cephtizoxime Cephtizoxim Cephtizoxim Цефтизоксим
Ce(f|ph)triaxone TRUE TRUE TRUE FALSE Ceftriaxon Ceftriaxon Ceftriaxona Ceftriaxone Céphtriaxone Cefhtriaxone Cephtriaxon Ce(f|ph)triaxone TRUE TRUE TRUE FALSE Ceftriaxon Ceftriaxon Ceftriaxona Ceftriaxone Céphtriaxone Cefhtriaxone Cephtriaxon Ceftriaxon Цефтриаксон
Ce(f|ph)uroxime TRUE TRUE TRUE FALSE Cefuroxim Cefuroxim Cefuroxima Cefuroxima Céphuroxime Cephuroxime Cephuroxim Ce(f|ph)uroxime TRUE TRUE TRUE FALSE Cefuroxim Cefuroxim Cefuroxima Cefuroxima Céphuroxime Cephuroxime Cephuroxim Cefuroxim Цефуроксим
Ce(f|ph)uroxime/metronidazole TRUE TRUE TRUE FALSE Cefuroxim/Metronidazol Cefuroxim/andere antibacteriele middelen Cefuroxima/metronidazol Cefuroxima/metronidazolo Céphuroxime/métronidazole Cephuroxime/metronidazol Cefuroxim/metronidazol Ce(f|ph)uroxime/metronidazole TRUE TRUE TRUE FALSE Cefuroxim/Metronidazol Cefuroxim/andere antibacteriele middelen Cefuroxima/metronidazol Cefuroxima/metronidazolo Céphuroxime/métronidazole Cephuroxime/metronidazol Cefuroxim/metronidazol Cefuroxim/metronidazol Цефуроксим/метронидазол
Chloramphenicol FALSE TRUE TRUE FALSE Chloramphenicol Chlooramfenicol Cloranfenicol Cloramfenicolo Chloramphénicol Cloranfenicol Kloramfenicol Chloramphenicol FALSE TRUE TRUE FALSE Chloramphenicol Chlooramfenicol Cloranfenicol Cloramfenicolo Chloramphénicol Cloranfenicol Kloramfenicol Kloramfenikol Хлорамфеникол
Chlortetracycline FALSE TRUE TRUE FALSE Chlortetracyclin Chloortetracycline Clortetraciclina Clorotetraciclina Chlortétracycline Chlortetracycline Chlortetracyclin Chlortetracycline FALSE TRUE TRUE FALSE Chlortetracyclin Chloortetracycline Clortetraciclina Clorotetraciclina Chlortétracycline Chlortetracycline Chlortetracyclin Klortetracyklin Хлортетрациклин
Cinoxacin FALSE TRUE TRUE FALSE Cinoxacin Cinoxacine Cinoxacina Cinoxacina Cinoxacine Cinoxacin Cinoxacin Cinoxacin FALSE TRUE TRUE FALSE Cinoxacin Cinoxacine Cinoxacina Cinoxacina Cinoxacine Cinoxacin Cinoxacin Cinoxacin Циноксацин
Ciprofloxacin FALSE TRUE TRUE FALSE Ciprofloxacin Ciprofloxacine Ciprofloxacina Ciprofloxacina Ciprofloxacine Ciprofloxacin Ciprofloxacin Ciprofloxacin FALSE TRUE TRUE FALSE Ciprofloxacin Ciprofloxacine Ciprofloxacina Ciprofloxacina Ciprofloxacine Ciprofloxacin Ciprofloxacin Ciprofloxacin Ципрофлоксацин
Clarithromycin FALSE TRUE TRUE FALSE Clarithromycin Claritromycine Claritromicina Claritromicina Clarithromycine Claritromicina Clarithromycin Clarithromycin FALSE TRUE TRUE FALSE Clarithromycin Claritromycine Claritromicina Claritromicina Clarithromycine Claritromicina Clarithromycin Claritromycin Кларитромицин
Clavulanic acid FALSE TRUE TRUE FALSE Clavulansäure Clavulaanzuur Ácido clavulánico Acido clavulanico Acide clavulanique Ácido clavulânico Clavulansyre Clavulanic acid FALSE TRUE TRUE FALSE Clavulansäure Clavulaanzuur Ácido clavulánico Acido clavulanico Acide clavulanique Ácido clavulânico Clavulansyre Clavulansyra Клавулановая кислота
clavulanic acid FALSE TRUE TRUE FALSE Clavulansäure clavulaanzuur ácido clavulánico acido clavulanico acide clavulanique ácido clavulânico clavulansyre clavulanic acid FALSE TRUE TRUE FALSE Clavulansäure clavulaanzuur ácido clavulánico acido clavulanico acide clavulanique ácido clavulânico clavulansyre clavulansyra клавулановая кислота
Clindamycin FALSE TRUE TRUE FALSE Clindamycin Clindamycine Clindamicina Clindamicina Clindamycine Clindamicina Clindamycin Clindamycin FALSE TRUE TRUE FALSE Clindamycin Clindamycine Clindamicina Clindamicina Clindamycine Clindamicina Clindamycin Clindamycin Клиндамицин
Clometocillin FALSE TRUE TRUE FALSE Clometocillin Clometocilline Clometocilina Clometocillina Clométocilline Clometocillin Clometocillin Clometocillin FALSE TRUE TRUE FALSE Clometocillin Clometocilline Clometocilina Clometocillina Clométocilline Clometocillin Clometocillin Klometocillin Клометоциллин
Clotrimazole FALSE TRUE TRUE FALSE Clotrimazol Clotrimazol Clotrimazol Clotrimazolo Clotrimazole Clotrimazole Clotrimazol Clotrimazole FALSE TRUE TRUE FALSE Clotrimazol Clotrimazol Clotrimazol Clotrimazolo Clotrimazole Clotrimazole Clotrimazol Klotrimazol Клотримазол
Cloxacillin FALSE TRUE TRUE FALSE Cloxacillin Cloxacilline Cloxacilina Cloxacillina Cloxacilline Cloxacillin Cloxacillin Cloxacillin FALSE TRUE TRUE FALSE Cloxacillin Cloxacilline Cloxacilina Cloxacillina Cloxacilline Cloxacillin Cloxacillin Kloxacillin Клоксациллин
Colistin FALSE TRUE TRUE FALSE Colistin Colistine Colistina Colistina Colistine Colistin Colistin Colistin FALSE TRUE TRUE FALSE Colistin Colistine Colistina Colistina Colistine Colistin Colistin Kolistin Колистин
Dapsone FALSE TRUE TRUE FALSE Dapson Dapson Dapsona Dapsone Dapsone Dapsone Dapson Dapsone FALSE TRUE TRUE FALSE Dapson Dapson Dapsona Dapsone Dapsone Dapsone Dapson Dapson Дапсон
Daptomycin FALSE TRUE TRUE FALSE Daptomycin Daptomycine Daptomicina Daptomicina Daptomycine Daptomicina Daptomycin Daptomycin FALSE TRUE TRUE FALSE Daptomycin Daptomycine Daptomicina Daptomicina Daptomycine Daptomicina Daptomycin Daptomycin Даптомицин
Dibekacin FALSE TRUE TRUE FALSE Dibekacin Dibekacine Dibekacina Dibekacin Dibekacine Dibekacin Dibekacin Dibekacin FALSE TRUE TRUE FALSE Dibekacin Dibekacine Dibekacina Dibekacin Dibekacine Dibekacin Dibekacin Dibekacin Дибекацин
Dicloxacillin FALSE TRUE TRUE FALSE Dicloxacillin Dicloxacilline Dicloxacilina Dicloxacillina Dicloxacilline Dicloxacilina Dicloxacillin Dicloxacillin FALSE TRUE TRUE FALSE Dicloxacillin Dicloxacilline Dicloxacilina Dicloxacillina Dicloxacilline Dicloxacilina Dicloxacillin Dikloxacillin Диклоксациллин
Dirithromycin FALSE TRUE TRUE FALSE Dirithromycin Diritromycine Diritromicina Diritromicina Dirithromycine Diritromicina Dirithromycin Dirithromycin FALSE TRUE TRUE FALSE Dirithromycin Diritromycine Diritromicina Diritromicina Dirithromycine Diritromicina Dirithromycin Diritromycin Диритромицин
Econazole FALSE TRUE TRUE FALSE Econazol Econazol Econazol Econazolo Econazole Econazole Econazol Econazole FALSE TRUE TRUE FALSE Econazol Econazol Econazol Econazolo Econazole Econazole Econazol Ekonazol Эконазол
Enoxacin FALSE TRUE TRUE FALSE Enoxacin Enoxacine Enoxacina Enoxacina Enoxacine Enoxacin Enoxacin Enoxacin FALSE TRUE TRUE FALSE Enoxacin Enoxacine Enoxacina Enoxacina Enoxacine Enoxacin Enoxacin Enoxacin Эноксацин
Epicillin FALSE TRUE TRUE FALSE Epicillin Epicilline Epicilina Epicillina Epicilline Epicilina Epicillin Epicillin FALSE TRUE TRUE FALSE Epicillin Epicilline Epicilina Epicillina Epicilline Epicilina Epicillin Epicillin Эпициллин
Erythromycin FALSE TRUE TRUE FALSE Erythromycin Erytromycine Eritromicina Eritromicina Erythromycine Eritromicina Erythromycin Erythromycin FALSE TRUE TRUE FALSE Erythromycin Erytromycine Eritromicina Eritromicina Erythromycine Eritromicina Erythromycin Erytromycin Эритромицин
Ethambutol/isoniazid FALSE TRUE TRUE FALSE Ethambutol/Isoniazid Ethambutol/isoniazide Etambutol/isoniazida Etambutolo/isoniazide Ethambutol/isoniazide Ethambutol/isoniazid Ethambutol/isoniazid Ethambutol/isoniazid FALSE TRUE TRUE FALSE Ethambutol/Isoniazid Ethambutol/isoniazide Etambutol/isoniazida Etambutolo/isoniazide Ethambutol/isoniazide Ethambutol/isoniazid Ethambutol/isoniazid Etambutol/isoniazid Этамбутол/изониазид
Fleroxacin FALSE TRUE TRUE FALSE Fleroxacin Fleroxacine Fleroxacina Fleroxacina Fléroxacine Fleroxacina Fleroxacin Fleroxacin FALSE TRUE TRUE FALSE Fleroxacin Fleroxacine Fleroxacina Fleroxacina Fléroxacine Fleroxacina Fleroxacin Fleroxacin Флероксацин
Flucloxacillin FALSE TRUE TRUE FALSE Flucloxacillin Flucloxacilline Flucloxacilina Flucloxacillina Flucloxacilline Flucloxacillin Flucloxacillin Flucloxacillin FALSE TRUE TRUE FALSE Flucloxacillin Flucloxacilline Flucloxacilina Flucloxacillina Flucloxacilline Flucloxacillin Flucloxacillin Flucloxacillin Флуклоксациллин
Fluconazole FALSE TRUE TRUE FALSE Fluconazol Fluconazol Fluconazol Fluconazolo Fluconazole Fluconazole Fluconazol Fluconazole FALSE TRUE TRUE FALSE Fluconazol Fluconazol Fluconazol Fluconazolo Fluconazole Fluconazole Fluconazol Flukonazol Флуконазол
Flucytosine FALSE TRUE TRUE FALSE Flucytosin Fluorocytosine Flucitosina Flucytosine Flucytosine Flucytosine Flucytosin Flucytosine FALSE TRUE TRUE FALSE Flucytosin Fluorocytosine Flucitosina Flucytosine Flucytosine Flucytosine Flucytosin Flucytosin Флуцитозин
Flurithromycin FALSE TRUE TRUE FALSE Flurithromycin Fluritromycine Fluritromicina Fluritromicina Flurithromycine Fluritromicina Flurithromycin Flurithromycin FALSE TRUE TRUE FALSE Flurithromycin Fluritromycine Fluritromicina Fluritromicina Flurithromycine Fluritromicina Flurithromycin Fluritromycin Флуритромицин
Fosfomycin FALSE TRUE TRUE FALSE Fosfomycin Fosfomycine Fosfomicina Fosfomicina Fosfomycine Fosfomycin Fosfomycin Fosfomycin FALSE TRUE TRUE FALSE Fosfomycin Fosfomycine Fosfomicina Fosfomicina Fosfomycine Fosfomycin Fosfomycin Fosfomycin Фосфомицин
Fusidic acid FALSE TRUE TRUE FALSE Fusidinsäure Fusidinezuur Ácido fusídico Acido fusidico Acide fusidique Ácido fusídico Fusidinsyre Fusidic acid FALSE TRUE TRUE FALSE Fusidinsäure Fusidinezuur Ácido fusídico Acido fusidico Acide fusidique Ácido fusídico Fusidinsyre Fusidinsyra Фузидовая кислота
Gatifloxacin FALSE TRUE TRUE FALSE Gatifloxacin Gatifloxacine Gatifloxacina Gatifloxacina Gatifloxacine Gatifloxacin Gatifloxacin Gatifloxacin FALSE TRUE TRUE FALSE Gatifloxacin Gatifloxacine Gatifloxacina Gatifloxacina Gatifloxacine Gatifloxacin Gatifloxacin Gatifloxacin Гатифлоксацин
Gemifloxacin FALSE TRUE TRUE FALSE Gemifloxacin Gemifloxacine Gemifloxacina Gemifloxacina Gemifloxacine Gemifloxacin Gemifloxacin Gemifloxacin FALSE TRUE TRUE FALSE Gemifloxacin Gemifloxacine Gemifloxacina Gemifloxacina Gemifloxacine Gemifloxacin Gemifloxacin Gemifloxacin Гемифлоксацин
Gentamicin FALSE TRUE TRUE FALSE Gentamicin Gentamicine Gentamicina Gentamicina Gentamicine Gentamicina Gentamicin Gentamicin FALSE TRUE TRUE FALSE Gentamicin Gentamicine Gentamicina Gentamicina Gentamicine Gentamicina Gentamicin Gentamicin Гентамицин
Grepafloxacin FALSE TRUE TRUE FALSE Grepafloxacin Grepafloxacine Grepafloxacina Grepafloxacina Grepafloxacine Grepafloxacin Grepafloxacin Grepafloxacin FALSE TRUE TRUE FALSE Grepafloxacin Grepafloxacine Grepafloxacina Grepafloxacina Grepafloxacine Grepafloxacin Grepafloxacin Grepafloxacin Грепафлоксацин
Hachimycin FALSE TRUE TRUE FALSE Hachimycin Hachimycine Hachimycin Hachimycin Hachimycine Hachimycin Hachimycin Hachimycin FALSE TRUE TRUE FALSE Hachimycin Hachimycine Hachimycin Hachimycin Hachimycine Hachimycin Hachimycin Hachimycin Хатимицин
Hetacillin FALSE TRUE TRUE FALSE Hetacillin Hetacilline Hetacilina Hetacillin Hétacilline Hetacillin Hetacillin Hetacillin FALSE TRUE TRUE FALSE Hetacillin Hetacilline Hetacilina Hetacillin Hétacilline Hetacillin Hetacillin Hetacillin Гетациллин
Imipenem/cilastatin FALSE TRUE TRUE FALSE Imipenem/Cilastatin Imipenem/enzymremmer Imipenem/cilastatina Imipenem/cilastatina Imipénème/cilastatine Imipenem/coteltelatina Imipenem/cilastatin Imipenem/cilastatin FALSE TRUE TRUE FALSE Imipenem/Cilastatin Imipenem/enzymremmer Imipenem/cilastatina Imipenem/cilastatina Imipénème/cilastatine Imipenem/coteltelatina Imipenem/cilastatin Imipenem/cilastatin Имипенем/циластатин
Inosine pranobex FALSE TRUE TRUE FALSE Inosin-Pranobex Inosiplex Inosina pranobex Inosina pranobex Inosine pranobex Pranobex inosine Inosin pranobex Inosine pranobex FALSE TRUE TRUE FALSE Inosin-Pranobex Inosiplex Inosina pranobex Inosina pranobex Inosine pranobex Pranobex inosine Inosin pranobex Inosin pranobex Инозин пранобекс
Isepamicin FALSE TRUE TRUE FALSE Isepamicin Isepamicine Isepamicina Isepamicina Isepamicine Isepamicina Isepamicin Isepamicin FALSE TRUE TRUE FALSE Isepamicin Isepamicine Isepamicina Isepamicina Isepamicine Isepamicina Isepamicin Isepamicin Исепамицин
Isoconazole FALSE TRUE TRUE FALSE Isoconazol Isoconazol Isoconazol Isoconazolo Isoconazole Isoconazole Isoconazol Isoconazole FALSE TRUE TRUE FALSE Isoconazol Isoconazol Isoconazol Isoconazolo Isoconazole Isoconazole Isoconazol Isokonazol Изоконазол
Isoniazid FALSE TRUE TRUE FALSE Isoniazid Isoniazide Isoniazida Isoniazide Isoniazide Isoniazid Isoniazid Isoniazid FALSE TRUE TRUE FALSE Isoniazid Isoniazide Isoniazida Isoniazide Isoniazide Isoniazid Isoniazid Isoniazid Изониазид
Itraconazole FALSE TRUE TRUE FALSE Itraconazol Itraconazol Itraconazol Itraconazolo Itraconazole Itraconazole Itraconazol Itraconazole FALSE TRUE TRUE FALSE Itraconazol Itraconazol Itraconazol Itraconazolo Itraconazole Itraconazole Itraconazol Itrakonazol Итраконазол
Josamycin FALSE TRUE TRUE FALSE Josamycin Josamycine Josamicina Josamicina Josamycine Josamycin Josamycin Josamycin FALSE TRUE TRUE FALSE Josamycin Josamycine Josamicina Josamicina Josamycine Josamycin Josamycin Josamycin Джозамицин
Kanamycin FALSE TRUE TRUE FALSE Kanamycin Kanamycine Kanamicina Kanamicina Kanamycine Kanamycin Kanamycin Kanamycin FALSE TRUE TRUE FALSE Kanamycin Kanamycine Kanamicina Kanamicina Kanamycine Kanamycin Kanamycin Kanamycin Канамицин
Ketoconazole FALSE TRUE TRUE FALSE Ketoconazol Ketoconazol Ketoconazol Ketoconazolo Kétoconazole Ketoconazole Ketoconazol Ketoconazole FALSE TRUE TRUE FALSE Ketoconazol Ketoconazol Ketoconazol Ketoconazolo Kétoconazole Ketoconazole Ketoconazol Ketokonazol Кетоконазол
Levofloxacin FALSE TRUE TRUE FALSE Levofloxacin Levofloxacine Levofloxacina Levofloxacina Lévofloxacine Levofloxacin Levofloxacin Levofloxacin FALSE TRUE TRUE FALSE Levofloxacin Levofloxacine Levofloxacina Levofloxacina Lévofloxacine Levofloxacin Levofloxacin Levofloxacin Левофлоксацин
Lincomycin FALSE TRUE TRUE FALSE Lincomycin Lincomycine Lincomicina Lincomicina Lincomycine Lincomycin Lincomycin Lincomycin FALSE TRUE TRUE FALSE Lincomycin Lincomycine Lincomicina Lincomicina Lincomycine Lincomycin Lincomycin Lincomycin Линкомицин
Lomefloxacin FALSE TRUE TRUE FALSE Lomefloxacin Lomefloxacine Lomefloxacina Lomefloxacina Loméfloxacine Lomefloxacin Lomefloxacin Lomefloxacin FALSE TRUE TRUE FALSE Lomefloxacin Lomefloxacine Lomefloxacina Lomefloxacina Loméfloxacine Lomefloxacin Lomefloxacin Lomefloxacin Ломефлоксацин
Lysozyme FALSE TRUE TRUE FALSE Lysozym Lysozym Lisozima Lisozima Lysozyme Lysozyme Lysozym Lysozyme FALSE TRUE TRUE FALSE Lysozym Lysozym Lisozima Lisozima Lysozyme Lysozyme Lysozym Lysozym Лизоцим
Mandelic acid FALSE TRUE TRUE FALSE Mandelsäure Amandelzuur Ácido mandélico Acido mandelico Acide mandélique Ácido mandélico Mandelinsyre Mandelic acid FALSE TRUE TRUE FALSE Mandelsäure Amandelzuur Ácido mandélico Acido mandelico Acide mandélique Ácido mandélico Mandelinsyre Mandelsyra Мандаловая кислота
Metampicillin FALSE TRUE TRUE FALSE Metampicillin Metampicilline Metampicilina Metampicillina Métampicilline Metampicilina Metampicillin Metampicillin FALSE TRUE TRUE FALSE Metampicillin Metampicilline Metampicilina Metampicillina Métampicilline Metampicilina Metampicillin Metampicillin Метампициллин
Meticillin FALSE TRUE TRUE FALSE Meticillin Meticilline Meticilina Meticillina Méticilline Meticillin Meticillin Meticillin FALSE TRUE TRUE FALSE Meticillin Meticilline Meticilina Meticillina Méticilline Meticillin Meticillin Meticillin Метициллин
Metisazone FALSE TRUE TRUE FALSE Metisazon Metisazon Metisazona Metisazone Métisazone Metisazone Metisazon Metisazone FALSE TRUE TRUE FALSE Metisazon Metisazon Metisazona Metisazone Métisazone Metisazone Metisazon Metisazon Метисазон
Metronidazole FALSE TRUE TRUE FALSE Metronidazol Metronidazol Metronidazol Metronidazolo Métronidazole Metronidazol Metronidazol Metronidazole FALSE TRUE TRUE FALSE Metronidazol Metronidazol Metronidazol Metronidazolo Métronidazole Metronidazol Metronidazol Metronidazol Метронидазол
Mezlocillin FALSE TRUE TRUE FALSE Mezlocillin Mezlocilline Mezlocilina Mezlocillina Mezlocilline Mezlocillin Mezlocillin Mezlocillin FALSE TRUE TRUE FALSE Mezlocillin Mezlocilline Mezlocilina Mezlocillina Mezlocilline Mezlocillin Mezlocillin Mezlocillin Мезлоциллин
Micafungin FALSE TRUE TRUE FALSE Micafungin Micafungine Micafungina Micafungin Micafungine Micafungin Micafungin Micafungin FALSE TRUE TRUE FALSE Micafungin Micafungine Micafungina Micafungin Micafungine Micafungin Micafungin Micafungin Микафунгин
Miconazole FALSE TRUE TRUE FALSE Miconazol Miconazol Miconazol Miconazolo Miconazole Miconazole Miconazol Miconazole FALSE TRUE TRUE FALSE Miconazol Miconazol Miconazol Miconazolo Miconazole Miconazole Miconazol Miconazol Миконазол
Midecamycin FALSE TRUE TRUE FALSE Midecamycin Midecamycine Midecamicina Midecamicina Midecamycine Midecamycin Midecamycin Midecamycin FALSE TRUE TRUE FALSE Midecamycin Midecamycine Midecamicina Midecamicina Midecamycine Midecamycin Midecamycin Midecamycin Мидекамицин
Miocamycin FALSE TRUE TRUE FALSE Miocamycin Miocamycine Miocamycin Miocamicina Miocamycine Miocamicina Miocamycin Miocamycin FALSE TRUE TRUE FALSE Miocamycin Miocamycine Miocamycin Miocamicina Miocamycine Miocamicina Miocamycin Miocamycin Миокамицин
Moxifloxacin FALSE TRUE TRUE FALSE Moxifloxacin Moxifloxacine Moxifloxacina Moxifloxacin Moxifloxacine Moxifloxacina Moxifloxacin Moxifloxacin FALSE TRUE TRUE FALSE Moxifloxacin Moxifloxacine Moxifloxacina Moxifloxacin Moxifloxacine Moxifloxacina Moxifloxacin Moxifloxacin Моксифлоксацин
Mupirocin FALSE TRUE TRUE FALSE Mupirocin Mupirocine Mupirocina Mupirocina Mupirocine Mupirocina Mupirocin Mupirocin FALSE TRUE TRUE FALSE Mupirocin Mupirocine Mupirocina Mupirocina Mupirocine Mupirocina Mupirocin Mupirocin Мупироцин
Nalidixic acid FALSE TRUE TRUE FALSE Nalidixinsäure Nalidixinezuur Ácido nalidíxico Acido nalidixico Acide nalidixique Ácido nalidíxico Nalidixinsyre Nalidixic acid FALSE TRUE TRUE FALSE Nalidixinsäure Nalidixinezuur Ácido nalidíxico Acido nalidixico Acide nalidixique Ácido nalidíxico Nalidixinsyre Nalidixinsyra Налидиксовая кислота
Neomycin FALSE TRUE TRUE FALSE Neomycin Neomycine Neomicina Neomicina Néomycine Neomicina Neomycin Neomycin FALSE TRUE TRUE FALSE Neomycin Neomycine Neomicina Neomicina Néomycine Neomicina Neomycin Neomycin Неомицин
Netilmicin FALSE TRUE TRUE FALSE Netilmicin Netilmicine Netilmicina Netilmicin Netilmicine Netilmicin Netilmicin Netilmicin FALSE TRUE TRUE FALSE Netilmicin Netilmicine Netilmicina Netilmicin Netilmicine Netilmicin Netilmicin Netilmicin Нетилмицин
Nitrofurantoin FALSE TRUE TRUE FALSE Nitrofurantoin Nitrofurantoine Nitrofurantoína Nitrofurantoina Nitrofurantoïne Nitrofurantoína Nitrofurantoin Nitrofurantoin FALSE TRUE TRUE FALSE Nitrofurantoin Nitrofurantoine Nitrofurantoína Nitrofurantoina Nitrofurantoïne Nitrofurantoína Nitrofurantoin Nitrofurantoin Нитрофурантоин
Norfloxacin FALSE TRUE TRUE FALSE Norfloxacin Norfloxacine Norfloxacina Norfloxacina Norfloxacine Norfloxacin Norfloxacin Norfloxacin FALSE TRUE TRUE FALSE Norfloxacin Norfloxacine Norfloxacina Norfloxacina Norfloxacine Norfloxacin Norfloxacin Norfloxacin Норфлоксацин
Novobiocin FALSE TRUE TRUE FALSE Novobiocin Novobiocine Novobiocina Novobiocin Novobiocine Novobiocin Novobiocin Novobiocin FALSE TRUE TRUE FALSE Novobiocin Novobiocine Novobiocina Novobiocin Novobiocine Novobiocin Novobiocin Novobiocin Новобиоцин
Nystatin FALSE TRUE TRUE FALSE Nystatin Nystatine Nistatina Nystatin Nystatine Nystatin Nystatin Nystatin FALSE TRUE TRUE FALSE Nystatin Nystatine Nistatina Nystatin Nystatine Nystatin Nystatin Nystatin Нистатин
Ofloxacin FALSE TRUE TRUE FALSE Ofloxacin Ofloxacine Ofloxacina Ofloxacin Ofloxacine Ofloxacin Ofloxacin Ofloxacin FALSE TRUE TRUE FALSE Ofloxacin Ofloxacine Ofloxacina Ofloxacin Ofloxacine Ofloxacin Ofloxacin Ofloxacin Офлоксацин
Oleandomycin FALSE TRUE TRUE FALSE Oleandomycin Oleandomycine Oleandomicina Oleandomicina Oleandomycine Oleandomicina Oleandomycin Oleandomycin FALSE TRUE TRUE FALSE Oleandomycin Oleandomycine Oleandomicina Oleandomicina Oleandomycine Oleandomicina Oleandomycin Oleandomycin Олеандомицин
Ornidazole FALSE TRUE TRUE FALSE Ornidazol Ornidazol Ornidazol Ornidazolo Ornidazole Ornidazole Ornidazol Ornidazole FALSE TRUE TRUE FALSE Ornidazol Ornidazol Ornidazol Ornidazolo Ornidazole Ornidazole Ornidazol Ornidazol Орнидазол
Oxacillin FALSE TRUE TRUE FALSE Oxacillin Oxacilline Oxacilina Oxacillina Oxacilline Oxacillin Oxacillin Oxacillin FALSE TRUE TRUE FALSE Oxacillin Oxacilline Oxacilina Oxacillina Oxacilline Oxacillin Oxacillin Oxacillin Оксациллин
Oxolinic acid FALSE TRUE TRUE FALSE Oxolinsäure Oxolinezuur Ácido oxolínico Acido ossolinico Acide oxolinique Ácido oxolínico Oxolinsyre Oxolinic acid FALSE TRUE TRUE FALSE Oxolinsäure Oxolinezuur Ácido oxolínico Acido ossolinico Acide oxolinique Ácido oxolínico Oxolinsyre Oxolinsyra Оксолиновая кислота
Oxytetracycline FALSE TRUE TRUE FALSE Oxytetracyclin Oxytetracycline Oxitetraciclina Ossitetraciclina Oxytétracycline Oxitetraciclina Oxytetracyclin Oxytetracycline FALSE TRUE TRUE FALSE Oxytetracyclin Oxytetracycline Oxitetraciclina Ossitetraciclina Oxytétracycline Oxitetraciclina Oxytetracyclin Oxytetracyklin Окситетрациклин
Pazufloxacin FALSE TRUE TRUE FALSE Pazufloxacin Pazufloxacine Pazufloxacina Pazufloxacin Pazufloxacine Pazufloxacin Pazufloxacin Pazufloxacin FALSE TRUE TRUE FALSE Pazufloxacin Pazufloxacine Pazufloxacina Pazufloxacin Pazufloxacine Pazufloxacin Pazufloxacin Pazufloxacin Пазуфлоксацин
Pefloxacin FALSE TRUE TRUE FALSE Pefloxacin Pefloxacine Pefloxacina Pefloxacina Péfloxacine Pefloxacin Pefloxacin Pefloxacin FALSE TRUE TRUE FALSE Pefloxacin Pefloxacine Pefloxacina Pefloxacina Péfloxacine Pefloxacin Pefloxacin Pefloxacin Пефлоксацин
Penamecillin FALSE TRUE TRUE FALSE Penamecillin Penamecilline Penamecilina Penamecillina Pénamécilline Penamecilina Penamecillin Penamecillin FALSE TRUE TRUE FALSE Penamecillin Penamecilline Penamecilina Penamecillina Pénamécilline Penamecilina Penamecillin Penamecillin Пенамециллин
Penicillin FALSE TRUE TRUE FALSE Penicillin Penicilline Penicilina Penicillina Pénicilline Penicilina Penicillin Penicillin FALSE TRUE TRUE FALSE Penicillin Penicilline Penicilina Penicillina Pénicilline Penicilina Penicillin Penicillin Пенициллин
Pheneticillin FALSE TRUE TRUE FALSE Pheneticillin Feneticilline Feneticilina Feneticillina Phénéticilline Pheneticillin Pheneticillin Pheneticillin FALSE TRUE TRUE FALSE Pheneticillin Feneticilline Feneticilina Feneticillina Phénéticilline Pheneticillin Pheneticillin Feneticillin Фенетициллин
Phenoxymethylpenicillin FALSE TRUE TRUE FALSE Phenoxymethylpenicillin Fenoxymethylpenicilline Fenoximetilpenicilina Fenossimetilpenicillina Phénoxyméthylpénicilline Fenoximetilpenicilina Phenoxymethylpenicillin Phenoxymethylpenicillin FALSE TRUE TRUE FALSE Phenoxymethylpenicillin Fenoxymethylpenicilline Fenoximetilpenicilina Fenossimetilpenicillina Phénoxyméthylpénicilline Fenoximetilpenicilina Phenoxymethylpenicillin Fenoximetylpenicillin Феноксиметилпенициллин
Pipemidic acid FALSE TRUE TRUE FALSE Pipemidinsäure Pipemidinezuur Ácido pipemídico Acido pipemidico Acide pipémidique Ácido pipemídico Pipemidinsyre Pipemidic acid FALSE TRUE TRUE FALSE Pipemidinsäure Pipemidinezuur Ácido pipemídico Acido pipemidico Acide pipémidique Ácido pipemídico Pipemidinsyre Pipemidinsyra Пипемидовая кислота
Piperacillin FALSE TRUE TRUE FALSE Piperacillin Piperacilline Piperacilina Piperacillina Pipéracilline Piperacilina Piperacillin Piperacillin FALSE TRUE TRUE FALSE Piperacillin Piperacilline Piperacilina Piperacillina Pipéracilline Piperacilina Piperacillin Piperacillin Пиперациллин
Piperacillin/beta-lactamase inhibitor FALSE TRUE TRUE FALSE Piperacillin/Beta-Lactamase-Hemmer Piperacilline/enzymremmer Piperacilina/inhib. de la beta-lactamasa Piperacillina/inib. d. beta-lattamasi Pipéracilline/inhib. de bêta-lactamase Piperacilina/inibid. da beta-lactamase Piperacillin/beta-lactamasehæmmer Piperacillin/beta-lactamase inhibitor FALSE TRUE TRUE FALSE Piperacillin/Beta-Lactamase-Hemmer Piperacilline/enzymremmer Piperacilina/inhib. de la beta-lactamasa Piperacillina/inib. d. beta-lattamasi Pipéracilline/inhib. de bêta-lactamase Piperacilina/inibid. da beta-lactamase Piperacillin/beta-lactamasehæmmer Piperacillin/betalaktamashämmare Пиперациллин/ингибитор бета-лактамазы
Piromidic acid FALSE TRUE TRUE FALSE Piromidinsäure Piromidinezuur Ácido piromídico Acido piromidico Acide piromidique Ácido piromídico Piromidinsyre Piromidic acid FALSE TRUE TRUE FALSE Piromidinsäure Piromidinezuur Ácido piromídico Acido piromidico Acide piromidique Ácido piromídico Piromidinsyre Piromidinsyra Пиромидовая кислота
Pivampicillin FALSE TRUE TRUE FALSE Pivampicillin Pivampicilline Pivampicilina Pivampicillina Pivampicilline Pivampicilina Pivampicillin Pivampicillin FALSE TRUE TRUE FALSE Pivampicillin Pivampicilline Pivampicilina Pivampicillina Pivampicilline Pivampicilina Pivampicillin Pivampicillin Пивампициллин
Polymyxin B FALSE TRUE TRUE FALSE Polymyxin B Polymyxine B Polimixina B Polimixina B Polymyxine B Polimixina B Polymyxin B Polymyxin B FALSE TRUE TRUE FALSE Polymyxin B Polymyxine B Polimixina B Polimixina B Polymyxine B Polimixina B Polymyxin B Polymyxin B Полимиксин В
Posaconazole FALSE TRUE TRUE FALSE Posaconazol Posaconazol Posaconazol Posaconazolo Posaconazole Posaconazole Posaconazol Posaconazole FALSE TRUE TRUE FALSE Posaconazol Posaconazol Posaconazol Posaconazolo Posaconazole Posaconazole Posaconazol Posakonazol Посаконазол
Pristinamycin FALSE TRUE TRUE FALSE Pristinamycin Pristinamycine Pristinamicina Pristinamicina Pristinamycine Pristinamicina Pristinamycin Pristinamycin FALSE TRUE TRUE FALSE Pristinamycin Pristinamycine Pristinamicina Pristinamicina Pristinamycine Pristinamicina Pristinamycin Pristinamycin Пристинамицин
Procaine benzylpenicillin FALSE TRUE TRUE FALSE Procain-Benzylpenicillin Benzylpenicillineprocaine Bencilpenicilina procaína Procaina benzilpenicillina Procaïne benzylpénicilline Procaína benzilpenicilina Prokainbenzylpenicillin Procaine benzylpenicillin FALSE TRUE TRUE FALSE Procain-Benzylpenicillin Benzylpenicillineprocaine Bencilpenicilina procaína Procaina benzilpenicillina Procaïne benzylpénicilline Procaína benzilpenicilina Prokainbenzylpenicillin Prokainbenzylpenicillin Прокаин бензилпенициллин
Propicillin FALSE TRUE TRUE FALSE Propicillin Propicilline Propicilina Propicillina Propicilline Propicilina Propicillin Propicillin FALSE TRUE TRUE FALSE Propicillin Propicilline Propicilina Propicillina Propicilline Propicilina Propicillin Propicillin Пропициллин
Prulifloxacin FALSE TRUE TRUE FALSE Prulifloxacin Prulifloxacine Prulifloxacina Prulifloxacina Prulifloxacine Prulifloxacina Prulifloxacin Prulifloxacin FALSE TRUE TRUE FALSE Prulifloxacin Prulifloxacine Prulifloxacina Prulifloxacina Prulifloxacine Prulifloxacina Prulifloxacin Prulifloxacin Прулифлоксацин
Quinupristin/dalfopristin FALSE TRUE TRUE FALSE Quinupristin/Dalfopristin Quinupristine/dalfopristine Quinupristina/dalfopristina Quinupristina/dalfopristina Quinupristine/dalfopristine Quinupristin/dalfopristin Quinupristin/dalfopristin Quinupristin/dalfopristin FALSE TRUE TRUE FALSE Quinupristin/Dalfopristin Quinupristine/dalfopristine Quinupristina/dalfopristina Quinupristina/dalfopristina Quinupristine/dalfopristine Quinupristin/dalfopristin Quinupristin/dalfopristin Quinupristin/dalfopristin Квинупристин/дальфопристин
Ribostamycin FALSE TRUE TRUE FALSE Ribostamycin Ribostamycine Ribostamicina Ribostamicina Ribostamycine Ribostamicina Ribostamycin Ribostamycin FALSE TRUE TRUE FALSE Ribostamycin Ribostamycine Ribostamicina Ribostamicina Ribostamycine Ribostamicina Ribostamycin Ribostamycin Рибостамицин
Rifabutin FALSE TRUE TRUE FALSE Rifabutin Rifabutine Rifabutina Rifabutina Rifabutine Rifabutin Rifabutin Rifabutin FALSE TRUE TRUE FALSE Rifabutin Rifabutine Rifabutina Rifabutina Rifabutine Rifabutin Rifabutin Rifabutin Рифабутин
Rifampicin FALSE TRUE TRUE FALSE Rifampicin Rifampicine Rifampicina Rifampicina Rifampicine Rifampicina Rifampicin Rifampicin FALSE TRUE TRUE FALSE Rifampicin Rifampicine Rifampicina Rifampicina Rifampicine Rifampicina Rifampicin Rifampicin Рифампицин
Rifampicin/pyrazinamide/ethambutol/isoniazid FALSE TRUE TRUE FALSE Rifampicin/Pyrazinamid/Ethambutol/Isoniazid Rifampicine/pyrazinamide/ethambutol/isoniazide Rifampicina/pirazinamida/etambutol/isoniazida Rifampicina/pirazinamide/etambutolo/isoniazide Rifampicine/pyrazinamide/éthambutol/isoniazide Rifampicina/pirazinamida/etambutol/isoniazida Rifampicin/pyrazinamid/ethambutol/isoniazid Rifampicin/pyrazinamide/ethambutol/isoniazid FALSE TRUE TRUE FALSE Rifampicin/Pyrazinamid/Ethambutol/Isoniazid Rifampicine/pyrazinamide/ethambutol/isoniazide Rifampicina/pirazinamida/etambutol/isoniazida Rifampicina/pirazinamide/etambutolo/isoniazide Rifampicine/pyrazinamide/éthambutol/isoniazide Rifampicina/pirazinamida/etambutol/isoniazida Rifampicin/pyrazinamid/ethambutol/isoniazid Rifampicin/pyrazinamid/ethambutol/isoniazid Рифампицин/пиразинамид/этамбутол/исониазид
Rifampicin/pyrazinamide/isoniazid FALSE TRUE TRUE FALSE Rifampicin/Pyrazinamid/Isoniazid Rifampicine/pyrazinamide/isoniazide Rifampicina/pirazinamida/isoniazida Rifampicina/pirazinamide/isoniazide Rifampicine/pyrazinamide/isoniazide Rifampicina/pirazinamida/isoniazida Rifampicin/pyrazinamid/isoniazid Rifampicin/pyrazinamide/isoniazid FALSE TRUE TRUE FALSE Rifampicin/Pyrazinamid/Isoniazid Rifampicine/pyrazinamide/isoniazide Rifampicina/pirazinamida/isoniazida Rifampicina/pirazinamide/isoniazide Rifampicine/pyrazinamide/isoniazide Rifampicina/pirazinamida/isoniazida Rifampicin/pyrazinamid/isoniazid Rifampicin/pyrazinamid/isoniazid Рифампицин/пиразинамид/изониазид
Rifampicin/isoniazid FALSE TRUE TRUE FALSE Rifampicin/Isoniazid Rifampicine/isoniazide Rifampicina/isoniazida Rifampicina/isoniazide Rifampicine/isoniazide Rifampicina/isoniazida Rifampicin/isoniazid Rifampicin/isoniazid FALSE TRUE TRUE FALSE Rifampicin/Isoniazid Rifampicine/isoniazide Rifampicina/isoniazida Rifampicina/isoniazide Rifampicine/isoniazide Rifampicina/isoniazida Rifampicin/isoniazid Rifampicin/isoniazid Рифампицин/изониазид
Rifamycin FALSE TRUE TRUE FALSE Rifamycin Rifamycine Rifamicina Rifamicina Rifamycine Rifamycin Rifamycin Rifamycin FALSE TRUE TRUE FALSE Rifamycin Rifamycine Rifamicina Rifamicina Rifamycine Rifamycin Rifamycin Rifamycin Рифамицин
Rifaximin FALSE TRUE TRUE FALSE Rifaximin Rifaximine Rifaximina Rifaximina Rifaximine Rifaximin Rifaximin Rifaximin FALSE TRUE TRUE FALSE Rifaximin Rifaximine Rifaximina Rifaximina Rifaximine Rifaximin Rifaximin Rifaximin Рифаксимин
Rokitamycin FALSE TRUE TRUE FALSE Rokitamycin Rokitamycine Rokitamicina Rokitamicina Rokitamycine Rokitamycin Rokitamycin Rokitamycin FALSE TRUE TRUE FALSE Rokitamycin Rokitamycine Rokitamicina Rokitamicina Rokitamycine Rokitamycin Rokitamycin Rokitamycin Рокитамицин
Rosoxacin FALSE TRUE TRUE FALSE Rosoxacin Rosoxacine Rosoxacina Rosoxacina Rosoxacine Rosoxacina Rosoxacin Rosoxacin FALSE TRUE TRUE FALSE Rosoxacin Rosoxacine Rosoxacina Rosoxacina Rosoxacine Rosoxacina Rosoxacin Rosoxacin Розоксацин
Roxithromycin FALSE TRUE TRUE FALSE Roxithromycin Roxitromycine Roxitromicina Roxitromicina Roxithromycine Roxitromicina Roxithromycin Roxithromycin FALSE TRUE TRUE FALSE Roxithromycin Roxitromycine Roxitromicina Roxitromicina Roxithromycine Roxitromicina Roxithromycin Roxitromycin Рокситромицин
Rufloxacin FALSE TRUE TRUE FALSE Rufloxacin Rufloxacine Rufloxacina Rufloxacina Rufloxacine Rufloxacin Rufloxacin Rufloxacin FALSE TRUE TRUE FALSE Rufloxacin Rufloxacine Rufloxacina Rufloxacina Rufloxacine Rufloxacin Rufloxacin Rufloxacin Руфлоксацин
Sisomicin FALSE TRUE TRUE FALSE Sisomicin Sisomicine Sisomicina Sisomicina Sisomicine Sisomicina Sisomicin Sisomicin FALSE TRUE TRUE FALSE Sisomicin Sisomicine Sisomicina Sisomicina Sisomicine Sisomicina Sisomicin Sisomicin Сизомицин
Sodium aminosalicylate FALSE TRUE TRUE FALSE Natrium-Aminosalicylat Aminosalicylzuur Aminosalicilato de sodio Sodio aminosalicilato Aminosalicylate de sodium Aminosalicilato de sódio Natriumaminosalicylat Sodium aminosalicylate FALSE TRUE TRUE FALSE Natrium-Aminosalicylat Aminosalicylzuur Aminosalicilato de sodio Sodio aminosalicilato Aminosalicylate de sodium Aminosalicilato de sódio Natriumaminosalicylat Natriumaminosalicylat Аминосалицилат натрия
Sparfloxacin FALSE TRUE TRUE FALSE Sparfloxacin Sparfloxacine Esparfloxacina Sparfloxacina Sparfloxacine Sparfloxacin Sparfloxacin Sparfloxacin FALSE TRUE TRUE FALSE Sparfloxacin Sparfloxacine Esparfloxacina Sparfloxacina Sparfloxacine Sparfloxacin Sparfloxacin Sparfloxacin Спарфлоксацин
Spectinomycin FALSE TRUE TRUE FALSE Spectinomycin Spectinomycine Espectinomicina Spectinomycin Spectinomycine Spectinomycin Spectinomycin Spectinomycin FALSE TRUE TRUE FALSE Spectinomycin Spectinomycine Espectinomicina Spectinomycin Spectinomycine Spectinomycin Spectinomycin Spektinomycin Спектиномицин
Spiramycin FALSE TRUE TRUE FALSE Spiramycin Spiramycine Espiramicina Spiramicina Spiramycine Spiramycin Spiramycin Spiramycin FALSE TRUE TRUE FALSE Spiramycin Spiramycine Espiramicina Spiramicina Spiramycine Spiramycin Spiramycin Spiramycin Спирамицин
Spiramycin/metronidazole FALSE TRUE TRUE FALSE Spiramycin/Metronidazol Spiramycine/metronidazol Espiramicina/metronidazol Spiramicina/metronidazolo Spiramycine/métronidazole Spiramycin/metronidazol Spiramycin/metronidazol Spiramycin/metronidazole FALSE TRUE TRUE FALSE Spiramycin/Metronidazol Spiramycine/metronidazol Espiramicina/metronidazol Spiramicina/metronidazolo Spiramycine/métronidazole Spiramycin/metronidazol Spiramycin/metronidazol Spiramycin/metronidazol Спирамицин/метронидазол
Staphylococcus immunoglobulin FALSE TRUE TRUE FALSE Staphylococcus-Immunoglobulin Stafylokokkenimmunoglobuline Inmunoglobulina estafilocócica Immunoglobulina per stafilococco Immunoglobuline staphylococcique Imunoglobulina de Staphylococcus Stafylokok-immunglobulin Staphylococcus immunoglobulin FALSE TRUE TRUE FALSE Staphylococcus-Immunoglobulin Stafylokokkenimmunoglobuline Inmunoglobulina estafilocócica Immunoglobulina per stafilococco Immunoglobuline staphylococcique Imunoglobulina de Staphylococcus Stafylokok-immunglobulin Immunoglobulin mot stafylokocker Стафилококковый иммуноглобулин
Streptoduocin FALSE TRUE TRUE FALSE Streptoduocin Streptoduocine Estreptoduocina Streptoduocin Streptoduocine Estreptoduocina Streptoduocin Streptoduocin FALSE TRUE TRUE FALSE Streptoduocin Streptoduocine Estreptoduocina Streptoduocin Streptoduocine Estreptoduocina Streptoduocin Streptoduocin Стрептодуоцин
Streptomycin FALSE TRUE TRUE FALSE Streptomycin Streptomycine Estreptomicina Streptomicina Streptomycine Streptomycin Streptomycin Streptomycin FALSE TRUE TRUE FALSE Streptomycin Streptomycine Estreptomicina Streptomicina Streptomycine Streptomycin Streptomycin Streptomycin Стрептомицин
Streptomycin/isoniazid FALSE TRUE TRUE FALSE Streptomycin/Isoniazid Streptomycine/isoniazide Estreptomicina/isoniazida Streptomicina/isoniazide Streptomycine/isoniazide Streptomicina/isoniazida Streptomycin/isoniazid Streptomycin/isoniazid FALSE TRUE TRUE FALSE Streptomycin/Isoniazid Streptomycine/isoniazide Estreptomicina/isoniazida Streptomicina/isoniazide Streptomycine/isoniazide Streptomicina/isoniazida Streptomycin/isoniazid Streptomycin/isoniazid Стрептомицин/изониазид
Sulbenicillin FALSE TRUE TRUE FALSE Sulbenicillin Sulbenicilline Sulbenicilina Sulbenicillina Sulbenicilline Sulbenicilina Sulbenicillin Sulbenicillin FALSE TRUE TRUE FALSE Sulbenicillin Sulbenicilline Sulbenicilina Sulbenicillina Sulbenicilline Sulbenicilina Sulbenicillin Sulbenicillin Сульбенициллин
Sulfadiazine/tetroxoprim FALSE TRUE TRUE FALSE Sulfadiazin/Tetroxoprim Sulfadiazine/tetroxoprim Sulfadiazina/tetroxoprim Sulfadiazina/tetroxoprim Sulfadiazine/tetroxoprime Sulfadiazina/tetroxoprim Sulfadiazin/tetroxoprim Sulfadiazine/tetroxoprim FALSE TRUE TRUE FALSE Sulfadiazin/Tetroxoprim Sulfadiazine/tetroxoprim Sulfadiazina/tetroxoprim Sulfadiazina/tetroxoprim Sulfadiazine/tetroxoprime Sulfadiazina/tetroxoprim Sulfadiazin/tetroxoprim Sulfadiazin/tetroxoprim Сульфадиазин/тетроксоприм
Sulfadiazine/trimethoprim FALSE TRUE TRUE FALSE Sulfadiazin/Trimethoprim Sulfadiazine/trimethoprim Sulfadiazina/trimetoprima Sulfadiazina/trimetoprim Sulfadiazine/triméthoprime Sulfadiazina/trimethoprim Sulfadiazin/trimethoprim Sulfadiazine/trimethoprim FALSE TRUE TRUE FALSE Sulfadiazin/Trimethoprim Sulfadiazine/trimethoprim Sulfadiazina/trimetoprima Sulfadiazina/trimetoprim Sulfadiazine/triméthoprime Sulfadiazina/trimethoprim Sulfadiazin/trimethoprim Sulfadiazin/trimetoprim Сульфадиазин/триметоприм
Sulfadimidine/trimethoprim FALSE TRUE TRUE FALSE Sulfadimidin/Trimethoprim Sulfadimidine/trimethoprim Sulfadimidina/trimetoprima Sulfadimidina/trimetoprim Sulfadimidine/triméthoprime Sulfadimidina/trimethoprim Sulfadimidin/trimethoprim Sulfadimidine/trimethoprim FALSE TRUE TRUE FALSE Sulfadimidin/Trimethoprim Sulfadimidine/trimethoprim Sulfadimidina/trimetoprima Sulfadimidina/trimetoprim Sulfadimidine/triméthoprime Sulfadimidina/trimethoprim Sulfadimidin/trimethoprim Sulfadimidin/trimetoprim Сульфадимидин/триметоприм
Sulfafurazole FALSE TRUE TRUE FALSE Sulfafurazol Sulfafurazol Sulfafurazol Sulfafurazolo Sulfafurazole Sulfafurazole Sulfafurazol Sulfafurazole FALSE TRUE TRUE FALSE Sulfafurazol Sulfafurazol Sulfafurazol Sulfafurazolo Sulfafurazole Sulfafurazole Sulfafurazol Sulfafurazol Сульфафуразол
Sulfaisodimidine FALSE TRUE TRUE FALSE Sulfaisodimidin Sulfisomidine Sulfaisodimidina Sulfaisodimidina Sulfaisodimidine Sulfaisodimidina Sulfaisodimidin Sulfaisodimidine FALSE TRUE TRUE FALSE Sulfaisodimidin Sulfisomidine Sulfaisodimidina Sulfaisodimidina Sulfaisodimidine Sulfaisodimidina Sulfaisodimidin Sulfaisodimidin Сульфаизодимидин
Sulfalene FALSE TRUE TRUE FALSE Sulfalene Sulfaleen Sulfaleno Sulfalene Sulfalène Sulfaleno Sulfalen Sulfalene FALSE TRUE TRUE FALSE Sulfalene Sulfaleen Sulfaleno Sulfalene Sulfalène Sulfaleno Sulfalen Sulfen Сульфален
Sulfamazone FALSE TRUE TRUE FALSE Sulfamazon Sulfamazon Sulfamazona Sulfamazone Sulfamazone Sulfamazona Sulfamazon Sulfamazone FALSE TRUE TRUE FALSE Sulfamazon Sulfamazon Sulfamazona Sulfamazone Sulfamazone Sulfamazona Sulfamazon Sulfamazon Сульфамазон
Sulfamerazine/trimethoprim FALSE TRUE TRUE FALSE Sulfamerazin/Trimethoprim Sulfamerazine/trimethoprim Sulfamerazina/trimetoprima Sulfamerazina/trimetoprim Sulfamérazine/triméthoprime Sulfamerazina/trimethoprim Sulfamerazin/trimethoprim Sulfamerazine/trimethoprim FALSE TRUE TRUE FALSE Sulfamerazin/Trimethoprim Sulfamerazine/trimethoprim Sulfamerazina/trimetoprima Sulfamerazina/trimetoprim Sulfamérazine/triméthoprime Sulfamerazina/trimethoprim Sulfamerazin/trimethoprim Sulfamerazin/trimetoprim Сульфамеразин/триметоприм
Sulfamethizole FALSE TRUE TRUE FALSE Sulfamethizol Sulfamethizol Sulfametozol Sulfamethizolo Sulfaméthizole Sulfametizole Sulfamethizol Sulfamethizole FALSE TRUE TRUE FALSE Sulfamethizol Sulfamethizol Sulfametozol Sulfamethizolo Sulfaméthizole Sulfametizole Sulfamethizol Sulfamethizol Сульфаметизол
Sulfamethoxazole FALSE TRUE TRUE FALSE Sulfamethoxazol Sulfamethoxazol Sulfametoxazol Sulfametossazolo Sulfaméthoxazole Sulfamethoxazole Sulfamethoxazol Sulfamethoxazole FALSE TRUE TRUE FALSE Sulfamethoxazol Sulfamethoxazol Sulfametoxazol Sulfametossazolo Sulfaméthoxazole Sulfamethoxazole Sulfamethoxazol Sulfametoxazol Сульфаметоксазол
Sulfamethoxazole/trimethoprim FALSE TRUE TRUE FALSE Sulfamethoxazol/Trimethoprim Sulfamethoxazol/trimethoprim Sulfametoxazol/trimetoprima Sulfametossazolo/trimetoprim Sulfaméthoxazole/triméthoprime Sulfametoxazol/trimethoprim Sulfamethoxazol/trimethoprim Sulfamethoxazole/trimethoprim FALSE TRUE TRUE FALSE Sulfamethoxazol/Trimethoprim Sulfamethoxazol/trimethoprim Sulfametoxazol/trimetoprima Sulfametossazolo/trimetoprim Sulfaméthoxazole/triméthoprime Sulfametoxazol/trimethoprim Sulfamethoxazol/trimethoprim Sulfametoxazol/trimetoprim Сульфаметоксазол/триметоприм
Sulfametoxydiazine FALSE TRUE TRUE FALSE Sulfametoxydiazin Sulfamethoxydiazine Sulfametoxidiazina Sulfametoxydiazine Sulfamétoxydiazine Sulfametoxidiazina Sulfametoxydiazin Sulfametoxydiazine FALSE TRUE TRUE FALSE Sulfametoxydiazin Sulfamethoxydiazine Sulfametoxidiazina Sulfametoxydiazine Sulfamétoxydiazine Sulfametoxidiazina Sulfametoxydiazin Sulfametoxydiazin Сульфаметоксидиазин
Sulfametrole/trimethoprim FALSE TRUE TRUE FALSE Sulfametrole/Trimethoprim Sulfametrol/trimethoprim Sulfametrol/trimetoprima Sulfametrole/trimetoprim Sulfamétrole/triméthoprime Sulfametrole/trimethoprim Sulfametrol/trimethoprim Sulfametrole/trimethoprim FALSE TRUE TRUE FALSE Sulfametrole/Trimethoprim Sulfametrol/trimethoprim Sulfametrol/trimetoprima Sulfametrole/trimetoprim Sulfamétrole/triméthoprime Sulfametrole/trimethoprim Sulfametrol/trimethoprim Sulfametrol/trimetoprim Сульфаметрол/триметоприм
Sulfamoxole FALSE TRUE TRUE FALSE Sulfamoxol Sulfamoxol Sulfamoxole Sulfamoxolo Sulfamoxole Sulfamoxole Sulfamoxol Sulfamoxole FALSE TRUE TRUE FALSE Sulfamoxol Sulfamoxol Sulfamoxole Sulfamoxolo Sulfamoxole Sulfamoxole Sulfamoxol Sulfamoxol Сульфамоксол
Sulfamoxole/trimethoprim FALSE TRUE TRUE FALSE Sulfamoxol/Trimethoprim Sulfamoxol/trimethoprim Sulfamoxol/trimetoprima Sulfamoxolo/trimetoprim Sulfamoxole/triméthoprime Sulfamoxole/trimethoprim Sulfamoxol/trimethoprim Sulfamoxole/trimethoprim FALSE TRUE TRUE FALSE Sulfamoxol/Trimethoprim Sulfamoxol/trimethoprim Sulfamoxol/trimetoprima Sulfamoxolo/trimetoprim Sulfamoxole/triméthoprime Sulfamoxole/trimethoprim Sulfamoxol/trimethoprim Sulfamoxol/trimetoprim Сульфамоксол/триметоприм
Sulfaperin FALSE TRUE TRUE FALSE Sulfaperin Sulfaperine Sulfametoxazol Sulfaperin Sulfapérine Sulfaperin Sulfaperin Sulfaperin FALSE TRUE TRUE FALSE Sulfaperin Sulfaperine Sulfametoxazol Sulfaperin Sulfapérine Sulfaperin Sulfaperin Sulfaperin Сульфаперин
Sulfaphenazole FALSE TRUE TRUE FALSE Sulfaphenazol Sulfafenazol Sulfafenazol Sulfafenazolo Sulfaphénazole Sulfafenazol Sulfaphenazol Sulfaphenazole FALSE TRUE TRUE FALSE Sulfaphenazol Sulfafenazol Sulfafenazol Sulfafenazolo Sulfaphénazole Sulfafenazol Sulfaphenazol Sulfafenazol Сульфафеназол
Sulfathiazole FALSE TRUE TRUE FALSE Sulfathiazol Sulfathiazol Sulfatiazol Sulfathiazole Sulfathiazole Sulfatazol Sulfathiazol Sulfathiazole FALSE TRUE TRUE FALSE Sulfathiazol Sulfathiazol Sulfatiazol Sulfathiazole Sulfathiazole Sulfatazol Sulfathiazol Sulfathiazol Сульфатиазол
Sulfathiourea FALSE TRUE TRUE FALSE Sulfathioharnstoff Sulfathioureum Sulfathiourea Sulfathiourea Sulfathiourée Sulfathiourea Sulfathiourea Sulfathiourea FALSE TRUE TRUE FALSE Sulfathioharnstoff Sulfathioureum Sulfathiourea Sulfathiourea Sulfathiourée Sulfathiourea Sulfathiourea Sulfatiourea Сульфатиомочевина
Sultamicillin FALSE TRUE TRUE FALSE Sultamicillin Sultamicilline Sultamicilina Sultamicillina Sultamicilline Sultamicillin Sultamicillin Sultamicillin FALSE TRUE TRUE FALSE Sultamicillin Sultamicilline Sultamicilina Sultamicillina Sultamicilline Sultamicillin Sultamicillin Sultamicillin Сультамициллин
Talampicillin FALSE TRUE TRUE FALSE Talampicillin Talampicilline Talampicilina Talampicillina Talampicilline Talampicilina Talampicillin Talampicillin FALSE TRUE TRUE FALSE Talampicillin Talampicilline Talampicilina Talampicillina Talampicilline Talampicilina Talampicillin Talampicillin Талампициллин
Teicoplanin FALSE TRUE TRUE FALSE Teicoplanin Teicoplanine Teicoplanina Teicoplanina Teicoplanine Teicoplanin Teicoplanin Teicoplanin FALSE TRUE TRUE FALSE Teicoplanin Teicoplanine Teicoplanina Teicoplanina Teicoplanine Teicoplanin Teicoplanin Teicoplanin Тейкопланин
Telithromycin FALSE TRUE TRUE FALSE Telithromycin Telitromycine Telitromicina Telitromicina Télithromycine Telitromicina Telithromycin Telithromycin FALSE TRUE TRUE FALSE Telithromycin Telitromycine Telitromicina Telitromicina Télithromycine Telitromicina Telithromycin Telitromycin Телитромицин
Temafloxacin FALSE TRUE TRUE FALSE Temafloxacin Temafloxacine Temafloxacina Temafloxacina Temafloxacine Temafloxacin Temafloxacin Temafloxacin FALSE TRUE TRUE FALSE Temafloxacin Temafloxacine Temafloxacina Temafloxacina Temafloxacine Temafloxacin Temafloxacin Temafloxacin Темафлоксацин
Temocillin FALSE TRUE TRUE FALSE Temocillin Temocilline Temocilina Temocillina Temocillin Temocillin Temocillin Temocillin FALSE TRUE TRUE FALSE Temocillin Temocilline Temocilina Temocillina Temocillin Temocillin Temocillin Temocillin Темоциллин
Tenofovir disoproxil FALSE TRUE TRUE FALSE Tenofovir Disoproxil Tenofovir Tenofovir disoproxil Tenofovir disoproxil Tenofovir disoproxil Tenofovir disoproxil Tenofovir disoproxil Tenofovir disoproxil FALSE TRUE TRUE FALSE Tenofovir Disoproxil Tenofovir Tenofovir disoproxil Tenofovir disoproxil Tenofovir disoproxil Tenofovir disoproxil Tenofovir disoproxil Tenofovir disoproxil Тенофовир дизопроксил
Terizidone FALSE TRUE TRUE FALSE Terizidon Terizidon Terizidona Terizidone Terizidone Terizidone Terizidon Terizidone FALSE TRUE TRUE FALSE Terizidon Terizidon Terizidona Terizidone Terizidone Terizidone Terizidon Terizidon Теризидон
Thiamphenicol FALSE TRUE TRUE FALSE Thiamphenicol Thiamfenicol Tiamfenicol Tiamfenicolo Thiamphénicol Tiamfenicol Thiamphenicol Thiamphenicol FALSE TRUE TRUE FALSE Thiamphenicol Thiamfenicol Tiamfenicol Tiamfenicolo Thiamphénicol Tiamfenicol Thiamphenicol Tiamfenikol Тиамфеникол
Thioacetazone/isoniazid FALSE TRUE TRUE FALSE Thioacetazon/Isoniazid Thioacetazon/isoniazide Tioacetazona/isoniazida Tioacetazone/isoniazide Thioacétazone/isoniazide Thioacetazone/isoniazid Thioacetazon/isoniazid Thioacetazone/isoniazid FALSE TRUE TRUE FALSE Thioacetazon/Isoniazid Thioacetazon/isoniazide Tioacetazona/isoniazida Tioacetazone/isoniazide Thioacétazone/isoniazide Thioacetazone/isoniazid Thioacetazon/isoniazid Thioacetazon/isoniazid Тиоацетазон/изониазид
Ticarcillin FALSE TRUE TRUE FALSE Ticarcillin Ticarcilline Ticarcilina Ticarcillina Ticarcilline Ticarcilina Ticarcillin Ticarcillin FALSE TRUE TRUE FALSE Ticarcillin Ticarcilline Ticarcilina Ticarcillina Ticarcilline Ticarcilina Ticarcillin Ticarcillin Тикарциллин
Ticarcillin/beta-lactamase inhibitor FALSE TRUE TRUE FALSE Ticarcillin/Beta-Lactamase-Hemmer Ticarcilline/enzymremmer Ticarcilina/inhib. de la betalactamasa Ticarcillina/inib. d. beta-lattamasi Ticarcilline/inhib. de bêta-lactamase Ticarcilina/inibid. da beta-lactamase Ticarcillin/beta-lactamasehæmmer Ticarcillin/beta-lactamase inhibitor FALSE TRUE TRUE FALSE Ticarcillin/Beta-Lactamase-Hemmer Ticarcilline/enzymremmer Ticarcilina/inhib. de la betalactamasa Ticarcillina/inib. d. beta-lattamasi Ticarcilline/inhib. de bêta-lactamase Ticarcilina/inibid. da beta-lactamase Ticarcillin/beta-lactamasehæmmer Ticarcillin/beta-laktamashämmare Тикарциллин/ингибитор бета-лактамазы
Ticarcillin/clavulanic acid FALSE TRUE TRUE FALSE Ticarcillin/Clavulansäure Ticarcilline/clavulaanzuur Ticarcilina/ácido clavulánico Ticarcillina/acido clavulanico Ticarcilline/acide clavulanique Ticarcilina/ácido clavulanico Ticarcillin/clavulansyre Ticarcillin/clavulanic acid FALSE TRUE TRUE FALSE Ticarcillin/Clavulansäure Ticarcilline/clavulaanzuur Ticarcilina/ácido clavulánico Ticarcillina/acido clavulanico Ticarcilline/acide clavulanique Ticarcilina/ácido clavulanico Ticarcillin/clavulansyre Ticarcillin/clavulansyra Тикарциллин/клавулановая кислота
Tinidazole FALSE TRUE TRUE FALSE Tinidazol Tinidazol Tinidazol Tinidazolo Tinidazole Tinidazole Tinidazol Tinidazole FALSE TRUE TRUE FALSE Tinidazol Tinidazol Tinidazol Tinidazolo Tinidazole Tinidazole Tinidazol Tinidazol Тинидазол
Tobramycin FALSE TRUE TRUE FALSE Tobramycin Tobramycine Tobramicina Tobramicina Tobramycine Tobramycin Tobramycin Tobramycin FALSE TRUE TRUE FALSE Tobramycin Tobramycine Tobramicina Tobramicina Tobramycine Tobramycin Tobramycin Tobramycin Тобрамицин
Trimethoprim/sulfamethoxazole FALSE TRUE TRUE FALSE Trimethoprim/Sulfamethoxazol Cotrimoxazol Trimetoprima/sulfametoxazol Trimetoprim/sulfametossazolo Triméthoprime/sulfaméthoxazole Trimethoprim/sulfametoxazol Trimethoprim/sulfamethoxazol Trimethoprim/sulfamethoxazole FALSE TRUE TRUE FALSE Trimethoprim/Sulfamethoxazol Cotrimoxazol Trimetoprima/sulfametoxazol Trimetoprim/sulfametossazolo Triméthoprime/sulfaméthoxazole Trimethoprim/sulfametoxazol Trimethoprim/sulfamethoxazol Trimetoprim/sulfametoxazol Триметоприм/сульфаметоксазол
Troleandomycin FALSE TRUE TRUE FALSE Troleandomycin Troleandomycine Troleandomicina Troleandomicina Troleandomycine Troleandomicina Troleandomycin Troleandomycin FALSE TRUE TRUE FALSE Troleandomycin Troleandomycine Troleandomicina Troleandomicina Troleandomycine Troleandomicina Troleandomycin Troleandomycin Тролеандомицин
Trovafloxacin FALSE TRUE TRUE FALSE Trovafloxacin Trovafloxacine Trovafloxacina Trovafloxacin Trovafloxacine Trovafloxacin Trovafloxacin Trovafloxacin FALSE TRUE TRUE FALSE Trovafloxacin Trovafloxacine Trovafloxacina Trovafloxacin Trovafloxacine Trovafloxacin Trovafloxacin Trovafloxacin Тровафлоксацин
Vancomycin FALSE TRUE TRUE FALSE Vancomycin Vancomycine Vancomicina Vancomicina Vancomycine Vancomycin Vancomycin Vancomycin FALSE TRUE TRUE FALSE Vancomycin Vancomycine Vancomicina Vancomicina Vancomycine Vancomycin Vancomycin Vancomycin Ванкомицин
Voriconazole FALSE TRUE TRUE FALSE Voriconazol Voriconazol Voriconazol Voriconazolo Voriconazole Voriconazol Voriconazol Voriconazole FALSE TRUE TRUE FALSE Voriconazol Voriconazol Voriconazol Voriconazolo Voriconazole Voriconazol Voriconazol Vorikonazol Вориконазол
Aminoglycosides FALSE TRUE TRUE FALSE Aminoglykoside Aminoglycosiden Aminoglucósidos Aminoglicosidi Aminoglycosides Aminoglycosides Aminoglykosider Aminoglycosides FALSE TRUE TRUE FALSE Aminoglykoside Aminoglycosiden Aminoglucósidos Aminoglicosidi Aminoglycosides Aminoglycosides Aminoglykosider Aminoglykosider Аминогликозиды
Amphenicols FALSE TRUE TRUE FALSE Amphenicole Amfenicolen Anfenicoles Amphenicols Amphénicols Anfenicóis Amphenicoler Amphenicols FALSE TRUE TRUE FALSE Amphenicole Amfenicolen Anfenicoles Amphenicols Amphénicols Anfenicóis Amphenicoler Amfenikoler Амфениколы
Antifungals/antimycotics FALSE TRUE TRUE FALSE Antimykotika/Antimykotika Antifungica/antimycotica Antifúngicos/antimicóticos Antifungini/antimicotici Antifongiques/antimycotiques Antifúngicos/antimicóticos Antimykotika/antimykotika Antifungals/antimycotics FALSE TRUE TRUE FALSE Antimykotika/Antimykotika Antifungica/antimycotica Antifúngicos/antimicóticos Antifungini/antimicotici Antifongiques/antimycotiques Antifúngicos/antimicóticos Antimykotika/antimykotika Antimykotika/antimykotika Противогрибковые препараты/антимикотики
Antimycobacterials FALSE TRUE TRUE FALSE Antimykobakterielle Mittel Antimycobacteriele middelen Antimicrobianos Antimicobatterici Antimycobactériens Antimycobacterials Antimycobakterier Antimycobacterials FALSE TRUE TRUE FALSE Antimykobakterielle Mittel Antimycobacteriele middelen Antimicrobianos Antimicobatterici Antimycobactériens Antimycobacterials Antimycobakterier Antimykobakterier Антимикобактериальные препараты
Beta-lactams/penicillins FALSE TRUE TRUE FALSE Beta-Lactame/Penicilline Beta-lactams/penicillines Beta-lactámicos/penicilinas Beta-lattami/penicilline Bêta-lactamines/pénicillines Beta-lactâmicas/penicilinas Beta-lactamer/penicilliner Beta-lactams/penicillins FALSE TRUE TRUE FALSE Beta-Lactame/Penicilline Beta-lactams/penicillines Beta-lactámicos/penicilinas Beta-lattami/penicilline Bêta-lactamines/pénicillines Beta-lactâmicas/penicilinas Beta-lactamer/penicilliner Beta-laktamer/penicilliner Бета-лактамы/пенициллины
Cephalosporins (1st gen.) FALSE TRUE TRUE FALSE Cephalosporine (1. Gen.) Cefalosporines (1e gen.) Cefalosporinas (1er gen.) Cefalosporine (1° gen.) Céphalosporines (1ère génération) Cefalosporinas (1º género) Cefalosporiner (1. gen.) Cephalosporins (1st gen.) FALSE TRUE TRUE FALSE Cephalosporine (1. Gen.) Cefalosporines (1e gen.) Cefalosporinas (1er gen.) Cefalosporine (1° gen.) Céphalosporines (1ère génération) Cefalosporinas (1º género) Cefalosporiner (1. gen.) Kefalosporiner (första gen.) Цефалоспорины (1-го пок.)
Cephalosporins (2nd gen.) FALSE TRUE TRUE FALSE Cephalosporine (2. Gen.) Cefalosporines (2e gen.) Cefalosporinas (2do gen.) Cefalosporine (2° gen.) Céphalosporines (2ème génération) Cefalosporinas (2ª gen.) Cefalosporiner (2. gen.) Cephalosporins (2nd gen.) FALSE TRUE TRUE FALSE Cephalosporine (2. Gen.) Cefalosporines (2e gen.) Cefalosporinas (2do gen.) Cefalosporine (2° gen.) Céphalosporines (2ème génération) Cefalosporinas (2ª gen.) Cefalosporiner (2. gen.) Kefalosporiner (andra gen.) Цефалоспорины (2-го пок.)
Cephalosporins (3rd gen.) FALSE TRUE TRUE FALSE Cephalosporine (3. Gen.) Cefalosporines (3e gen.) Cefalosporinas (3er gen.) Cefalosporine (3° gen.) Céphalosporines (3ème génération) Cefalosporinas (3ª gen.) Cefalosporiner (3. gen.) Cephalosporins (3rd gen.) FALSE TRUE TRUE FALSE Cephalosporine (3. Gen.) Cefalosporines (3e gen.) Cefalosporinas (3er gen.) Cefalosporine (3° gen.) Céphalosporines (3ème génération) Cefalosporinas (3ª gen.) Cefalosporiner (3. gen.) Kefalosporiner (tredje gen.) Цефалоспорины (3-го пок.)
Cephalosporins (4th gen.) FALSE TRUE TRUE FALSE Cephalosporine (4. Gen.) Cefalosporines (4e gen.) Cefalosporinas (4ª gen.) Cefalosporine (4° gen.) Céphalosporines (4ème génération) Cefalosporinas (4.ª gen.) Cefalosporiner (4. gen.) Cephalosporins (4th gen.) FALSE TRUE TRUE FALSE Cephalosporine (4. Gen.) Cefalosporines (4e gen.) Cefalosporinas (4ª gen.) Cefalosporine (4° gen.) Céphalosporines (4ème génération) Cefalosporinas (4.ª gen.) Cefalosporiner (4. gen.) Kefalosporiner (4:e gen.) Цефалоспорины (4-го пок.)
Cephalosporins (5th gen.) FALSE TRUE TRUE FALSE Cephalosporine (5. Gen.) Cefalosporines (5e gen.) Cefalosporinas (5º gen.) Cefalosporine (5° gen.) Céphalosporines (5e gén.) Cefalosporinas (5.ª gen.) Cefalosporiner (5. gen.) Cephalosporins (5th gen.) FALSE TRUE TRUE FALSE Cephalosporine (5. Gen.) Cefalosporines (5e gen.) Cefalosporinas (5º gen.) Cefalosporine (5° gen.) Céphalosporines (5e gén.) Cefalosporinas (5.ª gen.) Cefalosporiner (5. gen.) Kefalosporiner (5:e gen.) Цефалоспорины (5-го пок.)
Cephalosporins (unclassified gen.) FALSE TRUE TRUE FALSE Cephalosporine (unklassifiziert) Cefalosporines (ongeclassificeerd) Cefalosporinas (gen. no clasificado) Cefalosporine (gen. non classificato) Céphalosporines (genre non classifié) Cefalosporinas (não classificado gen.) Cefalosporiner (uklassificeret gen.) Cephalosporins (unclassified gen.) FALSE TRUE TRUE FALSE Cephalosporine (unklassifiziert) Cefalosporines (ongeclassificeerd) Cefalosporinas (gen. no clasificado) Cefalosporine (gen. non classificato) Céphalosporines (genre non classifié) Cefalosporinas (não classificado gen.) Cefalosporiner (uklassificeret gen.) Kefalosporiner (oklassificerad gen.) Цефалоспорины (неклассифицированный род)
Cephalosporins FALSE TRUE TRUE FALSE Cephalosporine Cefalosporines Cefalosporinas Cefalosporine Céphalosporines Cefalosporinas Cefalosporiner Cephalosporins FALSE TRUE TRUE FALSE Cephalosporine Cefalosporines Cefalosporinas Cefalosporine Céphalosporines Cefalosporinas Cefalosporiner Kefalosporiner Цефалоспорины
Glycopeptides FALSE TRUE TRUE FALSE Glykopeptide Glycopeptiden Glicopéptidos Glicopeptidi Glycopeptides Glycopeptides Glykopeptider Glycopeptides FALSE TRUE TRUE FALSE Glykopeptide Glycopeptiden Glicopéptidos Glicopeptidi Glycopeptides Glycopeptides Glykopeptider Glykopeptider Гликопептиды
Macrolides/lincosamides FALSE TRUE TRUE FALSE Makrolide/Linkosamide Macroliden/lincosamiden Macrólidos/lincosamidas Macrolidi/lincosamidi Macrolides/lincosamides Macrolides/lincosamidas Makrolider/lincosamider Macrolides/lincosamides FALSE TRUE TRUE FALSE Makrolide/Linkosamide Macroliden/lincosamiden Macrólidos/lincosamidas Macrolidi/lincosamidi Macrolides/lincosamides Macrolides/lincosamidas Makrolider/lincosamider Makrolider/linkosamider Макролиды/линкозамиды
Other antibacterials FALSE TRUE TRUE FALSE Andere Antibiotika Overige antibiotica Otros antibacterianos Altri antibatterici Autres antibactériens Outros antibacterianos Andre antibakterielle stoffer Other antibacterials FALSE TRUE TRUE FALSE Andere Antibiotika Overige antibiotica Otros antibacterianos Altri antibatterici Autres antibactériens Outros antibacterianos Andre antibakterielle stoffer Andra antibakteriella medel Другие антибактериальные препараты
Polymyxins FALSE TRUE TRUE FALSE Polymyxine Polymyxines Polimixinas Polimixine Polymyxines Polimixinas Polymyxiner Polymyxins FALSE TRUE TRUE FALSE Polymyxine Polymyxines Polimixinas Polimixine Polymyxines Polimixinas Polymyxiner Polymyxiner Полимиксины
Quinolones FALSE TRUE TRUE FALSE Quinolone Quinolonen Quinolonas Chinoloni Quinolones Quinolones Kinoloner Quinolones FALSE TRUE TRUE FALSE Quinolone Quinolonen Quinolonas Chinoloni Quinolones Quinolones Kinoloner Kinoloner Хинолоны

1 pattern regular_expr case_sensitive affect_ab_name affect_mo_name de nl es it fr pt da sv ru
2 Coagulase-negative Staphylococcus TRUE TRUE FALSE TRUE Koagulase-negative Staphylococcus Coagulase-negatieve Staphylococcus Staphylococcus coagulasa negativo Staphylococcus negativo coagulasi Staphylococcus à coagulase négative Staphylococcus coagulase negativo Koagulase-negative stafylokokker Koagulasnegativa stafylokocker Коагулазоотрицательный стафилококк
3 Coagulase-positive Staphylococcus TRUE TRUE FALSE TRUE Koagulase-positive Staphylococcus Coagulase-positieve Staphylococcus Staphylococcus coagulasa positivo Staphylococcus positivo coagulasi Staphylococcus à coagulase positif Staphylococcus coagulase positivo Koagulase-positive stafylokokker Koagulaspositiva stafylokocker Коагулазоположительный стафилококк
4 Beta-haemolytic Streptococcus TRUE TRUE FALSE TRUE Beta-hämolytischer Streptococcus Beta-hemolytische Streptococcus Streptococcus Beta-hemolítico Streptococcus Beta-emolitico Streptococcus Bêta-hémolytique Streptococcus Beta-hemolítico Beta-haemolytiske streptokokker Beta-hemolytiska streptokocker Бета-гемолитический стрептококк
5 unknown Gram-negatives TRUE TRUE FALSE TRUE unbekannte Gramnegativen onbekende Gram-negatieven Gram negativos desconocidos Gram negativi sconosciuti Gram négatifs inconnus Gram negativos desconhecidos ukendte Gram-negative okända gramnegativa bakterier неизвестные грамотрицательные
6 unknown Gram-positives TRUE TRUE FALSE TRUE unbekannte Grampositiven onbekende Gram-positieven Gram positivos desconocidos Gram positivi sconosciuti Gram positifs inconnus Gram positivos desconhecidos ukendte Gram-positive okända Gram-positiva неизвестные грамположительные
7 unknown fungus TRUE TRUE FALSE TRUE unbekannter Pilze onbekende schimmel hongo desconocido fungo sconosciuto champignon inconnu fungo desconhecido ukendt svamp Okänd svamp неизвестный грибок
8 unknown yeast TRUE TRUE FALSE TRUE unbekannte Hefe onbekende gist levadura desconocida lievito sconosciuto levure inconnue levedura desconhecida ukendt gær Okänd jäst неизвестные дрожжи
9 unknown name TRUE TRUE FALSE TRUE unbekannte Name onbekende naam nombre desconocido nome sconosciuto nom inconnu nome desconhecido ukendt navn okänt namn неизвестное название
10 unknown kingdom TRUE TRUE FALSE TRUE unbekanntes Reich onbekend koninkrijk reino desconocido regno sconosciuto règme inconnu reino desconhecido ukendt kongerige okänt rike неизвестное царство
11 unknown phylum TRUE TRUE FALSE TRUE unbekannter Stamm onbekend fylum filo desconocido phylum sconosciuto embranchement inconnu filo desconhecido ukendt stamme okänt fylum неизвестный филум
12 unknown class TRUE TRUE FALSE TRUE unbekannte Klasse onbekende klasse clase desconocida classe sconosciuta classe inconnue classe desconhecida ukendt klasse okänd klass неизвестный класс
13 unknown order TRUE TRUE FALSE TRUE unbekannte Ordnung onbekende orde orden desconocido ordine sconosciuto ordre inconnu ordem desconhecido ukendt orden okänd ordning неизвестный порядок
14 unknown family TRUE TRUE FALSE TRUE unbekannte Familie onbekende familie familia desconocida famiglia sconosciuta famille inconnue família desconhecida ukendt familie okänd familj неизвестное семейство
15 unknown genus TRUE TRUE FALSE TRUE unbekannte Gattung onbekend geslacht género desconocido genere sconosciuto genre inconnu gênero desconhecido ukendt slægt okänt släkte неизвестный род
16 unknown species TRUE TRUE FALSE TRUE unbekannte Art onbekende soort especie desconocida specie sconosciute espèce inconnue espécies desconhecida ukendt art okänd art неизвестный вид
17 unknown subspecies TRUE TRUE FALSE TRUE unbekannte Unterart onbekende ondersoort subespecie desconocida sottospecie sconosciute sous-espèce inconnue subespécies desconhecida ukendt underart okänd underart неизвестный подвид
18 unknown rank TRUE TRUE FALSE TRUE unbekannter Rang onbekende rang rango desconocido grado sconosciuto rang inconnu classificação desconhecido ukendt rang okänd rang неизвестный ранг
19 group TRUE TRUE FALSE TRUE Gruppe groep grupo gruppo groupe grupo gruppe grupp группа
20 CoNS FALSE TRUE FALSE TRUE KNS CNS SCN KNS KNS КОС
21 CoPS FALSE TRUE FALSE TRUE KPS CPS SCP KPS KPS КПС
22 Gram-negative TRUE TRUE FALSE FALSE Gramnegativ Gram-negatief Gram negativo Gram negativo Gram négatif Gram negativo Gram-negativ Gram-negativ Грамотрицательные
23 Gram-positive TRUE TRUE FALSE FALSE Grampositiv Gram-positief Gram positivo Gram positivo Gram positif Gram positivo Gram-positiv Gram-positiv Грамположительные
24 ^Bacteria$ TRUE TRUE FALSE FALSE Bakterien Bacteriën Bacterias Batteri Bactéries Bactérias Bakterier Bakterier Бактерии
25 ^Fungi$ TRUE TRUE FALSE FALSE Pilze Schimmels Hongos Funghi Champignons Fungos Støbeforme Svampar Грибы
26 ^Yeasts$ TRUE TRUE FALSE FALSE Hefen Gisten Levaduras Lieviti Levures Leveduras Gær Jästdjur Животные
27 ^Protozoa$ TRUE TRUE FALSE FALSE Protozoen Protozoën Protozoarios Protozoi Protozoaires Protozoários Protozoer Protozoer Протозоа
28 biogroup TRUE TRUE FALSE FALSE Biogruppe biogroep biogrupo biogruppo biogroupe biogrupo biogruppe biogrupp биогруппа
29 biotype TRUE TRUE FALSE FALSE Biotyp biotipo biotipo biótipo biotype biotyp биотип
30 vegetative TRUE TRUE FALSE FALSE vegetativ vegetatief vegetativo vegetativo végétatif vegetativo vegetativ vegetativ вегетативный
31 ([([ ]*?)group TRUE TRUE FALSE FALSE \\1Gruppe \\1groep \\1grupo \\1gruppo \\1groupe \\1grupo \\1gruppe \\1grupp \\1группа
32 ([([ ]*?)Group TRUE TRUE FALSE FALSE \\1Gruppe \\1Groep \\1Grupo \\1Gruppo \\1Groupe \\1Grupo \\1Gruppe \\1Grupp \\1Группа
33 no .*growth TRUE FALSE FALSE FALSE keine? .*wachstum geen .*groei no .*crecimientonon sem .*crescimento pas .*croissance sem .*crescimento ingen .*vækst ingen .*tillväxt отсутствие.*роста
34 no|not TRUE FALSE FALSE FALSE keine? geen|niet no|sin sem non sem nej|ikke nej|inte нет?
35 Intermediate TRUE FALSE FALSE FALSE Mittlere Intermediair Intermedio
36 Susceptible, incr. exp. FALSE TRUE FALSE FALSE Empfindlich, erh Belastung Gevoelig, hoge dosis
37 susceptible, incr. exp. FALSE TRUE FALSE FALSE empfindlich, erh Belastung gevoelig, hoge dosis
38 Susceptible TRUE FALSE FALSE FALSE Empfindlich Gevoelig Susceptible
39 Incr. exposure TRUE FALSE FALSE FALSE Empfindlich, erh Belastung 'Incr. exposure' 'Incr. exposure'
40 Resistant TRUE FALSE FALSE FALSE Resistent Resistent Resistente
41 antibiotic TRUE TRUE FALSE FALSE Antibiotikum antibioticum antibiótico antibiotico antibiotique antibiótico antibiotikum antibiotika антибиотик
42 Antibiotic TRUE TRUE FALSE FALSE Antibiotikum Antibioticum Antibiótico Antibiotico Antibiotique Antibiótico Antibiotikum Antibiotika Антибиотик
43 Drug TRUE TRUE FALSE FALSE Medikament Middel Fármaco Droga Médicament Droga Lægemiddel Läkemedel Лекарство
44 drug TRUE TRUE FALSE FALSE Medikament middel fármaco droga médicament droga lægemiddel läkemedel лекарство
45 Frequency FALSE TRUE FALSE FALSE Zahl Aantal Frecuencia Frequenza Fréquence Frequência Frekvens Frekvens Частота
46 Minimum Inhibitory Concentration (mg/L) FALSE FALSE FALSE FALSE Minimale Hemm-Konzentration (mg/L) Minimale inhiberende concentratie (mg/L) Concentración mínima inhibitoria (mg/L) Concentrazione minima inibitoria (mg/L) Concentration minimale inhibitrice (mg/L) Concentração Inibitória Mínima (mg/L) Mindste hæmmende koncentration (mg/L) Minsta hämmande koncentration (mg/L) Минимальная ингибирующая концентрация (мг/л)
47 Disk diffusion diameter (mm) FALSE FALSE FALSE FALSE Durchmesser der Scheibenzone (mm) Diameter diskzone (mm) Diámetro de difusión en disco (mm) Diametro di diffusione del disco (mm) Diamètre de diffusion en disque (mm) Diâmetro de difusão do disco (mm) Diskdiffusionsdiameter (mm) Diskdiffusionsdiameter (mm) Диаметр диффузии диска (мм)
48 Antimicrobial Interpretation FALSE FALSE FALSE FALSE Antimikrobielle Auswertung Antimicrobiële interpretatie Interpretación antimicrobiana Interpretazione antimicrobica Interprétation antimicrobienne Interpretação Antimicrobiana Antimikrobiel fortolkning Antimikrobiell tolkning Антимикробная интерпретация
49 4-aminosalicylic acid FALSE TRUE TRUE FALSE 4-Aminosalicylsäure 4-aminosalicylzuur Ácido 4-aminosalicílico Acido 4-aminosalicilico Acide 4-aminosalicylique Ácido 4-aminosalicílico 4-aminosalicylsyre 4-aminosalicylsyra 4-аминосалициловая кислота
50 Adefovir dipivoxil FALSE TRUE TRUE FALSE Adefovir Dipivoxil Adefovir Adefovir dipivoxil Adefovir dipivoxil Adéfovir dipivoxil Adefovir dipivoxil Adefovir dipivoxil Adefovir dipivoxil Адефовир дипивоксил
51 Aldesulfone sodium FALSE TRUE TRUE FALSE Aldesulfon-Natrium Aldesulfon Aldesulfona sódica Aldesulfone sodio Aldésulfone sodique Aldesulfona de sódio Aldesulfon-natrium Aldesulfonnatrium Альдесульфон натрия
52 Amikacin FALSE TRUE TRUE FALSE Amikacin Amikacine Amikacina Amikacin Amikacine Amikacin Amikacin Amikacin Амикацин
53 Amoxicillin FALSE TRUE TRUE FALSE Amoxicillin Amoxicilline Amoxicilina Amoxicillina Amoxicilline Amoxicilina Amoxicillin Amoxicillin Амоксициллин
54 Amoxicillin/beta-lactamase inhibitor FALSE TRUE TRUE FALSE Amoxicillin/Beta-Lactamase-Hemmer Amoxicilline/enzymremmer Amoxicilina/inhib. de la beta-lactamasa Amoxicillina/inib. d. beta-lattamasi Amoxicilline/inhib. de bêta-lactamase Amoxicilina/inibid. da beta-lactamase Amoxicillin/beta-lactamasehæmmer Amoxicillin/betalaktamashämmare Амоксициллин/ингибитор бета-лактамаз
55 Amphotericin B FALSE TRUE TRUE FALSE Amphotericin B Amfotericine B Anfotericina B Amfotericina B Amphotéricine B Anfotericina B Amfotericin B Amfotericin B Амфотерицин В
56 Ampicillin FALSE TRUE TRUE FALSE Ampicillin Ampicilline Ampicilina Ampicillina Ampicilline Ampicilina Ampicillin Ampicillin Ампициллин
57 Ampicillin/beta-lactamase inhibitor FALSE TRUE TRUE FALSE Ampicillin/Beta-Laktamase-Hemmer Ampicilline/enzymremmer Ampicilina/inhib. de la beta-lactamasa Ampicillina/inib. d. beta-lattamasi Ampicilline/inhib. de bêta-lactamase Ampicilina/inibid. da beta-lactamase Ampicillin/beta-lactamasehæmmer Ampicillin/beta-laktamashämmare Ампициллин/ингибитор бета-лактамазы
58 Anidulafungin FALSE TRUE TRUE FALSE Anidulafungin Anidulafungine Anidulafungina Anidulafungin Anidulafungine Anidulafungin Anidulafungin Anidulafungin Анидулафунгин
59 Azidocillin FALSE TRUE TRUE FALSE Azidocillin Azidocilline Azidocilina Azidocillina Azidocilline Azidocillin Azidocillin Azidocillin Азидоциллин
60 Azithromycin FALSE TRUE TRUE FALSE Azithromycin Azitromycine Azitromicina Azitromicina Azithromycine Azitromicina Azithromycin Azitromycin Азитромицин
61 Azlocillin FALSE TRUE TRUE FALSE Azlocillin Azlocilline Azlocilina Azlocillina Azlocilline Azlocillin Azlocillin Azlocillin Азлоциллин
62 Bacampicillin FALSE TRUE TRUE FALSE Bacampicillin Bacampicilline Bacampicilina Bacampicillina Bacampicilline Bacampicilina Bacampicillin Bacampicillin Бакампициллин
63 Bacitracin FALSE TRUE TRUE FALSE Bacitracin Bacitracine Bacitracina Bacitracina Bacitracine Bacitracin Bacitracin Bacitracin Бацитрацин
64 Benzathine benzylpenicillin FALSE TRUE TRUE FALSE Benzathin-Benzylpenicillin Benzylpenicillinebenzathine Bencilpenicilina benzatínica Benzatina benzilpenicillina Benzathine benzylpénicilline Benzatina benzatina benzilpenicilina Benzathinbenzylpenicillin Benzathinbenzylpenicillin Бензатин бензилпенициллин
65 Benzathine phenoxymethylpenicillin FALSE TRUE TRUE FALSE Benzathin-Phenoxymethylpenicillin Fenoxymethylpenicillinebenzathine Fenoximetilpenicilina benzatínica Benzatina fenossimetilpenicillina Phénoxyméthylpénicilline benzathine Benzatina fenoximetilpenicilina Benzathinfenoxymethylpenicillin Bensathinfenoximetylpenicillin Бензатин феноксиметилпенициллин
66 Benzylpenicillin FALSE TRUE TRUE FALSE Benzylpenicillin Benzylpenicilline Bencilpenicilina Benzilpenicillina Benzylpénicilline Benzilpenicilina Benzylpenicillin Bensylpenicillin Бензилпенициллин
67 Calcium aminosalicylate FALSE TRUE TRUE FALSE Kalzium-Aminosalicylat Aminosalicylzuur Aminosalicilato de calcio Calcio aminosalicilato Aminosalicylate de calcium Aminosalicilato de cálcio Calciumaminosalicylat Kalciumaminosalicylat Аминосалицилат кальция
68 Capreomycin FALSE TRUE TRUE FALSE Capreomycin Capreomycine Capreomicina Capreomicina Capréomycine Capreomicina Capreomycin Kapreomycin Капреомицин
69 Carbenicillin FALSE TRUE TRUE FALSE Carbenicillin Carbenicilline Carbenicilina Carbenicillina Carbénicilline Carbenicilina Carbenicillin Karbenicillin Карбенициллин
70 Carindacillin FALSE TRUE TRUE FALSE Carindacillin Carindacilline Carindacilina Carindacillina Carindacilline Carindacillin Carindacillin Carindacillin Кариндациллин
71 Caspofungin FALSE TRUE TRUE FALSE Caspofungin Caspofungine Caspofungina Caspofungin Caspofungine Caspofungin Caspofungin Caspofungin Каспофунгин
72 Ce(f|ph)acetrile TRUE TRUE TRUE FALSE Cefacetril Cefacetril Cefacetrilo Cefacetrile Céphacétrile Cephacetrile Cephacetril Cephacetril Цефацетрил
73 Ce(f|ph)alotin TRUE TRUE TRUE FALSE Cefalotin Cefalotine Cefalotina Cefalotina Céphalotine Cefalotina Cephalotin Cefalotin Цефалотин
74 Ce(f|ph)amandole TRUE TRUE TRUE FALSE Cefamandol Cefamandol Cefamandole Cephamandole Céphamandole Cephamandole Cephamandol Cephamandol Цефамандол
75 Ce(f|ph)apirin TRUE TRUE TRUE FALSE Cefapirin Cefapirine Cefapirina Cefapirina Céphapirine Cephapirin Cephapirin Cephapirin Цефапирин
76 Ce(f|ph)azedone TRUE TRUE TRUE FALSE Cefazedon Cefazedon Cefazedona Cefazedone Céphazédone Cephazedone Cephazedon Cephazedon Цефазедон
77 Ce(f|ph)azolin TRUE TRUE TRUE FALSE Cefazolin Cefazoline Cefazolina Cephazolin Céphazoline Cephazolin Cephazolin Cephazolin Цефазолин
78 Ce(f|ph)alothin TRUE TRUE TRUE FALSE Cefalothin Cefalotine Cefalotina Cefalotina Céphalothine Cephalothin Cephalothin Kefalotin Цефалотин
79 Ce(f|ph)alexin TRUE TRUE TRUE FALSE Cefalexin Cefalexine Cefalexina Cephalexin Céphalexine Cephalexin Cephalexin Cephalexin Цефалексин
80 Ce(f|ph)epime TRUE TRUE TRUE FALSE Cefepim Cefepim Cefepime Cephepime Céphépime Cephepime Cephepime Cephepim Цефепим
81 Ce(f|ph)ixime TRUE TRUE TRUE FALSE Cefixim Cefixim Cefixima Cephixime Céphixime Cephixime Cephixim Cephixim Цефиксим
82 Ce(f|ph)menoxime TRUE TRUE TRUE FALSE Cefmenoxim Cefmenoxim Cefmenoxima Cephmenoxime Céphénoxime Cephmenoxime Cephmenoxim Cephmenoxim Цефменоксим
83 Ce(f|ph)metazole TRUE TRUE TRUE FALSE Cefmetazol Cefmetazol Cefmetazol Cephmetazole Céphmétazole Cefmetazole Cephmetazol Cephmetazol Цефметазол
84 Ce(f|ph)odizime TRUE TRUE TRUE FALSE Cefodizim Cefodizim Cefodixima Cephodizime Céphodizime Cephodizime Cephodizim Cephodizim Цефодизим
85 Ce(f|ph)onicid TRUE TRUE TRUE FALSE Cefonicid Cefonicide Cefonicida Cephonicid Céphonicide Cefonicid Cephonicid Cephonicid Цефонизид
86 Ce(f|ph)operazone TRUE TRUE TRUE FALSE Cefoperazon Cefoperazon Cefoperazona Cephoperazone Céphopérazone Cephoperazone Cephoperazon Cephoperazon Цефоперазон
87 Ce(f|ph)operazone/beta-lactamase inhibitor TRUE TRUE TRUE FALSE Cefoperazon/Beta-Lactamase-Hemmer Cefoperazon/enzymremmer Cefoperazona/inhib. de betalactamasas Cephoperazone/inib. d. beta-lattamasi Céphopérazone/inhib. de bêta-lactamase Cephoperazona/inibid. da beta-lactamase Cephoperazon/beta-lactamasehæmmer Cefoperazon/beta-laktamashämmare Цефоперазон/ингибитор бета-лактамаз
88 Ce(f|ph)otaxime TRUE TRUE TRUE FALSE Cefotaxim Cefotaxim Cefotaxima Cephotaxime Céphotaxime Cephotaxime Cephotaxim Cephotaxim Цефотаксим
89 Ce(f|ph)oxitin TRUE TRUE TRUE FALSE Cefoxitin Cefoxitine Cefoxitina Cefossitina Céphoxitine Cephoxitin Cephoxitin Cephoxitin Цефокситин
90 Ce(f|ph)pirome TRUE TRUE TRUE FALSE Cefpirom Cefpirom Cephpirome Cephpirome Céphpirome Cefpirome Cephpirom Cephpirom Цефпиром
91 Ce(f|ph)podoxime TRUE TRUE TRUE FALSE Cefpodoxim Cefpodoxim Cefpodoxima Cephpodoxime Céphpodoxime Cephpodoxime Cephpodoxim Cephpodoxim Цефподоксим
92 Ce(f|ph)radine TRUE TRUE TRUE FALSE Cefradin Cefradine Cefradina Cefradina Céphradine Cephradine Cephradin Cephradin Цефрадин
93 Ce(f|ph)sulodin TRUE TRUE TRUE FALSE Cefsulodin Cefsulodine Cefsulodina Cephsulodin Céphsulodine Cephsulodin Cephsulodin Cephsulodin Цефсулодин
94 Ce(f|ph)tazidime TRUE TRUE TRUE FALSE Ceftazidim Ceftazidim Ceftazidima Ceftazidima Céphtazidime Ceftazidima Cephtazidim Cephtazidim Цефтазидим
95 Ce(f|ph)tezole TRUE TRUE TRUE FALSE Ceftezol Ceftezol Ceftezol Cephtezole Céphtézole Ceftezole Cephtezol Cephtezole Цефтезол
96 Ce(f|ph)tizoxime TRUE TRUE TRUE FALSE Ceftizoxim Ceftizoxim Ceftizoxima Cephtizoxime Céphtizoxime Cephtizoxime Cephtizoxim Cephtizoxim Цефтизоксим
97 Ce(f|ph)triaxone TRUE TRUE TRUE FALSE Ceftriaxon Ceftriaxon Ceftriaxona Ceftriaxone Céphtriaxone Cefhtriaxone Cephtriaxon Ceftriaxon Цефтриаксон
98 Ce(f|ph)uroxime TRUE TRUE TRUE FALSE Cefuroxim Cefuroxim Cefuroxima Cefuroxima Céphuroxime Cephuroxime Cephuroxim Cefuroxim Цефуроксим
99 Ce(f|ph)uroxime/metronidazole TRUE TRUE TRUE FALSE Cefuroxim/Metronidazol Cefuroxim/andere antibacteriele middelen Cefuroxima/metronidazol Cefuroxima/metronidazolo Céphuroxime/métronidazole Cephuroxime/metronidazol Cefuroxim/metronidazol Cefuroxim/metronidazol Цефуроксим/метронидазол
100 Chloramphenicol FALSE TRUE TRUE FALSE Chloramphenicol Chlooramfenicol Cloranfenicol Cloramfenicolo Chloramphénicol Cloranfenicol Kloramfenicol Kloramfenikol Хлорамфеникол
101 Chlortetracycline FALSE TRUE TRUE FALSE Chlortetracyclin Chloortetracycline Clortetraciclina Clorotetraciclina Chlortétracycline Chlortetracycline Chlortetracyclin Klortetracyklin Хлортетрациклин
102 Cinoxacin FALSE TRUE TRUE FALSE Cinoxacin Cinoxacine Cinoxacina Cinoxacina Cinoxacine Cinoxacin Cinoxacin Cinoxacin Циноксацин
103 Ciprofloxacin FALSE TRUE TRUE FALSE Ciprofloxacin Ciprofloxacine Ciprofloxacina Ciprofloxacina Ciprofloxacine Ciprofloxacin Ciprofloxacin Ciprofloxacin Ципрофлоксацин
104 Clarithromycin FALSE TRUE TRUE FALSE Clarithromycin Claritromycine Claritromicina Claritromicina Clarithromycine Claritromicina Clarithromycin Claritromycin Кларитромицин
105 Clavulanic acid FALSE TRUE TRUE FALSE Clavulansäure Clavulaanzuur Ácido clavulánico Acido clavulanico Acide clavulanique Ácido clavulânico Clavulansyre Clavulansyra Клавулановая кислота
106 clavulanic acid FALSE TRUE TRUE FALSE Clavulansäure clavulaanzuur ácido clavulánico acido clavulanico acide clavulanique ácido clavulânico clavulansyre clavulansyra клавулановая кислота
107 Clindamycin FALSE TRUE TRUE FALSE Clindamycin Clindamycine Clindamicina Clindamicina Clindamycine Clindamicina Clindamycin Clindamycin Клиндамицин
108 Clometocillin FALSE TRUE TRUE FALSE Clometocillin Clometocilline Clometocilina Clometocillina Clométocilline Clometocillin Clometocillin Klometocillin Клометоциллин
109 Clotrimazole FALSE TRUE TRUE FALSE Clotrimazol Clotrimazol Clotrimazol Clotrimazolo Clotrimazole Clotrimazole Clotrimazol Klotrimazol Клотримазол
110 Cloxacillin FALSE TRUE TRUE FALSE Cloxacillin Cloxacilline Cloxacilina Cloxacillina Cloxacilline Cloxacillin Cloxacillin Kloxacillin Клоксациллин
111 Colistin FALSE TRUE TRUE FALSE Colistin Colistine Colistina Colistina Colistine Colistin Colistin Kolistin Колистин
112 Dapsone FALSE TRUE TRUE FALSE Dapson Dapson Dapsona Dapsone Dapsone Dapsone Dapson Dapson Дапсон
113 Daptomycin FALSE TRUE TRUE FALSE Daptomycin Daptomycine Daptomicina Daptomicina Daptomycine Daptomicina Daptomycin Daptomycin Даптомицин
114 Dibekacin FALSE TRUE TRUE FALSE Dibekacin Dibekacine Dibekacina Dibekacin Dibekacine Dibekacin Dibekacin Dibekacin Дибекацин
115 Dicloxacillin FALSE TRUE TRUE FALSE Dicloxacillin Dicloxacilline Dicloxacilina Dicloxacillina Dicloxacilline Dicloxacilina Dicloxacillin Dikloxacillin Диклоксациллин
116 Dirithromycin FALSE TRUE TRUE FALSE Dirithromycin Diritromycine Diritromicina Diritromicina Dirithromycine Diritromicina Dirithromycin Diritromycin Диритромицин
117 Econazole FALSE TRUE TRUE FALSE Econazol Econazol Econazol Econazolo Econazole Econazole Econazol Ekonazol Эконазол
118 Enoxacin FALSE TRUE TRUE FALSE Enoxacin Enoxacine Enoxacina Enoxacina Enoxacine Enoxacin Enoxacin Enoxacin Эноксацин
119 Epicillin FALSE TRUE TRUE FALSE Epicillin Epicilline Epicilina Epicillina Epicilline Epicilina Epicillin Epicillin Эпициллин
120 Erythromycin FALSE TRUE TRUE FALSE Erythromycin Erytromycine Eritromicina Eritromicina Erythromycine Eritromicina Erythromycin Erytromycin Эритромицин
121 Ethambutol/isoniazid FALSE TRUE TRUE FALSE Ethambutol/Isoniazid Ethambutol/isoniazide Etambutol/isoniazida Etambutolo/isoniazide Ethambutol/isoniazide Ethambutol/isoniazid Ethambutol/isoniazid Etambutol/isoniazid Этамбутол/изониазид
122 Fleroxacin FALSE TRUE TRUE FALSE Fleroxacin Fleroxacine Fleroxacina Fleroxacina Fléroxacine Fleroxacina Fleroxacin Fleroxacin Флероксацин
123 Flucloxacillin FALSE TRUE TRUE FALSE Flucloxacillin Flucloxacilline Flucloxacilina Flucloxacillina Flucloxacilline Flucloxacillin Flucloxacillin Flucloxacillin Флуклоксациллин
124 Fluconazole FALSE TRUE TRUE FALSE Fluconazol Fluconazol Fluconazol Fluconazolo Fluconazole Fluconazole Fluconazol Flukonazol Флуконазол
125 Flucytosine FALSE TRUE TRUE FALSE Flucytosin Fluorocytosine Flucitosina Flucytosine Flucytosine Flucytosine Flucytosin Flucytosin Флуцитозин
126 Flurithromycin FALSE TRUE TRUE FALSE Flurithromycin Fluritromycine Fluritromicina Fluritromicina Flurithromycine Fluritromicina Flurithromycin Fluritromycin Флуритромицин
127 Fosfomycin FALSE TRUE TRUE FALSE Fosfomycin Fosfomycine Fosfomicina Fosfomicina Fosfomycine Fosfomycin Fosfomycin Fosfomycin Фосфомицин
128 Fusidic acid FALSE TRUE TRUE FALSE Fusidinsäure Fusidinezuur Ácido fusídico Acido fusidico Acide fusidique Ácido fusídico Fusidinsyre Fusidinsyra Фузидовая кислота
129 Gatifloxacin FALSE TRUE TRUE FALSE Gatifloxacin Gatifloxacine Gatifloxacina Gatifloxacina Gatifloxacine Gatifloxacin Gatifloxacin Gatifloxacin Гатифлоксацин
130 Gemifloxacin FALSE TRUE TRUE FALSE Gemifloxacin Gemifloxacine Gemifloxacina Gemifloxacina Gemifloxacine Gemifloxacin Gemifloxacin Gemifloxacin Гемифлоксацин
131 Gentamicin FALSE TRUE TRUE FALSE Gentamicin Gentamicine Gentamicina Gentamicina Gentamicine Gentamicina Gentamicin Gentamicin Гентамицин
132 Grepafloxacin FALSE TRUE TRUE FALSE Grepafloxacin Grepafloxacine Grepafloxacina Grepafloxacina Grepafloxacine Grepafloxacin Grepafloxacin Grepafloxacin Грепафлоксацин
133 Hachimycin FALSE TRUE TRUE FALSE Hachimycin Hachimycine Hachimycin Hachimycin Hachimycine Hachimycin Hachimycin Hachimycin Хатимицин
134 Hetacillin FALSE TRUE TRUE FALSE Hetacillin Hetacilline Hetacilina Hetacillin Hétacilline Hetacillin Hetacillin Hetacillin Гетациллин
135 Imipenem/cilastatin FALSE TRUE TRUE FALSE Imipenem/Cilastatin Imipenem/enzymremmer Imipenem/cilastatina Imipenem/cilastatina Imipénème/cilastatine Imipenem/coteltelatina Imipenem/cilastatin Imipenem/cilastatin Имипенем/циластатин
136 Inosine pranobex FALSE TRUE TRUE FALSE Inosin-Pranobex Inosiplex Inosina pranobex Inosina pranobex Inosine pranobex Pranobex inosine Inosin pranobex Inosin pranobex Инозин пранобекс
137 Isepamicin FALSE TRUE TRUE FALSE Isepamicin Isepamicine Isepamicina Isepamicina Isepamicine Isepamicina Isepamicin Isepamicin Исепамицин
138 Isoconazole FALSE TRUE TRUE FALSE Isoconazol Isoconazol Isoconazol Isoconazolo Isoconazole Isoconazole Isoconazol Isokonazol Изоконазол
139 Isoniazid FALSE TRUE TRUE FALSE Isoniazid Isoniazide Isoniazida Isoniazide Isoniazide Isoniazid Isoniazid Isoniazid Изониазид
140 Itraconazole FALSE TRUE TRUE FALSE Itraconazol Itraconazol Itraconazol Itraconazolo Itraconazole Itraconazole Itraconazol Itrakonazol Итраконазол
141 Josamycin FALSE TRUE TRUE FALSE Josamycin Josamycine Josamicina Josamicina Josamycine Josamycin Josamycin Josamycin Джозамицин
142 Kanamycin FALSE TRUE TRUE FALSE Kanamycin Kanamycine Kanamicina Kanamicina Kanamycine Kanamycin Kanamycin Kanamycin Канамицин
143 Ketoconazole FALSE TRUE TRUE FALSE Ketoconazol Ketoconazol Ketoconazol Ketoconazolo Kétoconazole Ketoconazole Ketoconazol Ketokonazol Кетоконазол
144 Levofloxacin FALSE TRUE TRUE FALSE Levofloxacin Levofloxacine Levofloxacina Levofloxacina Lévofloxacine Levofloxacin Levofloxacin Levofloxacin Левофлоксацин
145 Lincomycin FALSE TRUE TRUE FALSE Lincomycin Lincomycine Lincomicina Lincomicina Lincomycine Lincomycin Lincomycin Lincomycin Линкомицин
146 Lomefloxacin FALSE TRUE TRUE FALSE Lomefloxacin Lomefloxacine Lomefloxacina Lomefloxacina Loméfloxacine Lomefloxacin Lomefloxacin Lomefloxacin Ломефлоксацин
147 Lysozyme FALSE TRUE TRUE FALSE Lysozym Lysozym Lisozima Lisozima Lysozyme Lysozyme Lysozym Lysozym Лизоцим
148 Mandelic acid FALSE TRUE TRUE FALSE Mandelsäure Amandelzuur Ácido mandélico Acido mandelico Acide mandélique Ácido mandélico Mandelinsyre Mandelsyra Мандаловая кислота
149 Metampicillin FALSE TRUE TRUE FALSE Metampicillin Metampicilline Metampicilina Metampicillina Métampicilline Metampicilina Metampicillin Metampicillin Метампициллин
150 Meticillin FALSE TRUE TRUE FALSE Meticillin Meticilline Meticilina Meticillina Méticilline Meticillin Meticillin Meticillin Метициллин
151 Metisazone FALSE TRUE TRUE FALSE Metisazon Metisazon Metisazona Metisazone Métisazone Metisazone Metisazon Metisazon Метисазон
152 Metronidazole FALSE TRUE TRUE FALSE Metronidazol Metronidazol Metronidazol Metronidazolo Métronidazole Metronidazol Metronidazol Metronidazol Метронидазол
153 Mezlocillin FALSE TRUE TRUE FALSE Mezlocillin Mezlocilline Mezlocilina Mezlocillina Mezlocilline Mezlocillin Mezlocillin Mezlocillin Мезлоциллин
154 Micafungin FALSE TRUE TRUE FALSE Micafungin Micafungine Micafungina Micafungin Micafungine Micafungin Micafungin Micafungin Микафунгин
155 Miconazole FALSE TRUE TRUE FALSE Miconazol Miconazol Miconazol Miconazolo Miconazole Miconazole Miconazol Miconazol Миконазол
156 Midecamycin FALSE TRUE TRUE FALSE Midecamycin Midecamycine Midecamicina Midecamicina Midecamycine Midecamycin Midecamycin Midecamycin Мидекамицин
157 Miocamycin FALSE TRUE TRUE FALSE Miocamycin Miocamycine Miocamycin Miocamicina Miocamycine Miocamicina Miocamycin Miocamycin Миокамицин
158 Moxifloxacin FALSE TRUE TRUE FALSE Moxifloxacin Moxifloxacine Moxifloxacina Moxifloxacin Moxifloxacine Moxifloxacina Moxifloxacin Moxifloxacin Моксифлоксацин
159 Mupirocin FALSE TRUE TRUE FALSE Mupirocin Mupirocine Mupirocina Mupirocina Mupirocine Mupirocina Mupirocin Mupirocin Мупироцин
160 Nalidixic acid FALSE TRUE TRUE FALSE Nalidixinsäure Nalidixinezuur Ácido nalidíxico Acido nalidixico Acide nalidixique Ácido nalidíxico Nalidixinsyre Nalidixinsyra Налидиксовая кислота
161 Neomycin FALSE TRUE TRUE FALSE Neomycin Neomycine Neomicina Neomicina Néomycine Neomicina Neomycin Neomycin Неомицин
162 Netilmicin FALSE TRUE TRUE FALSE Netilmicin Netilmicine Netilmicina Netilmicin Netilmicine Netilmicin Netilmicin Netilmicin Нетилмицин
163 Nitrofurantoin FALSE TRUE TRUE FALSE Nitrofurantoin Nitrofurantoine Nitrofurantoína Nitrofurantoina Nitrofurantoïne Nitrofurantoína Nitrofurantoin Nitrofurantoin Нитрофурантоин
164 Norfloxacin FALSE TRUE TRUE FALSE Norfloxacin Norfloxacine Norfloxacina Norfloxacina Norfloxacine Norfloxacin Norfloxacin Norfloxacin Норфлоксацин
165 Novobiocin FALSE TRUE TRUE FALSE Novobiocin Novobiocine Novobiocina Novobiocin Novobiocine Novobiocin Novobiocin Novobiocin Новобиоцин
166 Nystatin FALSE TRUE TRUE FALSE Nystatin Nystatine Nistatina Nystatin Nystatine Nystatin Nystatin Nystatin Нистатин
167 Ofloxacin FALSE TRUE TRUE FALSE Ofloxacin Ofloxacine Ofloxacina Ofloxacin Ofloxacine Ofloxacin Ofloxacin Ofloxacin Офлоксацин
168 Oleandomycin FALSE TRUE TRUE FALSE Oleandomycin Oleandomycine Oleandomicina Oleandomicina Oleandomycine Oleandomicina Oleandomycin Oleandomycin Олеандомицин
169 Ornidazole FALSE TRUE TRUE FALSE Ornidazol Ornidazol Ornidazol Ornidazolo Ornidazole Ornidazole Ornidazol Ornidazol Орнидазол
170 Oxacillin FALSE TRUE TRUE FALSE Oxacillin Oxacilline Oxacilina Oxacillina Oxacilline Oxacillin Oxacillin Oxacillin Оксациллин
171 Oxolinic acid FALSE TRUE TRUE FALSE Oxolinsäure Oxolinezuur Ácido oxolínico Acido ossolinico Acide oxolinique Ácido oxolínico Oxolinsyre Oxolinsyra Оксолиновая кислота
172 Oxytetracycline FALSE TRUE TRUE FALSE Oxytetracyclin Oxytetracycline Oxitetraciclina Ossitetraciclina Oxytétracycline Oxitetraciclina Oxytetracyclin Oxytetracyklin Окситетрациклин
173 Pazufloxacin FALSE TRUE TRUE FALSE Pazufloxacin Pazufloxacine Pazufloxacina Pazufloxacin Pazufloxacine Pazufloxacin Pazufloxacin Pazufloxacin Пазуфлоксацин
174 Pefloxacin FALSE TRUE TRUE FALSE Pefloxacin Pefloxacine Pefloxacina Pefloxacina Péfloxacine Pefloxacin Pefloxacin Pefloxacin Пефлоксацин
175 Penamecillin FALSE TRUE TRUE FALSE Penamecillin Penamecilline Penamecilina Penamecillina Pénamécilline Penamecilina Penamecillin Penamecillin Пенамециллин
176 Penicillin FALSE TRUE TRUE FALSE Penicillin Penicilline Penicilina Penicillina Pénicilline Penicilina Penicillin Penicillin Пенициллин
177 Pheneticillin FALSE TRUE TRUE FALSE Pheneticillin Feneticilline Feneticilina Feneticillina Phénéticilline Pheneticillin Pheneticillin Feneticillin Фенетициллин
178 Phenoxymethylpenicillin FALSE TRUE TRUE FALSE Phenoxymethylpenicillin Fenoxymethylpenicilline Fenoximetilpenicilina Fenossimetilpenicillina Phénoxyméthylpénicilline Fenoximetilpenicilina Phenoxymethylpenicillin Fenoximetylpenicillin Феноксиметилпенициллин
179 Pipemidic acid FALSE TRUE TRUE FALSE Pipemidinsäure Pipemidinezuur Ácido pipemídico Acido pipemidico Acide pipémidique Ácido pipemídico Pipemidinsyre Pipemidinsyra Пипемидовая кислота
180 Piperacillin FALSE TRUE TRUE FALSE Piperacillin Piperacilline Piperacilina Piperacillina Pipéracilline Piperacilina Piperacillin Piperacillin Пиперациллин
181 Piperacillin/beta-lactamase inhibitor FALSE TRUE TRUE FALSE Piperacillin/Beta-Lactamase-Hemmer Piperacilline/enzymremmer Piperacilina/inhib. de la beta-lactamasa Piperacillina/inib. d. beta-lattamasi Pipéracilline/inhib. de bêta-lactamase Piperacilina/inibid. da beta-lactamase Piperacillin/beta-lactamasehæmmer Piperacillin/betalaktamashämmare Пиперациллин/ингибитор бета-лактамазы
182 Piromidic acid FALSE TRUE TRUE FALSE Piromidinsäure Piromidinezuur Ácido piromídico Acido piromidico Acide piromidique Ácido piromídico Piromidinsyre Piromidinsyra Пиромидовая кислота
183 Pivampicillin FALSE TRUE TRUE FALSE Pivampicillin Pivampicilline Pivampicilina Pivampicillina Pivampicilline Pivampicilina Pivampicillin Pivampicillin Пивампициллин
184 Polymyxin B FALSE TRUE TRUE FALSE Polymyxin B Polymyxine B Polimixina B Polimixina B Polymyxine B Polimixina B Polymyxin B Polymyxin B Полимиксин В
185 Posaconazole FALSE TRUE TRUE FALSE Posaconazol Posaconazol Posaconazol Posaconazolo Posaconazole Posaconazole Posaconazol Posakonazol Посаконазол
186 Pristinamycin FALSE TRUE TRUE FALSE Pristinamycin Pristinamycine Pristinamicina Pristinamicina Pristinamycine Pristinamicina Pristinamycin Pristinamycin Пристинамицин
187 Procaine benzylpenicillin FALSE TRUE TRUE FALSE Procain-Benzylpenicillin Benzylpenicillineprocaine Bencilpenicilina procaína Procaina benzilpenicillina Procaïne benzylpénicilline Procaína benzilpenicilina Prokainbenzylpenicillin Prokainbenzylpenicillin Прокаин бензилпенициллин
188 Propicillin FALSE TRUE TRUE FALSE Propicillin Propicilline Propicilina Propicillina Propicilline Propicilina Propicillin Propicillin Пропициллин
189 Prulifloxacin FALSE TRUE TRUE FALSE Prulifloxacin Prulifloxacine Prulifloxacina Prulifloxacina Prulifloxacine Prulifloxacina Prulifloxacin Prulifloxacin Прулифлоксацин
190 Quinupristin/dalfopristin FALSE TRUE TRUE FALSE Quinupristin/Dalfopristin Quinupristine/dalfopristine Quinupristina/dalfopristina Quinupristina/dalfopristina Quinupristine/dalfopristine Quinupristin/dalfopristin Quinupristin/dalfopristin Quinupristin/dalfopristin Квинупристин/дальфопристин
191 Ribostamycin FALSE TRUE TRUE FALSE Ribostamycin Ribostamycine Ribostamicina Ribostamicina Ribostamycine Ribostamicina Ribostamycin Ribostamycin Рибостамицин
192 Rifabutin FALSE TRUE TRUE FALSE Rifabutin Rifabutine Rifabutina Rifabutina Rifabutine Rifabutin Rifabutin Rifabutin Рифабутин
193 Rifampicin FALSE TRUE TRUE FALSE Rifampicin Rifampicine Rifampicina Rifampicina Rifampicine Rifampicina Rifampicin Rifampicin Рифампицин
194 Rifampicin/pyrazinamide/ethambutol/isoniazid FALSE TRUE TRUE FALSE Rifampicin/Pyrazinamid/Ethambutol/Isoniazid Rifampicine/pyrazinamide/ethambutol/isoniazide Rifampicina/pirazinamida/etambutol/isoniazida Rifampicina/pirazinamide/etambutolo/isoniazide Rifampicine/pyrazinamide/éthambutol/isoniazide Rifampicina/pirazinamida/etambutol/isoniazida Rifampicin/pyrazinamid/ethambutol/isoniazid Rifampicin/pyrazinamid/ethambutol/isoniazid Рифампицин/пиразинамид/этамбутол/исониазид
195 Rifampicin/pyrazinamide/isoniazid FALSE TRUE TRUE FALSE Rifampicin/Pyrazinamid/Isoniazid Rifampicine/pyrazinamide/isoniazide Rifampicina/pirazinamida/isoniazida Rifampicina/pirazinamide/isoniazide Rifampicine/pyrazinamide/isoniazide Rifampicina/pirazinamida/isoniazida Rifampicin/pyrazinamid/isoniazid Rifampicin/pyrazinamid/isoniazid Рифампицин/пиразинамид/изониазид
196 Rifampicin/isoniazid FALSE TRUE TRUE FALSE Rifampicin/Isoniazid Rifampicine/isoniazide Rifampicina/isoniazida Rifampicina/isoniazide Rifampicine/isoniazide Rifampicina/isoniazida Rifampicin/isoniazid Rifampicin/isoniazid Рифампицин/изониазид
197 Rifamycin FALSE TRUE TRUE FALSE Rifamycin Rifamycine Rifamicina Rifamicina Rifamycine Rifamycin Rifamycin Rifamycin Рифамицин
198 Rifaximin FALSE TRUE TRUE FALSE Rifaximin Rifaximine Rifaximina Rifaximina Rifaximine Rifaximin Rifaximin Rifaximin Рифаксимин
199 Rokitamycin FALSE TRUE TRUE FALSE Rokitamycin Rokitamycine Rokitamicina Rokitamicina Rokitamycine Rokitamycin Rokitamycin Rokitamycin Рокитамицин
200 Rosoxacin FALSE TRUE TRUE FALSE Rosoxacin Rosoxacine Rosoxacina Rosoxacina Rosoxacine Rosoxacina Rosoxacin Rosoxacin Розоксацин
201 Roxithromycin FALSE TRUE TRUE FALSE Roxithromycin Roxitromycine Roxitromicina Roxitromicina Roxithromycine Roxitromicina Roxithromycin Roxitromycin Рокситромицин
202 Rufloxacin FALSE TRUE TRUE FALSE Rufloxacin Rufloxacine Rufloxacina Rufloxacina Rufloxacine Rufloxacin Rufloxacin Rufloxacin Руфлоксацин
203 Sisomicin FALSE TRUE TRUE FALSE Sisomicin Sisomicine Sisomicina Sisomicina Sisomicine Sisomicina Sisomicin Sisomicin Сизомицин
204 Sodium aminosalicylate FALSE TRUE TRUE FALSE Natrium-Aminosalicylat Aminosalicylzuur Aminosalicilato de sodio Sodio aminosalicilato Aminosalicylate de sodium Aminosalicilato de sódio Natriumaminosalicylat Natriumaminosalicylat Аминосалицилат натрия
205 Sparfloxacin FALSE TRUE TRUE FALSE Sparfloxacin Sparfloxacine Esparfloxacina Sparfloxacina Sparfloxacine Sparfloxacin Sparfloxacin Sparfloxacin Спарфлоксацин
206 Spectinomycin FALSE TRUE TRUE FALSE Spectinomycin Spectinomycine Espectinomicina Spectinomycin Spectinomycine Spectinomycin Spectinomycin Spektinomycin Спектиномицин
207 Spiramycin FALSE TRUE TRUE FALSE Spiramycin Spiramycine Espiramicina Spiramicina Spiramycine Spiramycin Spiramycin Spiramycin Спирамицин
208 Spiramycin/metronidazole FALSE TRUE TRUE FALSE Spiramycin/Metronidazol Spiramycine/metronidazol Espiramicina/metronidazol Spiramicina/metronidazolo Spiramycine/métronidazole Spiramycin/metronidazol Spiramycin/metronidazol Spiramycin/metronidazol Спирамицин/метронидазол
209 Staphylococcus immunoglobulin FALSE TRUE TRUE FALSE Staphylococcus-Immunoglobulin Stafylokokkenimmunoglobuline Inmunoglobulina estafilocócica Immunoglobulina per stafilococco Immunoglobuline staphylococcique Imunoglobulina de Staphylococcus Stafylokok-immunglobulin Immunoglobulin mot stafylokocker Стафилококковый иммуноглобулин
210 Streptoduocin FALSE TRUE TRUE FALSE Streptoduocin Streptoduocine Estreptoduocina Streptoduocin Streptoduocine Estreptoduocina Streptoduocin Streptoduocin Стрептодуоцин
211 Streptomycin FALSE TRUE TRUE FALSE Streptomycin Streptomycine Estreptomicina Streptomicina Streptomycine Streptomycin Streptomycin Streptomycin Стрептомицин
212 Streptomycin/isoniazid FALSE TRUE TRUE FALSE Streptomycin/Isoniazid Streptomycine/isoniazide Estreptomicina/isoniazida Streptomicina/isoniazide Streptomycine/isoniazide Streptomicina/isoniazida Streptomycin/isoniazid Streptomycin/isoniazid Стрептомицин/изониазид
213 Sulbenicillin FALSE TRUE TRUE FALSE Sulbenicillin Sulbenicilline Sulbenicilina Sulbenicillina Sulbenicilline Sulbenicilina Sulbenicillin Sulbenicillin Сульбенициллин
214 Sulfadiazine/tetroxoprim FALSE TRUE TRUE FALSE Sulfadiazin/Tetroxoprim Sulfadiazine/tetroxoprim Sulfadiazina/tetroxoprim Sulfadiazina/tetroxoprim Sulfadiazine/tetroxoprime Sulfadiazina/tetroxoprim Sulfadiazin/tetroxoprim Sulfadiazin/tetroxoprim Сульфадиазин/тетроксоприм
215 Sulfadiazine/trimethoprim FALSE TRUE TRUE FALSE Sulfadiazin/Trimethoprim Sulfadiazine/trimethoprim Sulfadiazina/trimetoprima Sulfadiazina/trimetoprim Sulfadiazine/triméthoprime Sulfadiazina/trimethoprim Sulfadiazin/trimethoprim Sulfadiazin/trimetoprim Сульфадиазин/триметоприм
216 Sulfadimidine/trimethoprim FALSE TRUE TRUE FALSE Sulfadimidin/Trimethoprim Sulfadimidine/trimethoprim Sulfadimidina/trimetoprima Sulfadimidina/trimetoprim Sulfadimidine/triméthoprime Sulfadimidina/trimethoprim Sulfadimidin/trimethoprim Sulfadimidin/trimetoprim Сульфадимидин/триметоприм
217 Sulfafurazole FALSE TRUE TRUE FALSE Sulfafurazol Sulfafurazol Sulfafurazol Sulfafurazolo Sulfafurazole Sulfafurazole Sulfafurazol Sulfafurazol Сульфафуразол
218 Sulfaisodimidine FALSE TRUE TRUE FALSE Sulfaisodimidin Sulfisomidine Sulfaisodimidina Sulfaisodimidina Sulfaisodimidine Sulfaisodimidina Sulfaisodimidin Sulfaisodimidin Сульфаизодимидин
219 Sulfalene FALSE TRUE TRUE FALSE Sulfalene Sulfaleen Sulfaleno Sulfalene Sulfalène Sulfaleno Sulfalen Sulfen Сульфален
220 Sulfamazone FALSE TRUE TRUE FALSE Sulfamazon Sulfamazon Sulfamazona Sulfamazone Sulfamazone Sulfamazona Sulfamazon Sulfamazon Сульфамазон
221 Sulfamerazine/trimethoprim FALSE TRUE TRUE FALSE Sulfamerazin/Trimethoprim Sulfamerazine/trimethoprim Sulfamerazina/trimetoprima Sulfamerazina/trimetoprim Sulfamérazine/triméthoprime Sulfamerazina/trimethoprim Sulfamerazin/trimethoprim Sulfamerazin/trimetoprim Сульфамеразин/триметоприм
222 Sulfamethizole FALSE TRUE TRUE FALSE Sulfamethizol Sulfamethizol Sulfametozol Sulfamethizolo Sulfaméthizole Sulfametizole Sulfamethizol Sulfamethizol Сульфаметизол
223 Sulfamethoxazole FALSE TRUE TRUE FALSE Sulfamethoxazol Sulfamethoxazol Sulfametoxazol Sulfametossazolo Sulfaméthoxazole Sulfamethoxazole Sulfamethoxazol Sulfametoxazol Сульфаметоксазол
224 Sulfamethoxazole/trimethoprim FALSE TRUE TRUE FALSE Sulfamethoxazol/Trimethoprim Sulfamethoxazol/trimethoprim Sulfametoxazol/trimetoprima Sulfametossazolo/trimetoprim Sulfaméthoxazole/triméthoprime Sulfametoxazol/trimethoprim Sulfamethoxazol/trimethoprim Sulfametoxazol/trimetoprim Сульфаметоксазол/триметоприм
225 Sulfametoxydiazine FALSE TRUE TRUE FALSE Sulfametoxydiazin Sulfamethoxydiazine Sulfametoxidiazina Sulfametoxydiazine Sulfamétoxydiazine Sulfametoxidiazina Sulfametoxydiazin Sulfametoxydiazin Сульфаметоксидиазин
226 Sulfametrole/trimethoprim FALSE TRUE TRUE FALSE Sulfametrole/Trimethoprim Sulfametrol/trimethoprim Sulfametrol/trimetoprima Sulfametrole/trimetoprim Sulfamétrole/triméthoprime Sulfametrole/trimethoprim Sulfametrol/trimethoprim Sulfametrol/trimetoprim Сульфаметрол/триметоприм
227 Sulfamoxole FALSE TRUE TRUE FALSE Sulfamoxol Sulfamoxol Sulfamoxole Sulfamoxolo Sulfamoxole Sulfamoxole Sulfamoxol Sulfamoxol Сульфамоксол
228 Sulfamoxole/trimethoprim FALSE TRUE TRUE FALSE Sulfamoxol/Trimethoprim Sulfamoxol/trimethoprim Sulfamoxol/trimetoprima Sulfamoxolo/trimetoprim Sulfamoxole/triméthoprime Sulfamoxole/trimethoprim Sulfamoxol/trimethoprim Sulfamoxol/trimetoprim Сульфамоксол/триметоприм
229 Sulfaperin FALSE TRUE TRUE FALSE Sulfaperin Sulfaperine Sulfametoxazol Sulfaperin Sulfapérine Sulfaperin Sulfaperin Sulfaperin Сульфаперин
230 Sulfaphenazole FALSE TRUE TRUE FALSE Sulfaphenazol Sulfafenazol Sulfafenazol Sulfafenazolo Sulfaphénazole Sulfafenazol Sulfaphenazol Sulfafenazol Сульфафеназол
231 Sulfathiazole FALSE TRUE TRUE FALSE Sulfathiazol Sulfathiazol Sulfatiazol Sulfathiazole Sulfathiazole Sulfatazol Sulfathiazol Sulfathiazol Сульфатиазол
232 Sulfathiourea FALSE TRUE TRUE FALSE Sulfathioharnstoff Sulfathioureum Sulfathiourea Sulfathiourea Sulfathiourée Sulfathiourea Sulfathiourea Sulfatiourea Сульфатиомочевина
233 Sultamicillin FALSE TRUE TRUE FALSE Sultamicillin Sultamicilline Sultamicilina Sultamicillina Sultamicilline Sultamicillin Sultamicillin Sultamicillin Сультамициллин
234 Talampicillin FALSE TRUE TRUE FALSE Talampicillin Talampicilline Talampicilina Talampicillina Talampicilline Talampicilina Talampicillin Talampicillin Талампициллин
235 Teicoplanin FALSE TRUE TRUE FALSE Teicoplanin Teicoplanine Teicoplanina Teicoplanina Teicoplanine Teicoplanin Teicoplanin Teicoplanin Тейкопланин
236 Telithromycin FALSE TRUE TRUE FALSE Telithromycin Telitromycine Telitromicina Telitromicina Télithromycine Telitromicina Telithromycin Telitromycin Телитромицин
237 Temafloxacin FALSE TRUE TRUE FALSE Temafloxacin Temafloxacine Temafloxacina Temafloxacina Temafloxacine Temafloxacin Temafloxacin Temafloxacin Темафлоксацин
238 Temocillin FALSE TRUE TRUE FALSE Temocillin Temocilline Temocilina Temocillina Temocillin Temocillin Temocillin Temocillin Темоциллин
239 Tenofovir disoproxil FALSE TRUE TRUE FALSE Tenofovir Disoproxil Tenofovir Tenofovir disoproxil Tenofovir disoproxil Tenofovir disoproxil Tenofovir disoproxil Tenofovir disoproxil Tenofovir disoproxil Тенофовир дизопроксил
240 Terizidone FALSE TRUE TRUE FALSE Terizidon Terizidon Terizidona Terizidone Terizidone Terizidone Terizidon Terizidon Теризидон
241 Thiamphenicol FALSE TRUE TRUE FALSE Thiamphenicol Thiamfenicol Tiamfenicol Tiamfenicolo Thiamphénicol Tiamfenicol Thiamphenicol Tiamfenikol Тиамфеникол
242 Thioacetazone/isoniazid FALSE TRUE TRUE FALSE Thioacetazon/Isoniazid Thioacetazon/isoniazide Tioacetazona/isoniazida Tioacetazone/isoniazide Thioacétazone/isoniazide Thioacetazone/isoniazid Thioacetazon/isoniazid Thioacetazon/isoniazid Тиоацетазон/изониазид
243 Ticarcillin FALSE TRUE TRUE FALSE Ticarcillin Ticarcilline Ticarcilina Ticarcillina Ticarcilline Ticarcilina Ticarcillin Ticarcillin Тикарциллин
244 Ticarcillin/beta-lactamase inhibitor FALSE TRUE TRUE FALSE Ticarcillin/Beta-Lactamase-Hemmer Ticarcilline/enzymremmer Ticarcilina/inhib. de la betalactamasa Ticarcillina/inib. d. beta-lattamasi Ticarcilline/inhib. de bêta-lactamase Ticarcilina/inibid. da beta-lactamase Ticarcillin/beta-lactamasehæmmer Ticarcillin/beta-laktamashämmare Тикарциллин/ингибитор бета-лактамазы
245 Ticarcillin/clavulanic acid FALSE TRUE TRUE FALSE Ticarcillin/Clavulansäure Ticarcilline/clavulaanzuur Ticarcilina/ácido clavulánico Ticarcillina/acido clavulanico Ticarcilline/acide clavulanique Ticarcilina/ácido clavulanico Ticarcillin/clavulansyre Ticarcillin/clavulansyra Тикарциллин/клавулановая кислота
246 Tinidazole FALSE TRUE TRUE FALSE Tinidazol Tinidazol Tinidazol Tinidazolo Tinidazole Tinidazole Tinidazol Tinidazol Тинидазол
247 Tobramycin FALSE TRUE TRUE FALSE Tobramycin Tobramycine Tobramicina Tobramicina Tobramycine Tobramycin Tobramycin Tobramycin Тобрамицин
248 Trimethoprim/sulfamethoxazole FALSE TRUE TRUE FALSE Trimethoprim/Sulfamethoxazol Cotrimoxazol Trimetoprima/sulfametoxazol Trimetoprim/sulfametossazolo Triméthoprime/sulfaméthoxazole Trimethoprim/sulfametoxazol Trimethoprim/sulfamethoxazol Trimetoprim/sulfametoxazol Триметоприм/сульфаметоксазол
249 Troleandomycin FALSE TRUE TRUE FALSE Troleandomycin Troleandomycine Troleandomicina Troleandomicina Troleandomycine Troleandomicina Troleandomycin Troleandomycin Тролеандомицин
250 Trovafloxacin FALSE TRUE TRUE FALSE Trovafloxacin Trovafloxacine Trovafloxacina Trovafloxacin Trovafloxacine Trovafloxacin Trovafloxacin Trovafloxacin Тровафлоксацин
251 Vancomycin FALSE TRUE TRUE FALSE Vancomycin Vancomycine Vancomicina Vancomicina Vancomycine Vancomycin Vancomycin Vancomycin Ванкомицин
252 Voriconazole FALSE TRUE TRUE FALSE Voriconazol Voriconazol Voriconazol Voriconazolo Voriconazole Voriconazol Voriconazol Vorikonazol Вориконазол
253 Aminoglycosides FALSE TRUE TRUE FALSE Aminoglykoside Aminoglycosiden Aminoglucósidos Aminoglicosidi Aminoglycosides Aminoglycosides Aminoglykosider Aminoglykosider Аминогликозиды
254 Amphenicols FALSE TRUE TRUE FALSE Amphenicole Amfenicolen Anfenicoles Amphenicols Amphénicols Anfenicóis Amphenicoler Amfenikoler Амфениколы
255 Antifungals/antimycotics FALSE TRUE TRUE FALSE Antimykotika/Antimykotika Antifungica/antimycotica Antifúngicos/antimicóticos Antifungini/antimicotici Antifongiques/antimycotiques Antifúngicos/antimicóticos Antimykotika/antimykotika Antimykotika/antimykotika Противогрибковые препараты/антимикотики
256 Antimycobacterials FALSE TRUE TRUE FALSE Antimykobakterielle Mittel Antimycobacteriele middelen Antimicrobianos Antimicobatterici Antimycobactériens Antimycobacterials Antimycobakterier Antimykobakterier Антимикобактериальные препараты
257 Beta-lactams/penicillins FALSE TRUE TRUE FALSE Beta-Lactame/Penicilline Beta-lactams/penicillines Beta-lactámicos/penicilinas Beta-lattami/penicilline Bêta-lactamines/pénicillines Beta-lactâmicas/penicilinas Beta-lactamer/penicilliner Beta-laktamer/penicilliner Бета-лактамы/пенициллины
258 Cephalosporins (1st gen.) FALSE TRUE TRUE FALSE Cephalosporine (1. Gen.) Cefalosporines (1e gen.) Cefalosporinas (1er gen.) Cefalosporine (1° gen.) Céphalosporines (1ère génération) Cefalosporinas (1º género) Cefalosporiner (1. gen.) Kefalosporiner (första gen.) Цефалоспорины (1-го пок.)
259 Cephalosporins (2nd gen.) FALSE TRUE TRUE FALSE Cephalosporine (2. Gen.) Cefalosporines (2e gen.) Cefalosporinas (2do gen.) Cefalosporine (2° gen.) Céphalosporines (2ème génération) Cefalosporinas (2ª gen.) Cefalosporiner (2. gen.) Kefalosporiner (andra gen.) Цефалоспорины (2-го пок.)
260 Cephalosporins (3rd gen.) FALSE TRUE TRUE FALSE Cephalosporine (3. Gen.) Cefalosporines (3e gen.) Cefalosporinas (3er gen.) Cefalosporine (3° gen.) Céphalosporines (3ème génération) Cefalosporinas (3ª gen.) Cefalosporiner (3. gen.) Kefalosporiner (tredje gen.) Цефалоспорины (3-го пок.)
261 Cephalosporins (4th gen.) FALSE TRUE TRUE FALSE Cephalosporine (4. Gen.) Cefalosporines (4e gen.) Cefalosporinas (4ª gen.) Cefalosporine (4° gen.) Céphalosporines (4ème génération) Cefalosporinas (4.ª gen.) Cefalosporiner (4. gen.) Kefalosporiner (4:e gen.) Цефалоспорины (4-го пок.)
262 Cephalosporins (5th gen.) FALSE TRUE TRUE FALSE Cephalosporine (5. Gen.) Cefalosporines (5e gen.) Cefalosporinas (5º gen.) Cefalosporine (5° gen.) Céphalosporines (5e gén.) Cefalosporinas (5.ª gen.) Cefalosporiner (5. gen.) Kefalosporiner (5:e gen.) Цефалоспорины (5-го пок.)
263 Cephalosporins (unclassified gen.) FALSE TRUE TRUE FALSE Cephalosporine (unklassifiziert) Cefalosporines (ongeclassificeerd) Cefalosporinas (gen. no clasificado) Cefalosporine (gen. non classificato) Céphalosporines (genre non classifié) Cefalosporinas (não classificado gen.) Cefalosporiner (uklassificeret gen.) Kefalosporiner (oklassificerad gen.) Цефалоспорины (неклассифицированный род)
264 Cephalosporins FALSE TRUE TRUE FALSE Cephalosporine Cefalosporines Cefalosporinas Cefalosporine Céphalosporines Cefalosporinas Cefalosporiner Kefalosporiner Цефалоспорины
265 Glycopeptides FALSE TRUE TRUE FALSE Glykopeptide Glycopeptiden Glicopéptidos Glicopeptidi Glycopeptides Glycopeptides Glykopeptider Glykopeptider Гликопептиды
266 Macrolides/lincosamides FALSE TRUE TRUE FALSE Makrolide/Linkosamide Macroliden/lincosamiden Macrólidos/lincosamidas Macrolidi/lincosamidi Macrolides/lincosamides Macrolides/lincosamidas Makrolider/lincosamider Makrolider/linkosamider Макролиды/линкозамиды
267 Other antibacterials FALSE TRUE TRUE FALSE Andere Antibiotika Overige antibiotica Otros antibacterianos Altri antibatterici Autres antibactériens Outros antibacterianos Andre antibakterielle stoffer Andra antibakteriella medel Другие антибактериальные препараты
268 Polymyxins FALSE TRUE TRUE FALSE Polymyxine Polymyxines Polimixinas Polimixine Polymyxines Polimixinas Polymyxiner Polymyxiner Полимиксины
269 Quinolones FALSE TRUE TRUE FALSE Quinolone Quinolonen Quinolonas Chinoloni Quinolones Quinolones Kinoloner Kinoloner Хинолоны

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<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="https://msberends.github.io/AMR/index.html">AMR (for R)</a> <a class="navbar-link" href="https://msberends.github.io/AMR/index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9064</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9067</span>
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<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="index.html">AMR (for R)</a> <a class="navbar-link" href="index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9064</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9067</span>
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<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a> <a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9066</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9067</span>
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</div> </div>
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<div class="page-header toc-ignore"> <div class="page-header toc-ignore">
<h1 data-toc-skip>Data sets for download / own use</h1> <h1 data-toc-skip>Data sets for download / own use</h1>
<h4 data-toc-skip class="date">11 December 2021</h4> <h4 data-toc-skip class="date">12 December 2021</h4>
<small class="dont-index">Source: <a href="https://github.com/msberends/AMR/blob/HEAD/vignettes/datasets.Rmd" class="external-link"><code>vignettes/datasets.Rmd</code></a></small> <small class="dont-index">Source: <a href="https://github.com/msberends/AMR/blob/HEAD/vignettes/datasets.Rmd" class="external-link"><code>vignettes/datasets.Rmd</code></a></small>
<div class="hidden name"><code>datasets.Rmd</code></div> <div class="hidden name"><code>datasets.Rmd</code></div>
@ -790,7 +790,7 @@ If you are reading this page from within R, please <a href="https://msberends.gi
</h2> </h2>
<p>A data set with 134,956 rows and 2 columns, containing the following column names:<br><em>microorganism</em> and <em>antibiotic</em>.</p> <p>A data set with 134,956 rows and 2 columns, containing the following column names:<br><em>microorganism</em> and <em>antibiotic</em>.</p>
<p>This data set is in R available as <code>intrinsic_resistant</code>, after you load the <code>AMR</code> package.</p> <p>This data set is in R available as <code>intrinsic_resistant</code>, after you load the <code>AMR</code> package.</p>
<p>It was last updated on 11 December 2021 11:49:52 UTC. Find more info about the structure of this data set <a href="https://msberends.github.io/AMR/reference/intrinsic_resistant.html">here</a>.</p> <p>It was last updated on 11 December 2021 14:59:42 UTC. Find more info about the structure of this data set <a href="https://msberends.github.io/AMR/reference/intrinsic_resistant.html">here</a>.</p>
<p><strong>Direct download links:</strong></p> <p><strong>Direct download links:</strong></p>
<ul> <ul>
<li>Download as <a href="https://github.com/msberends/AMR/raw/main/data-raw/../data-raw/intrinsic_resistant.rds" class="external-link">R file</a> (78 kB)<br> <li>Download as <a href="https://github.com/msberends/AMR/raw/main/data-raw/../data-raw/intrinsic_resistant.rds" class="external-link">R file</a> (78 kB)<br>

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</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a> <a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9064</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9067</span>
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</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a> <a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9064</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9067</span>
</span> </span>
</div> </div>
@ -201,7 +201,8 @@
<p>Note: to keep the package size as small as possible, we only included this vignette on CRAN. You can read more vignettes on our website about how to conduct AMR data analysis, determine MDRO’s, find explanation of EUCAST rules, and much more: <a href="https://msberends.github.io/AMR/articles/" class="uri">https://msberends.github.io/AMR/articles/</a>.</p> <p>Note: to keep the package size as small as possible, we only included this vignette on CRAN. You can read more vignettes on our website about how to conduct AMR data analysis, determine MDRO’s, find explanation of EUCAST rules, and much more: <a href="https://msberends.github.io/AMR/articles/" class="uri">https://msberends.github.io/AMR/articles/</a>.</p>
<hr> <hr>
<p><code>AMR</code> is a free, open-source and independent R package (see <a href="https://msberends.github.io/AMR/#copyright">Copyright</a>) to simplify the analysis and prediction of Antimicrobial Resistance (AMR) and to work with microbial and antimicrobial data and properties, by using evidence-based methods. <strong>Our aim is to provide a standard</strong> for clean and reproducible antimicrobial resistance data analysis, that can therefore empower epidemiological analyses to continuously enable surveillance and treatment evaluation in any setting.</p> <p><code>AMR</code> is a free, open-source and independent R package (see <a href="https://msberends.github.io/AMR/#copyright">Copyright</a>) to simplify the analysis and prediction of Antimicrobial Resistance (AMR) and to work with microbial and antimicrobial data and properties, by using evidence-based methods. <strong>Our aim is to provide a standard</strong> for clean and reproducible antimicrobial resistance data analysis, that can therefore empower epidemiological analyses to continuously enable surveillance and treatment evaluation in any setting.</p>
<p>After installing this package, R knows ~71,000 distinct microbial species and all ~560 antibiotic, antimycotic and antiviral drugs by name and code (including ATC, EARS-Net, PubChem, LOINC and SNOMED CT), and knows all about valid R/SI and MIC values. It supports any data format, including WHONET/EARS-Net data. Antimicrobial names and group names are available in Danish, Dutch, English, French, German, Italian, Portuguese and Spanish.</p> <p>After installing this package, R knows ~71,000 distinct microbial species and all ~560 antibiotic, antimycotic and antiviral drugs by name and code (including ATC, EARS-Net, PubChem, LOINC and SNOMED CT), and knows all about valid R/SI and MIC values. It supports any data format, including WHONET/EARS-Net data.</p>
<p>The <code>AMR</code> package is available in Danish, Dutch, English, French, German, Italian, Portuguese, Russian, Spanish and Swedish. Antimicrobial drug (group) names and colloquial microorganism names are provided in these languages.</p>
<p>This package is fully independent of any other R package and works on Windows, macOS and Linux with all versions of R since R-3.0 (April 2013). <strong>It was designed to work in any setting, including those with very limited resources</strong>. Since its first public release in early 2018, this package has been downloaded from more than 175 countries.</p> <p>This package is fully independent of any other R package and works on Windows, macOS and Linux with all versions of R since R-3.0 (April 2013). <strong>It was designed to work in any setting, including those with very limited resources</strong>. Since its first public release in early 2018, this package has been downloaded from more than 175 countries.</p>
<p>This package can be used for:</p> <p>This package can be used for:</p>
<ul> <ul>

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</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="index.html">AMR (for R)</a> <a class="navbar-link" href="index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9064</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9067</span>
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</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="index.html">AMR (for R)</a> <a class="navbar-link" href="index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9064</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9067</span>
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<code>AMR</code> (for R) <img src="./logo.png" align="right" height="120px"><a class="anchor" aria-label="anchor" href="#amr-for-r-"></a> <code>AMR</code> (for R) <img src="./logo.png" align="right" height="120px"><a class="anchor" aria-label="anchor" href="#amr-for-r-"></a>
</h1></div> </h1></div>
<blockquote> <blockquote>
<p>Update: The latest <a href="https://www.eucast.org/expert_rules_and_intrinsic_resistance/" class="external-link">EUCAST guideline for intrinsic resistance</a> (v3.3, October 2021) is now supported, and our taxonomy tables have been updated as well (LPSN, 5 October 2021). <strong>A new version will be released after the <a href="https://www.eucast.org/clinical_breakpoints/" class="external-link">EUCAST guideline for clinical breakpoints</a> (v12.0, likely January 2022) are implemented, to be expected shortly after the official guideline release.</strong></p> <p>Update: The latest <a href="https://www.eucast.org/expert_rules_and_intrinsic_resistance/" class="external-link">EUCAST guideline for intrinsic resistance</a> (v3.3, October 2021) is now supported, and our taxonomy tables have been updated as well (LPSN, 5 October 2021).</p>
<p><strong>A new version will be released after the <a href="https://www.eucast.org/clinical_breakpoints/" class="external-link">EUCAST guideline for clinical breakpoints</a> (v12.0, likely January 2022) are implemented, to be expected shortly after the official guideline release.</strong></p>
</blockquote> </blockquote>
<div class="section level3"> <div class="section level3">
<h3 id="what-is-amr-for-r">What is <code>AMR</code> (for R)?<a class="anchor" aria-label="anchor" href="#what-is-amr-for-r"></a> <h3 id="what-is-amr-for-r">What is <code>AMR</code> (for R)?<a class="anchor" aria-label="anchor" href="#what-is-amr-for-r"></a>
</h3> </h3>
<p><code>AMR</code> is a free, open-source and independent <a href="https://www.r-project.org" class="external-link">R package</a> (see <a href="#copyright">Copyright</a>) to simplify the analysis and prediction of Antimicrobial Resistance (AMR) and to work with microbial and antimicrobial data and properties, by using evidence-based methods. <strong>Our aim is to provide a standard</strong> for clean and reproducible AMR data analysis, that can therefore empower epidemiological analyses to continuously enable surveillance and treatment evaluation in any setting.</p> <p><code>AMR</code> is a free, open-source and independent <a href="https://www.r-project.org" class="external-link">R package</a> (see <a href="#copyright">Copyright</a>) to simplify the analysis and prediction of Antimicrobial Resistance (AMR) and to work with microbial and antimicrobial data and properties, by using evidence-based methods. <strong>Our aim is to provide a standard</strong> for clean and reproducible AMR data analysis, that can therefore empower epidemiological analyses to continuously enable surveillance and treatment evaluation in any setting.</p>
<p>After installing this package, R knows <a href="./reference/microorganisms.html"><strong>~71,000 distinct microbial species</strong></a> and all <a href="./reference/antibiotics.html"><strong>~560 antibiotic, antimycotic and antiviral drugs</strong></a> by name and code (including ATC, EARS-Net, PubChem, LOINC and SNOMED CT), and knows all about valid R/SI and MIC values. It supports any data format, including WHONET/EARS-Net data. Antimicrobial names and group names are available in Danish, Dutch, English, French, German, Italian, Portuguese and Spanish.</p> <p>After installing this package, R knows <a href="./reference/microorganisms.html"><strong>~71,000 distinct microbial species</strong></a> and all <a href="./reference/antibiotics.html"><strong>~560 antibiotic, antimycotic and antiviral drugs</strong></a> by name and code (including ATC, EARS-Net, PubChem, LOINC and SNOMED CT), and knows all about valid R/SI and MIC values. It supports any data format, including WHONET/EARS-Net data.</p>
<p>The <code>AMR</code> package is available in <img src="lang_da.svg" style="height: 11px !important; vertical-align: initial !important;"> Danish, <img src="lang_nl.svg" style="height: 11px !important; vertical-align: initial !important;"> Dutch, <img src="lang_en.svg" style="height: 11px !important; vertical-align: initial !important;"> English, <img src="lang_fr.svg" style="height: 11px !important; vertical-align: initial !important;"> French, <img src="lang_de.svg" style="height: 11px !important; vertical-align: initial !important;"> German, <img src="lang_it.svg" style="height: 11px !important; vertical-align: initial !important;"> Italian, <img src="lang_pt.svg" style="height: 11px !important; vertical-align: initial !important;"> Portuguese, <img src="lang_ru.svg" style="height: 11px !important; vertical-align: initial !important;"> Russian, <img src="lang_es.svg" style="height: 11px !important; vertical-align: initial !important;"> Spanish and <img src="lang_sv.svg" style="height: 11px !important; vertical-align: initial !important;"> Swedish. Antimicrobial drug (group) names and colloquial microorganism names are provided in these languages.</p>
<p>This package is <a href="https://en.wikipedia.org/wiki/Dependency_hell" class="external-link">fully independent of any other R package</a> and works on Windows, macOS and Linux with all versions of R since R-3.0 (April 2013). <strong>It was designed to work in any setting, including those with very limited resources</strong>. It was created for both routine data analysis and academic research at the Faculty of Medical Sciences of the <a href="https://www.rug.nl" class="external-link">University of Groningen</a>, in collaboration with non-profit organisations <a href="https://www.certe.nl" class="external-link">Certe Medical Diagnostics and Advice Foundation</a> and <a href="https://www.umcg.nl" class="external-link">University Medical Center Groningen</a>. This R package formed the basis of two PhD theses (<a href="https://doi.org/10.33612/diss.177417131" class="external-link">DOI 10.33612/diss.177417131</a> and <a href="https://doi.org/10.33612/diss.192486375" class="external-link">DOI 10.33612/diss.192486375</a>) but is <a href="./news">actively and durably maintained</a> by two public healthcare organisations in the Netherlands.</p> <p>This package is <a href="https://en.wikipedia.org/wiki/Dependency_hell" class="external-link">fully independent of any other R package</a> and works on Windows, macOS and Linux with all versions of R since R-3.0 (April 2013). <strong>It was designed to work in any setting, including those with very limited resources</strong>. It was created for both routine data analysis and academic research at the Faculty of Medical Sciences of the <a href="https://www.rug.nl" class="external-link">University of Groningen</a>, in collaboration with non-profit organisations <a href="https://www.certe.nl" class="external-link">Certe Medical Diagnostics and Advice Foundation</a> and <a href="https://www.umcg.nl" class="external-link">University Medical Center Groningen</a>. This R package formed the basis of two PhD theses (<a href="https://doi.org/10.33612/diss.177417131" class="external-link">DOI 10.33612/diss.177417131</a> and <a href="https://doi.org/10.33612/diss.192486375" class="external-link">DOI 10.33612/diss.192486375</a>) but is <a href="./news">actively and durably maintained</a> by two public healthcare organisations in the Netherlands.</p>
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<p> <p>

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@ -17,7 +17,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a> <a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9066</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9067</span>
</span> </span>
</div> </div>
@ -157,21 +157,22 @@
</div> </div>
<div class="section level2"> <div class="section level2">
<h2 class="page-header" data-toc-text="1.7.1.9066" id="amr-1719066"> <h2 class="page-header" data-toc-text="1.7.1.9067" id="amr-1719067">
<code>AMR</code> 1.7.1.9066<a class="anchor" aria-label="anchor" href="#amr-1719066"></a></h2> <code>AMR</code> 1.7.1.9067<a class="anchor" aria-label="anchor" href="#amr-1719067"></a></h2>
<div class="section level3"> <div class="section level3">
<h3 id="last-updated-december-1-7-1-9066"><small>Last updated: 11 December 2021</small><a class="anchor" aria-label="anchor" href="#last-updated-december-1-7-1-9066"></a></h3> <h3 id="last-updated-december-1-7-1-9067"><small>Last updated: 12 December 2021</small><a class="anchor" aria-label="anchor" href="#last-updated-december-1-7-1-9067"></a></h3>
<div class="section level4"> <div class="section level4">
<h4 id="breaking-changes-1-7-1-9066">Breaking changes<a class="anchor" aria-label="anchor" href="#breaking-changes-1-7-1-9066"></a></h4> <h4 id="breaking-changes-1-7-1-9067">Breaking changes<a class="anchor" aria-label="anchor" href="#breaking-changes-1-7-1-9067"></a></h4>
<ul><li>Removed <code>p_symbol()</code> and all <code>filter_*()</code> functions (except for <code><a href="../reference/first_isolate.html">filter_first_isolate()</a></code>), which were all deprecated in a previous package version</li> <ul><li>Removed <code>p_symbol()</code> and all <code>filter_*()</code> functions (except for <code><a href="../reference/first_isolate.html">filter_first_isolate()</a></code>), which were all deprecated in a previous package version</li>
<li>Removed the <code>key_antibiotics()</code> and <code>key_antibiotics_equal()</code> functions, which were deprecated and superseded by <code><a href="../reference/key_antimicrobials.html">key_antimicrobials()</a></code> and <code><a href="../reference/key_antimicrobials.html">antimicrobials_equal()</a></code> <li>Removed the <code>key_antibiotics()</code> and <code>key_antibiotics_equal()</code> functions, which were deprecated and superseded by <code><a href="../reference/key_antimicrobials.html">key_antimicrobials()</a></code> and <code><a href="../reference/key_antimicrobials.html">antimicrobials_equal()</a></code>
</li> </li>
<li>Removed all previously implemented <code><a href="https://ggplot2.tidyverse.org/reference/ggplot.html" class="external-link">ggplot2::ggplot()</a></code> generics for classes <code>&lt;mic&gt;</code>, <code>&lt;disk&gt;</code>, <code>&lt;rsi&gt;</code> and <code>&lt;resistance_predict&gt;</code> as they did not follow the <code>ggplot2</code> logic. They were replaced with <code><a href="https://ggplot2.tidyverse.org/reference/autoplot.html" class="external-link">ggplot2::autoplot()</a></code> generics.</li> <li>Removed all previously implemented <code><a href="https://ggplot2.tidyverse.org/reference/ggplot.html" class="external-link">ggplot2::ggplot()</a></code> generics for classes <code>&lt;mic&gt;</code>, <code>&lt;disk&gt;</code>, <code>&lt;rsi&gt;</code> and <code>&lt;resistance_predict&gt;</code> as they did not follow the <code>ggplot2</code> logic. They were replaced with <code><a href="https://ggplot2.tidyverse.org/reference/autoplot.html" class="external-link">ggplot2::autoplot()</a></code> generics.</li>
<li>Renamed function <code>get_locale()</code> to <code><a href="../reference/translate.html">get_AMR_locale()</a></code> to prevent conflicts with other packages</li>
</ul></div> </ul></div>
<div class="section level4"> <div class="section level4">
<h4 id="new-1-7-1-9066">New<a class="anchor" aria-label="anchor" href="#new-1-7-1-9066"></a></h4> <h4 id="new-1-7-1-9067">New<a class="anchor" aria-label="anchor" href="#new-1-7-1-9067"></a></h4>
<ul><li><p>Support for EUCAST Intrinsic Resistance and Unusual Phenotypes v3.3 (October 2021). This is now the default EUCAST guideline in the package (all older guidelines are still available) for <code><a href="../reference/eucast_rules.html">eucast_rules()</a></code>, <code>mo_intrinsic_resistant()</code> and <code><a href="../reference/mdro.html">mdro()</a></code>. The <code>intrinsic_resistant</code> data set was also updated accordingly.</p></li> <ul><li><p>Support for EUCAST Intrinsic Resistance and Unusual Phenotypes v3.3 (October 2021). This is now the default EUCAST guideline in the package (all older guidelines are still available) for <code><a href="../reference/eucast_rules.html">eucast_rules()</a></code>, <code>mo_intrinsic_resistant()</code> and <code><a href="../reference/mdro.html">mdro()</a></code>. The <code>intrinsic_resistant</code> data set was also updated accordingly.</p></li>
<li><p>Support for Danish, and also added missing translations of all antimicrobial drugs in Italian, French and Portuguese</p></li> <li><p>Support for all antimicrobial drug (group) names and colloquial microorganism names in Danish, Dutch, English, French, German, Italian, Portuguese, Russian, Spanish and Swedish</p></li>
<li> <li>
<p>Function <code><a href="../reference/ab_property.html">set_ab_names()</a></code> to rename data set columns that resemble antimicrobial drugs. This allows for quickly renaming columns to official names, ATC codes, etc. Its second argument can be a tidyverse way of selecting:</p> <p>Function <code><a href="../reference/ab_property.html">set_ab_names()</a></code> to rename data set columns that resemble antimicrobial drugs. This allows for quickly renaming columns to official names, ATC codes, etc. Its second argument can be a tidyverse way of selecting:</p>
<div class="sourceCode" id="cb1"><pre class="downlit sourceCode r"> <div class="sourceCode" id="cb1"><pre class="downlit sourceCode r">
@ -183,7 +184,7 @@
<li><p>Function <code><a href="../reference/ab_property.html">ab_ddd_units()</a></code> to get units of DDDs (daily defined doses), deprecating the use of <code>ab_ddd(..., units = TRUE)</code> to be more consistent in data types of function output</p></li> <li><p>Function <code><a href="../reference/ab_property.html">ab_ddd_units()</a></code> to get units of DDDs (daily defined doses), deprecating the use of <code>ab_ddd(..., units = TRUE)</code> to be more consistent in data types of function output</p></li>
</ul></div> </ul></div>
<div class="section level4"> <div class="section level4">
<h4 id="changed-1-7-1-9066">Changed<a class="anchor" aria-label="anchor" href="#changed-1-7-1-9066"></a></h4> <h4 id="changed-1-7-1-9067">Changed<a class="anchor" aria-label="anchor" href="#changed-1-7-1-9067"></a></h4>
<ul><li>Updated the bacterial taxonomy to 5 October 2021 (according to <a href="https://lpsn.dsmz.de" class="external-link">LPSN</a>), including all 11 new staphylococcal species named since 1 January last year</li> <ul><li>Updated the bacterial taxonomy to 5 October 2021 (according to <a href="https://lpsn.dsmz.de" class="external-link">LPSN</a>), including all 11 new staphylococcal species named since 1 January last year</li>
<li>The <code>antibiotics</code> data set now contains <strong>all ATC codes</strong> that are available through the <a href="https://www.whocc.no" class="external-link">WHOCC website</a>, regardless of drugs being present in more than one ATC group. This means that: <li>The <code>antibiotics</code> data set now contains <strong>all ATC codes</strong> that are available through the <a href="https://www.whocc.no" class="external-link">WHOCC website</a>, regardless of drugs being present in more than one ATC group. This means that:
<ul><li>Some drugs now contain multiple ATC codes (e.g., metronidazole contains 5)</li> <ul><li>Some drugs now contain multiple ATC codes (e.g., metronidazole contains 5)</li>
@ -229,7 +230,7 @@
</li> </li>
<li>The right input types for <code><a href="../reference/random.html">random_mic()</a></code>, <code><a href="../reference/random.html">random_disk()</a></code> and <code><a href="../reference/random.html">random_rsi()</a></code> are now enforced</li> <li>The right input types for <code><a href="../reference/random.html">random_mic()</a></code>, <code><a href="../reference/random.html">random_disk()</a></code> and <code><a href="../reference/random.html">random_rsi()</a></code> are now enforced</li>
<li> <li>
<code><a href="../reference/as.rsi.html">as.rsi()</a></code> has an improved algorithm and can now also correct for textual input (such as “Susceptible”, “Resistant”) in Danish, Dutch, English, French, German, Italian, Portuguese and Spanish</li> <code><a href="../reference/as.rsi.html">as.rsi()</a></code> has an improved algorithm and can now also correct for textual input (such as “Susceptible”, “Resistant”) in all supported languages</li>
<li> <li>
<code><a href="../reference/as.mic.html">as.mic()</a></code> has an improved algorithm</li> <code><a href="../reference/as.mic.html">as.mic()</a></code> has an improved algorithm</li>
<li>When warnings are thrown because of too few isolates in any <code>count_*()</code>, <code>proportion_*()</code> function (or <code>resistant()</code> or <code>susceptible()</code>), the <code>dplyr</code> group will be shown, if available</li> <li>When warnings are thrown because of too few isolates in any <code>count_*()</code>, <code>proportion_*()</code> function (or <code>resistant()</code> or <code>susceptible()</code>), the <code>dplyr</code> group will be shown, if available</li>
@ -252,7 +253,7 @@
<code><a href="../reference/get_episode.html">get_episode()</a></code> and <code><a href="../reference/get_episode.html">is_new_episode()</a></code> can now cope with <code>NA</code>s</li> <code><a href="../reference/get_episode.html">get_episode()</a></code> and <code><a href="../reference/get_episode.html">is_new_episode()</a></code> can now cope with <code>NA</code>s</li>
</ul></div> </ul></div>
<div class="section level4"> <div class="section level4">
<h4 id="other-1-7-1-9066">Other<a class="anchor" aria-label="anchor" href="#other-1-7-1-9066"></a></h4> <h4 id="other-1-7-1-9067">Other<a class="anchor" aria-label="anchor" href="#other-1-7-1-9067"></a></h4>
<ul><li>This package is now being maintained by two epidemiologists and a data scientist from two different non-profit healthcare organisations. All functions in this package are now all considered to be stable. Updates to the AMR interpretation rules (such as by EUCAST and CLSI), the microbial taxonomy, and the antibiotic dosages will all be updated every 6 to 12 months from now on.</li> <ul><li>This package is now being maintained by two epidemiologists and a data scientist from two different non-profit healthcare organisations. All functions in this package are now all considered to be stable. Updates to the AMR interpretation rules (such as by EUCAST and CLSI), the microbial taxonomy, and the antibiotic dosages will all be updated every 6 to 12 months from now on.</li>
</ul></div> </ul></div>
</div> </div>
@ -623,7 +624,7 @@
<li>Big speed improvement for already valid microorganism ID. This also means an significant speed improvement for using <code>mo_*</code> functions like <code><a href="../reference/mo_property.html">mo_name()</a></code> on microoganism IDs.</li> <li>Big speed improvement for already valid microorganism ID. This also means an significant speed improvement for using <code>mo_*</code> functions like <code><a href="../reference/mo_property.html">mo_name()</a></code> on microoganism IDs.</li>
<li>Added argument <code>ignore_pattern</code> to <code><a href="../reference/as.mo.html">as.mo()</a></code> which can also be given to <code>mo_*</code> functions like <code><a href="../reference/mo_property.html">mo_name()</a></code>, to exclude known non-relevant input from analysing. This can also be set with the option <code>AMR_ignore_pattern</code>.</li> <li>Added argument <code>ignore_pattern</code> to <code><a href="../reference/as.mo.html">as.mo()</a></code> which can also be given to <code>mo_*</code> functions like <code><a href="../reference/mo_property.html">mo_name()</a></code>, to exclude known non-relevant input from analysing. This can also be set with the option <code>AMR_ignore_pattern</code>.</li>
</ul></li> </ul></li>
<li><p><code><a href="../reference/translate.html">get_locale()</a></code> now uses at default <code>Sys.getenv("LANG")</code> or, if <code>LANG</code> is not set, <code><a href="https://rdrr.io/r/base/locales.html" class="external-link">Sys.getlocale()</a></code>. This can be overwritten by setting the option <code>AMR_locale</code>.</p></li> <li><p><code>get_locale()</code> now uses at default <code>Sys.getenv("LANG")</code> or, if <code>LANG</code> is not set, <code><a href="https://rdrr.io/r/base/locales.html" class="external-link">Sys.getlocale()</a></code>. This can be overwritten by setting the option <code>AMR_locale</code>.</p></li>
<li><p>Big speed improvement for <code><a href="../reference/eucast_rules.html">eucast_rules()</a></code></p></li> <li><p>Big speed improvement for <code><a href="../reference/eucast_rules.html">eucast_rules()</a></code></p></li>
<li><p>Overall speed improvement by tweaking joining functions</p></li> <li><p>Overall speed improvement by tweaking joining functions</p></li>
<li><p>Function <code><a href="../reference/mo_property.html">mo_shortname()</a></code> now returns the genus for input where the species is unknown</p></li> <li><p>Function <code><a href="../reference/mo_property.html">mo_shortname()</a></code> now returns the genus for input where the species is unknown</p></li>

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@ -12,7 +12,7 @@ articles:
datasets: datasets.html datasets: datasets.html
resistance_predict: resistance_predict.html resistance_predict: resistance_predict.html
welcome_to_AMR: welcome_to_AMR.html welcome_to_AMR: welcome_to_AMR.html
last_built: 2021-12-06T10:09Z last_built: 2021-12-12T08:37Z
urls: urls:
reference: https://msberends.github.io/AMR/reference reference: https://msberends.github.io/AMR/reference
article: https://msberends.github.io/AMR/articles article: https://msberends.github.io/AMR/articles

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@ -17,7 +17,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a> <a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9064</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9067</span>
</span> </span>
</div> </div>
@ -161,7 +161,7 @@
<p>Use these functions to return a specific property of an antibiotic from the <a href="antibiotics.html">antibiotics</a> data set. All input values will be evaluated internally with <code><a href="as.ab.html">as.ab()</a></code>.</p> <p>Use these functions to return a specific property of an antibiotic from the <a href="antibiotics.html">antibiotics</a> data set. All input values will be evaluated internally with <code><a href="as.ab.html">as.ab()</a></code>.</p>
</div> </div>
<div id="ref-usage">Usage,<div class="sourceCode"><pre class="sourceCode r"><code><span class="fu">ab_name</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, tolower <span class="op">=</span> <span class="cn">FALSE</span>, <span class="va">...</span><span class="op">)</span> <div id="ref-usage">Usage,<div class="sourceCode"><pre class="sourceCode r"><code><span class="fu">ab_name</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, tolower <span class="op">=</span> <span class="cn">FALSE</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">ab_cid</span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">ab_cid</span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span>
@ -169,13 +169,13 @@
<span class="fu">ab_tradenames</span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">ab_tradenames</span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">ab_group</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">ab_group</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">ab_atc</span><span class="op">(</span><span class="va">x</span>, only_first <span class="op">=</span> <span class="cn">FALSE</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">ab_atc</span><span class="op">(</span><span class="va">x</span>, only_first <span class="op">=</span> <span class="cn">FALSE</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">ab_atc_group1</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">ab_atc_group1</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">ab_atc_group2</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">ab_atc_group2</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">ab_loinc</span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">ab_loinc</span><span class="op">(</span><span class="va">x</span>, <span class="va">...</span><span class="op">)</span>
@ -183,17 +183,17 @@
<span class="fu">ab_ddd_units</span><span class="op">(</span><span class="va">x</span>, administration <span class="op">=</span> <span class="st">"oral"</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">ab_ddd_units</span><span class="op">(</span><span class="va">x</span>, administration <span class="op">=</span> <span class="st">"oral"</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">ab_info</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">ab_info</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">ab_url</span><span class="op">(</span><span class="va">x</span>, open <span class="op">=</span> <span class="cn">FALSE</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">ab_url</span><span class="op">(</span><span class="va">x</span>, open <span class="op">=</span> <span class="cn">FALSE</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">ab_property</span><span class="op">(</span><span class="va">x</span>, property <span class="op">=</span> <span class="st">"name"</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">ab_property</span><span class="op">(</span><span class="va">x</span>, property <span class="op">=</span> <span class="st">"name"</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">set_ab_names</span><span class="op">(</span> <span class="fu">set_ab_names</span><span class="op">(</span>
<span class="va">data</span>, <span class="va">data</span>,
<span class="va">...</span>, <span class="va">...</span>,
property <span class="op">=</span> <span class="st">"name"</span>, property <span class="op">=</span> <span class="st">"name"</span>,
language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>,
snake_case <span class="op">=</span> <span class="cn">NULL</span> snake_case <span class="op">=</span> <span class="cn">NULL</span>
<span class="op">)</span></code></pre></div></div> <span class="op">)</span></code></pre></div></div>
@ -202,7 +202,7 @@
<dl><dt>x</dt> <dl><dt>x</dt>
<dd><p>any (vector of) text that can be coerced to a valid antibiotic code with <code><a href="as.ab.html">as.ab()</a></code></p></dd> <dd><p>any (vector of) text that can be coerced to a valid antibiotic code with <code><a href="as.ab.html">as.ab()</a></code></p></dd>
<dt>language</dt> <dt>language</dt>
<dd><p>language of the returned text, defaults to system language (see <code><a href="translate.html">get_locale()</a></code>) and can also be set with <code>getOption("AMR_locale")</code>. Use <code>language = NULL</code> or <code>language = ""</code> to prevent translation.</p></dd> <dd><p>language of the returned text, defaults to system language (see <code><a href="translate.html">get_AMR_locale()</a></code>) and can also be set with <code>getOption("AMR_locale")</code>. Use <code>language = NULL</code> or <code>language = ""</code> to prevent translation.</p></dd>
<dt>tolower</dt> <dt>tolower</dt>
<dd><p>a <a href="https://rdrr.io/r/base/logical.html" class="external-link">logical</a> to indicate whether the first <a href="https://rdrr.io/r/base/character.html" class="external-link">character</a> of every output should be transformed to a lower case <a href="https://rdrr.io/r/base/character.html" class="external-link">character</a>. This will lead to e.g. "polymyxin B" and not "polymyxin b".</p></dd> <dd><p>a <a href="https://rdrr.io/r/base/logical.html" class="external-link">logical</a> to indicate whether the first <a href="https://rdrr.io/r/base/character.html" class="external-link">character</a> of every output should be transformed to a lower case <a href="https://rdrr.io/r/base/character.html" class="external-link">character</a>. This will lead to e.g. "polymyxin B" and not "polymyxin b".</p></dd>
<dt>...</dt> <dt>...</dt>

2
docs/reference/antibiotic_class_selectors.html
View File

@ -17,7 +17,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a> <a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9063</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9067</span>
</span> </span>
</div> </div>

6
docs/reference/as.mo.html
View File

@ -17,7 +17,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a> <a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9062</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9067</span>
</span> </span>
</div> </div>
@ -168,7 +168,7 @@
allow_uncertain <span class="op">=</span> <span class="cn">TRUE</span>, allow_uncertain <span class="op">=</span> <span class="cn">TRUE</span>,
reference_df <span class="op">=</span> <span class="fu"><a href="mo_source.html">get_mo_source</a></span><span class="op">(</span><span class="op">)</span>, reference_df <span class="op">=</span> <span class="fu"><a href="mo_source.html">get_mo_source</a></span><span class="op">(</span><span class="op">)</span>,
ignore_pattern <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/options.html" class="external-link">getOption</a></span><span class="op">(</span><span class="st">"AMR_ignore_pattern"</span><span class="op">)</span>, ignore_pattern <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/options.html" class="external-link">getOption</a></span><span class="op">(</span><span class="st">"AMR_ignore_pattern"</span><span class="op">)</span>,
language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>,
info <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/interactive.html" class="external-link">interactive</a></span><span class="op">(</span><span class="op">)</span>, info <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/interactive.html" class="external-link">interactive</a></span><span class="op">(</span><span class="op">)</span>,
<span class="va">...</span> <span class="va">...</span>
<span class="op">)</span> <span class="op">)</span>
@ -198,7 +198,7 @@
<dt>ignore_pattern</dt> <dt>ignore_pattern</dt>
<dd><p>a regular expression (case-insensitive) of which all matches in <code>x</code> must return <code>NA</code>. This can be convenient to exclude known non-relevant input and can also be set with the option <code>AMR_ignore_pattern</code>, e.g. <code>options(AMR_ignore_pattern = "(not reported|contaminated flora)")</code>.</p></dd> <dd><p>a regular expression (case-insensitive) of which all matches in <code>x</code> must return <code>NA</code>. This can be convenient to exclude known non-relevant input and can also be set with the option <code>AMR_ignore_pattern</code>, e.g. <code>options(AMR_ignore_pattern = "(not reported|contaminated flora)")</code>.</p></dd>
<dt>language</dt> <dt>language</dt>
<dd><p>language to translate text like "no growth", which defaults to the system language (see <code><a href="translate.html">get_locale()</a></code>)</p></dd> <dd><p>language to translate text like "no growth", which defaults to the system language (see <code><a href="translate.html">get_AMR_locale()</a></code>)</p></dd>
<dt>info</dt> <dt>info</dt>
<dd><p>a <a href="https://rdrr.io/r/base/logical.html" class="external-link">logical</a> to indicate if a progress bar should be printed if more than 25 items are to be coerced, defaults to <code>TRUE</code> only in interactive mode</p></dd> <dd><p>a <a href="https://rdrr.io/r/base/logical.html" class="external-link">logical</a> to indicate if a progress bar should be printed if more than 25 items are to be coerced, defaults to <code>TRUE</code> only in interactive mode</p></dd>
<dt>...</dt> <dt>...</dt>

4
docs/reference/as.rsi.html
View File

@ -17,7 +17,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a> <a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9064</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9067</span>
</span> </span>
</div> </div>
@ -254,7 +254,7 @@
<li><p>For <strong>interpreting disk diffusion diameters</strong> according to EUCAST or CLSI. You must clean your disk zones first using <code><a href="as.disk.html">as.disk()</a></code>, that also gives your columns the new data class <code><a href="as.disk.html">disk</a></code>. Also, be sure to have a column with microorganism names or codes. It will be found automatically, but can be set manually using the <code>mo</code> argument.</p><ul><li><p>Using <code>dplyr</code>, R/SI interpretation can be done very easily with either:</p><div class="sourceCode"><pre><code><span class="va">your_data</span> <span class="op"><a href="https://magrittr.tidyverse.org/reference/pipe.html" class="external-link">%&gt;%</a></span> <span class="fu"><a href="https://dplyr.tidyverse.org/reference/mutate_all.html" class="external-link">mutate_if</a></span><span class="op">(</span><span class="va">is.disk</span>, <span class="va">as.rsi</span><span class="op">)</span> <span class="co"># until dplyr 1.0.0</span> <li><p>For <strong>interpreting disk diffusion diameters</strong> according to EUCAST or CLSI. You must clean your disk zones first using <code><a href="as.disk.html">as.disk()</a></code>, that also gives your columns the new data class <code><a href="as.disk.html">disk</a></code>. Also, be sure to have a column with microorganism names or codes. It will be found automatically, but can be set manually using the <code>mo</code> argument.</p><ul><li><p>Using <code>dplyr</code>, R/SI interpretation can be done very easily with either:</p><div class="sourceCode"><pre><code><span class="va">your_data</span> <span class="op"><a href="https://magrittr.tidyverse.org/reference/pipe.html" class="external-link">%&gt;%</a></span> <span class="fu"><a href="https://dplyr.tidyverse.org/reference/mutate_all.html" class="external-link">mutate_if</a></span><span class="op">(</span><span class="va">is.disk</span>, <span class="va">as.rsi</span><span class="op">)</span> <span class="co"># until dplyr 1.0.0</span>
<span class="va">your_data</span> <span class="op"><a href="https://magrittr.tidyverse.org/reference/pipe.html" class="external-link">%&gt;%</a></span> <span class="fu"><a href="https://dplyr.tidyverse.org/reference/mutate.html" class="external-link">mutate</a></span><span class="op">(</span><span class="fu"><a href="https://dplyr.tidyverse.org/reference/across.html" class="external-link">across</a></span><span class="op">(</span><span class="fu">where</span><span class="op">(</span><span class="va">is.disk</span><span class="op">)</span>, <span class="va">as.rsi</span><span class="op">)</span><span class="op">)</span> <span class="co"># since dplyr 1.0.0</span></code></pre></div></li> <span class="va">your_data</span> <span class="op"><a href="https://magrittr.tidyverse.org/reference/pipe.html" class="external-link">%&gt;%</a></span> <span class="fu"><a href="https://dplyr.tidyverse.org/reference/mutate.html" class="external-link">mutate</a></span><span class="op">(</span><span class="fu"><a href="https://dplyr.tidyverse.org/reference/across.html" class="external-link">across</a></span><span class="op">(</span><span class="fu">where</span><span class="op">(</span><span class="va">is.disk</span><span class="op">)</span>, <span class="va">as.rsi</span><span class="op">)</span><span class="op">)</span> <span class="co"># since dplyr 1.0.0</span></code></pre></div></li>
</ul></li> </ul></li>
<li><p>For <strong>interpreting a complete data set</strong>, with automatic determination of MIC values, disk diffusion diameters, microorganism names or codes, and antimicrobial test results. This is done very simply by running <code>as.rsi(data)</code>.</p></li> <li><p>For <strong>interpreting a complete data set</strong>, with automatic determination of MIC values, disk diffusion diameters, microorganism names or codes, and antimicrobial test results. This is done very simply by running <code>as.rsi(your_data)</code>.</p></li>
</ol></div> </ol></div>
<div class="section"> <div class="section">

6
docs/reference/bug_drug_combinations.html
View File

@ -17,7 +17,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a> <a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9062</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9067</span>
</span> </span>
</div> </div>
@ -167,7 +167,7 @@
<span class="fu"><a href="https://rdrr.io/r/base/format.html" class="external-link">format</a></span><span class="op">(</span> <span class="fu"><a href="https://rdrr.io/r/base/format.html" class="external-link">format</a></span><span class="op">(</span>
<span class="va">x</span>, <span class="va">x</span>,
translate_ab <span class="op">=</span> <span class="st">"name (ab, atc)"</span>, translate_ab <span class="op">=</span> <span class="st">"name (ab, atc)"</span>,
language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>,
minimum <span class="op">=</span> <span class="fl">30</span>, minimum <span class="op">=</span> <span class="fl">30</span>,
combine_SI <span class="op">=</span> <span class="cn">TRUE</span>, combine_SI <span class="op">=</span> <span class="cn">TRUE</span>,
combine_IR <span class="op">=</span> <span class="cn">FALSE</span>, combine_IR <span class="op">=</span> <span class="cn">FALSE</span>,
@ -195,7 +195,7 @@
<dt>translate_ab</dt> <dt>translate_ab</dt>
<dd><p>a <a href="https://rdrr.io/r/base/character.html" class="external-link">character</a> of length 1 containing column names of the <a href="antibiotics.html">antibiotics</a> data set</p></dd> <dd><p>a <a href="https://rdrr.io/r/base/character.html" class="external-link">character</a> of length 1 containing column names of the <a href="antibiotics.html">antibiotics</a> data set</p></dd>
<dt>language</dt> <dt>language</dt>
<dd><p>language of the returned text, defaults to system language (see <code><a href="translate.html">get_locale()</a></code>) and can also be set with <code>getOption("AMR_locale")</code>. Use <code>language = NULL</code> or <code>language = ""</code> to prevent translation.</p></dd> <dd><p>language of the returned text, defaults to system language (see <code><a href="translate.html">get_AMR_locale()</a></code>) and can also be set with <code>getOption("AMR_locale")</code>. Use <code>language = NULL</code> or <code>language = ""</code> to prevent translation.</p></dd>
<dt>minimum</dt> <dt>minimum</dt>
<dd><p>the minimum allowed number of available (tested) isolates. Any isolate count lower than <code>minimum</code> will return <code>NA</code> with a warning. The default number of <code>30</code> isolates is advised by the Clinical and Laboratory Standards Institute (CLSI) as best practice, see <em>Source</em>.</p></dd> <dd><p>the minimum allowed number of available (tested) isolates. Any isolate count lower than <code>minimum</code> will return <code>NA</code> with a warning. The default number of <code>30</code> isolates is advised by the Clinical and Laboratory Standards Institute (CLSI) as best practice, see <em>Source</em>.</p></dd>
<dt>combine_SI</dt> <dt>combine_SI</dt>

6
docs/reference/count.html
View File

@ -18,7 +18,7 @@ count_resistant() should be used to count resistant isolates, count_susceptible(
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a> <a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9062</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9067</span>
</span> </span>
</div> </div>
@ -184,7 +184,7 @@ count_resistant() should be used to count resistant isolates, count_susceptible(
<span class="fu">count_df</span><span class="op">(</span> <span class="fu">count_df</span><span class="op">(</span>
<span class="va">data</span>, <span class="va">data</span>,
translate_ab <span class="op">=</span> <span class="st">"name"</span>, translate_ab <span class="op">=</span> <span class="st">"name"</span>,
language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>,
combine_SI <span class="op">=</span> <span class="cn">TRUE</span>, combine_SI <span class="op">=</span> <span class="cn">TRUE</span>,
combine_IR <span class="op">=</span> <span class="cn">FALSE</span> combine_IR <span class="op">=</span> <span class="cn">FALSE</span>
<span class="op">)</span></code></pre></div></div> <span class="op">)</span></code></pre></div></div>
@ -200,7 +200,7 @@ count_resistant() should be used to count resistant isolates, count_susceptible(
<dt>translate_ab</dt> <dt>translate_ab</dt>
<dd><p>a column name of the <a href="antibiotics.html">antibiotics</a> data set to translate the antibiotic abbreviations to, using <code><a href="ab_property.html">ab_property()</a></code></p></dd> <dd><p>a column name of the <a href="antibiotics.html">antibiotics</a> data set to translate the antibiotic abbreviations to, using <code><a href="ab_property.html">ab_property()</a></code></p></dd>
<dt>language</dt> <dt>language</dt>
<dd><p>language of the returned text, defaults to system language (see <code><a href="translate.html">get_locale()</a></code>) and can also be set with <code>getOption("AMR_locale")</code>. Use <code>language = NULL</code> or <code>language = ""</code> to prevent translation.</p></dd> <dd><p>language of the returned text, defaults to system language (see <code><a href="translate.html">get_AMR_locale()</a></code>) and can also be set with <code>getOption("AMR_locale")</code>. Use <code>language = NULL</code> or <code>language = ""</code> to prevent translation.</p></dd>
<dt>combine_SI</dt> <dt>combine_SI</dt>
<dd><p>a <a href="https://rdrr.io/r/base/logical.html" class="external-link">logical</a> to indicate whether all values of S and I must be merged into one, so the output only consists of S+I vs. R (susceptible vs. resistant). This used to be the argument <code>combine_IR</code>, but this now follows the redefinition by EUCAST about the interpretation of I (increased exposure) in 2019, see section 'Interpretation of S, I and R' below. Default is <code>TRUE</code>.</p></dd> <dd><p>a <a href="https://rdrr.io/r/base/logical.html" class="external-link">logical</a> to indicate whether all values of S and I must be merged into one, so the output only consists of S+I vs. R (susceptible vs. resistant). This used to be the argument <code>combine_IR</code>, but this now follows the redefinition by EUCAST about the interpretation of I (increased exposure) in 2019, see section 'Interpretation of S, I and R' below. Default is <code>TRUE</code>.</p></dd>
<dt>combine_IR</dt> <dt>combine_IR</dt>

2
docs/reference/eucast_rules.html
View File

@ -18,7 +18,7 @@ To improve the interpretation of the antibiogram before EUCAST rules are applied
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a> <a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9063</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9067</span>
</span> </span>
</div> </div>

10
docs/reference/ggplot_rsi.html
View File

@ -17,7 +17,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a> <a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9062</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9067</span>
</span> </span>
</div> </div>
@ -173,7 +173,7 @@
combine_SI <span class="op">=</span> <span class="cn">TRUE</span>, combine_SI <span class="op">=</span> <span class="cn">TRUE</span>,
combine_IR <span class="op">=</span> <span class="cn">FALSE</span>, combine_IR <span class="op">=</span> <span class="cn">FALSE</span>,
minimum <span class="op">=</span> <span class="fl">30</span>, minimum <span class="op">=</span> <span class="fl">30</span>,
language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>,
nrow <span class="op">=</span> <span class="cn">NULL</span>, nrow <span class="op">=</span> <span class="cn">NULL</span>,
colours <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span>S <span class="op">=</span> <span class="st">"#3CAEA3"</span>, SI <span class="op">=</span> <span class="st">"#3CAEA3"</span>, I <span class="op">=</span> <span class="st">"#F6D55C"</span>, IR <span class="op">=</span> <span class="st">"#ED553B"</span>, R <span class="op">=</span> colours <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span>S <span class="op">=</span> <span class="st">"#3CAEA3"</span>, SI <span class="op">=</span> <span class="st">"#3CAEA3"</span>, I <span class="op">=</span> <span class="st">"#F6D55C"</span>, IR <span class="op">=</span> <span class="st">"#ED553B"</span>, R <span class="op">=</span>
<span class="st">"#ED553B"</span><span class="op">)</span>, <span class="st">"#ED553B"</span><span class="op">)</span>,
@ -194,7 +194,7 @@
fill <span class="op">=</span> <span class="st">"interpretation"</span>, fill <span class="op">=</span> <span class="st">"interpretation"</span>,
translate_ab <span class="op">=</span> <span class="st">"name"</span>, translate_ab <span class="op">=</span> <span class="st">"name"</span>,
minimum <span class="op">=</span> <span class="fl">30</span>, minimum <span class="op">=</span> <span class="fl">30</span>,
language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>,
combine_SI <span class="op">=</span> <span class="cn">TRUE</span>, combine_SI <span class="op">=</span> <span class="cn">TRUE</span>,
combine_IR <span class="op">=</span> <span class="cn">FALSE</span>, combine_IR <span class="op">=</span> <span class="cn">FALSE</span>,
<span class="va">...</span> <span class="va">...</span>
@ -213,7 +213,7 @@
x <span class="op">=</span> <span class="st">"antibiotic"</span>, x <span class="op">=</span> <span class="st">"antibiotic"</span>,
translate_ab <span class="op">=</span> <span class="st">"name"</span>, translate_ab <span class="op">=</span> <span class="st">"name"</span>,
minimum <span class="op">=</span> <span class="fl">30</span>, minimum <span class="op">=</span> <span class="fl">30</span>,
language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>,
combine_SI <span class="op">=</span> <span class="cn">TRUE</span>, combine_SI <span class="op">=</span> <span class="cn">TRUE</span>,
combine_IR <span class="op">=</span> <span class="cn">FALSE</span>, combine_IR <span class="op">=</span> <span class="cn">FALSE</span>,
datalabels.size <span class="op">=</span> <span class="fl">3</span>, datalabels.size <span class="op">=</span> <span class="fl">3</span>,
@ -245,7 +245,7 @@
<dt>minimum</dt> <dt>minimum</dt>
<dd><p>the minimum allowed number of available (tested) isolates. Any isolate count lower than <code>minimum</code> will return <code>NA</code> with a warning. The default number of <code>30</code> isolates is advised by the Clinical and Laboratory Standards Institute (CLSI) as best practice, see <em>Source</em>.</p></dd> <dd><p>the minimum allowed number of available (tested) isolates. Any isolate count lower than <code>minimum</code> will return <code>NA</code> with a warning. The default number of <code>30</code> isolates is advised by the Clinical and Laboratory Standards Institute (CLSI) as best practice, see <em>Source</em>.</p></dd>
<dt>language</dt> <dt>language</dt>
<dd><p>language of the returned text, defaults to system language (see <code><a href="translate.html">get_locale()</a></code>) and can also be set with <code>getOption("AMR_locale")</code>. Use <code>language = NULL</code> or <code>language = ""</code> to prevent translation.</p></dd> <dd><p>language of the returned text, defaults to system language (see <code><a href="translate.html">get_AMR_locale()</a></code>) and can also be set with <code>getOption("AMR_locale")</code>. Use <code>language = NULL</code> or <code>language = ""</code> to prevent translation.</p></dd>
<dt>nrow</dt> <dt>nrow</dt>
<dd><p>(when using <code>facet</code>) number of rows</p></dd> <dd><p>(when using <code>facet</code>) number of rows</p></dd>
<dt>colours</dt> <dt>colours</dt>

4
docs/reference/index.html
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@ -17,7 +17,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a> <a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9064</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9067</span>
</span> </span>
</div> </div>
@ -348,7 +348,7 @@
</td> </td>
<td><p>Check Availability of Columns</p></td> <td><p>Check Availability of Columns</p></td>
</tr><tr><td> </tr><tr><td>
<p><code><a href="translate.html">get_locale()</a></code> </p> <p><code><a href="translate.html">get_AMR_locale()</a></code> </p>
</td> </td>
<td><p>Translate Strings from AMR Package</p></td> <td><p>Translate Strings from AMR Package</p></td>
</tr><tr><td> </tr><tr><td>

2
docs/reference/intrinsic_resistant.html
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@ -17,7 +17,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a> <a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9064</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9067</span>
</span> </span>
</div> </div>

2
docs/reference/like.html
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@ -17,7 +17,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a> <a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9064</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9067</span>
</span> </span>
</div> </div>

2
docs/reference/mdro.html
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@ -17,7 +17,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a> <a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9064</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9067</span>
</span> </span>
</div> </div>

2
docs/reference/mo_matching_score.html
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@ -17,7 +17,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a> <a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9063</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9067</span>
</span> </span>
</div> </div>

62
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@ -17,7 +17,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a> <a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9064</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9067</span>
</span> </span>
</div> </div>
@ -161,70 +161,70 @@
<p>Use these functions to return a specific property of a microorganism based on the latest accepted taxonomy. All input values will be evaluated internally with <code><a href="as.mo.html">as.mo()</a></code>, which makes it possible to use microbial abbreviations, codes and names as input. See <em>Examples</em>.</p> <p>Use these functions to return a specific property of a microorganism based on the latest accepted taxonomy. All input values will be evaluated internally with <code><a href="as.mo.html">as.mo()</a></code>, which makes it possible to use microbial abbreviations, codes and names as input. See <em>Examples</em>.</p>
</div> </div>
<div id="ref-usage">Usage,<div class="sourceCode"><pre class="sourceCode r"><code><span class="fu">mo_name</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span> <div id="ref-usage">Usage,<div class="sourceCode"><pre class="sourceCode r"><code><span class="fu">mo_name</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">mo_fullname</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">mo_fullname</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">mo_shortname</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">mo_shortname</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">mo_subspecies</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">mo_subspecies</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">mo_species</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">mo_species</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">mo_genus</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">mo_genus</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">mo_family</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">mo_family</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">mo_order</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">mo_order</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">mo_class</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">mo_class</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">mo_phylum</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">mo_phylum</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">mo_kingdom</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">mo_kingdom</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">mo_domain</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">mo_domain</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">mo_type</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">mo_type</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">mo_gramstain</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">mo_gramstain</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">mo_is_gram_negative</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">mo_is_gram_negative</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">mo_is_gram_positive</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">mo_is_gram_positive</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">mo_is_yeast</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">mo_is_yeast</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">mo_is_intrinsic_resistant</span><span class="op">(</span><span class="va">x</span>, <span class="va">ab</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">mo_is_intrinsic_resistant</span><span class="op">(</span><span class="va">x</span>, <span class="va">ab</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">mo_snomed</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">mo_snomed</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">mo_ref</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">mo_ref</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">mo_authors</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">mo_authors</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">mo_year</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">mo_year</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">mo_lpsn</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">mo_lpsn</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">mo_rank</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">mo_rank</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">mo_taxonomy</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">mo_taxonomy</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">mo_synonyms</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">mo_synonyms</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">mo_info</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">mo_info</span><span class="op">(</span><span class="va">x</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">mo_url</span><span class="op">(</span><span class="va">x</span>, open <span class="op">=</span> <span class="cn">FALSE</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span> <span class="fu">mo_url</span><span class="op">(</span><span class="va">x</span>, open <span class="op">=</span> <span class="cn">FALSE</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span>
<span class="fu">mo_property</span><span class="op">(</span><span class="va">x</span>, property <span class="op">=</span> <span class="st">"fullname"</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span></code></pre></div></div> <span class="fu">mo_property</span><span class="op">(</span><span class="va">x</span>, property <span class="op">=</span> <span class="st">"fullname"</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>, <span class="va">...</span><span class="op">)</span></code></pre></div></div>
<div id="arguments"> <div id="arguments">
<h2>Arguments</h2> <h2>Arguments</h2>
<dl><dt>x</dt> <dl><dt>x</dt>
<dd><p>any <a href="https://rdrr.io/r/base/character.html" class="external-link">character</a> (vector) that can be coerced to a valid microorganism code with <code><a href="as.mo.html">as.mo()</a></code>. Can be left blank for auto-guessing the column containing microorganism codes if used in a data set, see <em>Examples</em>.</p></dd> <dd><p>any <a href="https://rdrr.io/r/base/character.html" class="external-link">character</a> (vector) that can be coerced to a valid microorganism code with <code><a href="as.mo.html">as.mo()</a></code>. Can be left blank for auto-guessing the column containing microorganism codes if used in a data set, see <em>Examples</em>.</p></dd>
<dt>language</dt> <dt>language</dt>
<dd><p>language of the returned text, defaults to system language (see <code><a href="translate.html">get_locale()</a></code>) and can be overwritten by setting the option <code>AMR_locale</code>, e.g. <code>options(AMR_locale = "de")</code>, see <a href="translate.html">translate</a>. Also used to translate text like "no growth". Use <code>language = NULL</code> or <code>language = ""</code> to prevent translation.</p></dd> <dd><p>language of the returned text, defaults to system language (see <code><a href="translate.html">get_AMR_locale()</a></code>) and can be overwritten by setting the option <code>AMR_locale</code>, e.g. <code>options(AMR_locale = "de")</code>, see <a href="translate.html">translate</a>. Also used to translate text like "no growth". Use <code>language = NULL</code> or <code>language = ""</code> to prevent translation.</p></dd>
<dt>...</dt> <dt>...</dt>
<dd><p>other arguments passed on to <code><a href="as.mo.html">as.mo()</a></code>, such as 'allow_uncertain' and 'ignore_pattern'</p></dd> <dd><p>other arguments passed on to <code><a href="as.mo.html">as.mo()</a></code>, such as 'allow_uncertain' and 'ignore_pattern'</p></dd>
<dt>ab</dt> <dt>ab</dt>

14
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@ -17,7 +17,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a> <a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9062</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9067</span>
</span> </span>
</div> </div>
@ -171,7 +171,7 @@
ylab <span class="op">=</span> <span class="st">"Frequency"</span>, ylab <span class="op">=</span> <span class="st">"Frequency"</span>,
xlab <span class="op">=</span> <span class="st">"Minimum Inhibitory Concentration (mg/L)"</span>, xlab <span class="op">=</span> <span class="st">"Minimum Inhibitory Concentration (mg/L)"</span>,
colours_RSI <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"#ED553B"</span>, <span class="st">"#3CAEA3"</span>, <span class="st">"#F6D55C"</span><span class="op">)</span>, colours_RSI <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"#ED553B"</span>, <span class="st">"#3CAEA3"</span>, <span class="st">"#F6D55C"</span><span class="op">)</span>,
language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>,
expand <span class="op">=</span> <span class="cn">TRUE</span>, expand <span class="op">=</span> <span class="cn">TRUE</span>,
<span class="va">...</span> <span class="va">...</span>
<span class="op">)</span> <span class="op">)</span>
@ -186,7 +186,7 @@
ylab <span class="op">=</span> <span class="st">"Frequency"</span>, ylab <span class="op">=</span> <span class="st">"Frequency"</span>,
xlab <span class="op">=</span> <span class="st">"Minimum Inhibitory Concentration (mg/L)"</span>, xlab <span class="op">=</span> <span class="st">"Minimum Inhibitory Concentration (mg/L)"</span>,
colours_RSI <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"#ED553B"</span>, <span class="st">"#3CAEA3"</span>, <span class="st">"#F6D55C"</span><span class="op">)</span>, colours_RSI <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"#ED553B"</span>, <span class="st">"#3CAEA3"</span>, <span class="st">"#F6D55C"</span><span class="op">)</span>,
language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>,
expand <span class="op">=</span> <span class="cn">TRUE</span>, expand <span class="op">=</span> <span class="cn">TRUE</span>,
<span class="va">...</span> <span class="va">...</span>
<span class="op">)</span> <span class="op">)</span>
@ -204,7 +204,7 @@
ab <span class="op">=</span> <span class="cn">NULL</span>, ab <span class="op">=</span> <span class="cn">NULL</span>,
guideline <span class="op">=</span> <span class="st">"EUCAST"</span>, guideline <span class="op">=</span> <span class="st">"EUCAST"</span>,
colours_RSI <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"#ED553B"</span>, <span class="st">"#3CAEA3"</span>, <span class="st">"#F6D55C"</span><span class="op">)</span>, colours_RSI <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"#ED553B"</span>, <span class="st">"#3CAEA3"</span>, <span class="st">"#F6D55C"</span><span class="op">)</span>,
language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>,
expand <span class="op">=</span> <span class="cn">TRUE</span>, expand <span class="op">=</span> <span class="cn">TRUE</span>,
<span class="va">...</span> <span class="va">...</span>
<span class="op">)</span> <span class="op">)</span>
@ -219,7 +219,7 @@
xlab <span class="op">=</span> <span class="st">"Disk diffusion diameter (mm)"</span>, xlab <span class="op">=</span> <span class="st">"Disk diffusion diameter (mm)"</span>,
guideline <span class="op">=</span> <span class="st">"EUCAST"</span>, guideline <span class="op">=</span> <span class="st">"EUCAST"</span>,
colours_RSI <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"#ED553B"</span>, <span class="st">"#3CAEA3"</span>, <span class="st">"#F6D55C"</span><span class="op">)</span>, colours_RSI <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"#ED553B"</span>, <span class="st">"#3CAEA3"</span>, <span class="st">"#F6D55C"</span><span class="op">)</span>,
language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>,
expand <span class="op">=</span> <span class="cn">TRUE</span>, expand <span class="op">=</span> <span class="cn">TRUE</span>,
<span class="va">...</span> <span class="va">...</span>
<span class="op">)</span> <span class="op">)</span>
@ -243,7 +243,7 @@
xlab <span class="op">=</span> <span class="st">"Antimicrobial Interpretation"</span>, xlab <span class="op">=</span> <span class="st">"Antimicrobial Interpretation"</span>,
ylab <span class="op">=</span> <span class="st">"Frequency"</span>, ylab <span class="op">=</span> <span class="st">"Frequency"</span>,
colours_RSI <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"#ED553B"</span>, <span class="st">"#3CAEA3"</span>, <span class="st">"#F6D55C"</span><span class="op">)</span>, colours_RSI <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"#ED553B"</span>, <span class="st">"#3CAEA3"</span>, <span class="st">"#F6D55C"</span><span class="op">)</span>,
language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>,
<span class="va">...</span> <span class="va">...</span>
<span class="op">)</span> <span class="op">)</span>
@ -267,7 +267,7 @@
<dt>colours_RSI</dt> <dt>colours_RSI</dt>
<dd><p>colours to use for filling in the bars, must be a vector of three values (in the order R, S and I). The default colours are colour-blind friendly.</p></dd> <dd><p>colours to use for filling in the bars, must be a vector of three values (in the order R, S and I). The default colours are colour-blind friendly.</p></dd>
<dt>language</dt> <dt>language</dt>
<dd><p>language to be used to translate 'Susceptible', 'Increased exposure'/'Intermediate' and 'Resistant', defaults to system language (see <code><a href="translate.html">get_locale()</a></code>) and can be overwritten by setting the option <code>AMR_locale</code>, e.g. <code>options(AMR_locale = "de")</code>, see <a href="translate.html">translate</a>. Use <code>language = NULL</code> or <code>language = ""</code> to prevent translation.</p></dd> <dd><p>language to be used to translate 'Susceptible', 'Increased exposure'/'Intermediate' and 'Resistant', defaults to system language (see <code><a href="translate.html">get_AMR_locale()</a></code>) and can be overwritten by setting the option <code>AMR_locale</code>, e.g. <code>options(AMR_locale = "de")</code>, see <a href="translate.html">translate</a>. Use <code>language = NULL</code> or <code>language = ""</code> to prevent translation.</p></dd>
<dt>expand</dt> <dt>expand</dt>
<dd><p>a <a href="https://rdrr.io/r/base/logical.html" class="external-link">logical</a> to indicate whether the range on the x axis should be expanded between the lowest and highest value. For MIC values, intermediate values will be factors of 2 starting from the highest MIC value. For disk diameters, the whole diameter range will be filled.</p></dd> <dd><p>a <a href="https://rdrr.io/r/base/logical.html" class="external-link">logical</a> to indicate whether the range on the x axis should be expanded between the lowest and highest value. For MIC values, intermediate values will be factors of 2 starting from the highest MIC value. For disk diameters, the whole diameter range will be filled.</p></dd>
<dt>...</dt> <dt>...</dt>

8
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@ -18,7 +18,7 @@ resistance() should be used to calculate resistance, susceptibility() should be
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a> <a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9062</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9067</span>
</span> </span>
</div> </div>
@ -180,7 +180,7 @@ resistance() should be used to calculate resistance, susceptibility() should be
<span class="fu">proportion_df</span><span class="op">(</span> <span class="fu">proportion_df</span><span class="op">(</span>
<span class="va">data</span>, <span class="va">data</span>,
translate_ab <span class="op">=</span> <span class="st">"name"</span>, translate_ab <span class="op">=</span> <span class="st">"name"</span>,
language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>,
minimum <span class="op">=</span> <span class="fl">30</span>, minimum <span class="op">=</span> <span class="fl">30</span>,
as_percent <span class="op">=</span> <span class="cn">FALSE</span>, as_percent <span class="op">=</span> <span class="cn">FALSE</span>,
combine_SI <span class="op">=</span> <span class="cn">TRUE</span>, combine_SI <span class="op">=</span> <span class="cn">TRUE</span>,
@ -190,7 +190,7 @@ resistance() should be used to calculate resistance, susceptibility() should be
<span class="fu">rsi_df</span><span class="op">(</span> <span class="fu">rsi_df</span><span class="op">(</span>
<span class="va">data</span>, <span class="va">data</span>,
translate_ab <span class="op">=</span> <span class="st">"name"</span>, translate_ab <span class="op">=</span> <span class="st">"name"</span>,
language <span class="op">=</span> <span class="fu"><a href="translate.html">get_locale</a></span><span class="op">(</span><span class="op">)</span>, language <span class="op">=</span> <span class="fu"><a href="translate.html">get_AMR_locale</a></span><span class="op">(</span><span class="op">)</span>,
minimum <span class="op">=</span> <span class="fl">30</span>, minimum <span class="op">=</span> <span class="fl">30</span>,
as_percent <span class="op">=</span> <span class="cn">FALSE</span>, as_percent <span class="op">=</span> <span class="cn">FALSE</span>,
combine_SI <span class="op">=</span> <span class="cn">TRUE</span>, combine_SI <span class="op">=</span> <span class="cn">TRUE</span>,
@ -216,7 +216,7 @@ resistance() should be used to calculate resistance, susceptibility() should be
<dt>translate_ab</dt> <dt>translate_ab</dt>
<dd><p>a column name of the <a href="antibiotics.html">antibiotics</a> data set to translate the antibiotic abbreviations to, using <code><a href="ab_property.html">ab_property()</a></code></p></dd> <dd><p>a column name of the <a href="antibiotics.html">antibiotics</a> data set to translate the antibiotic abbreviations to, using <code><a href="ab_property.html">ab_property()</a></code></p></dd>
<dt>language</dt> <dt>language</dt>
<dd><p>language of the returned text, defaults to system language (see <code><a href="translate.html">get_locale()</a></code>) and can also be set with <code>getOption("AMR_locale")</code>. Use <code>language = NULL</code> or <code>language = ""</code> to prevent translation.</p></dd> <dd><p>language of the returned text, defaults to system language (see <code><a href="translate.html">get_AMR_locale()</a></code>) and can also be set with <code>getOption("AMR_locale")</code>. Use <code>language = NULL</code> or <code>language = ""</code> to prevent translation.</p></dd>
<dt>combine_SI</dt> <dt>combine_SI</dt>
<dd><p>a <a href="https://rdrr.io/r/base/logical.html" class="external-link">logical</a> to indicate whether all values of S and I must be merged into one, so the output only consists of S+I vs. R (susceptible vs. resistant). This used to be the argument <code>combine_IR</code>, but this now follows the redefinition by EUCAST about the interpretation of I (increased exposure) in 2019, see section 'Interpretation of S, I and R' below. Default is <code>TRUE</code>.</p></dd> <dd><p>a <a href="https://rdrr.io/r/base/logical.html" class="external-link">logical</a> to indicate whether all values of S and I must be merged into one, so the output only consists of S+I vs. R (susceptible vs. resistant). This used to be the argument <code>combine_IR</code>, but this now follows the redefinition by EUCAST about the interpretation of I (increased exposure) in 2019, see section 'Interpretation of S, I and R' below. Default is <code>TRUE</code>.</p></dd>
<dt>combine_IR</dt> <dt>combine_IR</dt>

14
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View File

@ -17,7 +17,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a> <a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9062</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9067</span>
</span> </span>
</div> </div>
@ -161,19 +161,19 @@
<p>For language-dependent output of AMR functions, like <code><a href="mo_property.html">mo_name()</a></code>, <code><a href="mo_property.html">mo_gramstain()</a></code>, <code><a href="mo_property.html">mo_type()</a></code> and <code><a href="ab_property.html">ab_name()</a></code>.</p> <p>For language-dependent output of AMR functions, like <code><a href="mo_property.html">mo_name()</a></code>, <code><a href="mo_property.html">mo_gramstain()</a></code>, <code><a href="mo_property.html">mo_type()</a></code> and <code><a href="ab_property.html">ab_name()</a></code>.</p>
</div> </div>
<div id="ref-usage">Usage,<div class="sourceCode"><pre class="sourceCode r"><code><span class="fu">get_locale</span><span class="op">(</span><span class="op">)</span></code></pre></div></div> <div id="ref-usage">Usage,<div class="sourceCode"><pre class="sourceCode r"><code><span class="fu">get_AMR_locale</span><span class="op">(</span><span class="op">)</span></code></pre></div></div>
<div id="details"> <div id="details">
<h2>Details</h2> <h2>Details</h2>
<p>Strings will be translated to foreign languages if they are defined in a local translation file. Additions to this file can be suggested at our repository. The file can be found here: <a href="https://github.com/msberends/AMR/blob/main/data-raw/translations.tsv" class="external-link">https://github.com/msberends/AMR/blob/main/data-raw/translations.tsv</a>. This file will be read by all functions where a translated output can be desired, like all <code><a href="mo_property.html">mo_*</a></code> functions (such as <code><a href="mo_property.html">mo_name()</a></code>, <code><a href="mo_property.html">mo_gramstain()</a></code>, <code><a href="mo_property.html">mo_type()</a></code>, etc.) and <code><a href="ab_property.html">ab_*</a></code> functions (such as <code><a href="ab_property.html">ab_name()</a></code>, <code><a href="ab_property.html">ab_group()</a></code>, etc.).</p> <p>Strings will be translated to foreign languages if they are defined in a local translation file. Additions to this file can be suggested at our repository. The file can be found here: <a href="https://github.com/msberends/AMR/blob/main/data-raw/translations.tsv" class="external-link">https://github.com/msberends/AMR/blob/main/data-raw/translations.tsv</a>. This file will be read by all functions where a translated output can be desired, like all <code><a href="mo_property.html">mo_*</a></code> functions (such as <code><a href="mo_property.html">mo_name()</a></code>, <code><a href="mo_property.html">mo_gramstain()</a></code>, <code><a href="mo_property.html">mo_type()</a></code>, etc.) and <code><a href="ab_property.html">ab_*</a></code> functions (such as <code><a href="ab_property.html">ab_name()</a></code>, <code><a href="ab_property.html">ab_group()</a></code>, etc.).</p>
<p>Currently supported languages are: Danish, Dutch, English, French, German, Italian, Portuguese and Spanish. All these languages have translations available for all antimicrobial agents and colloquial microorganism names.</p> <p>Currently supported languages are: Danish, Dutch, English, French, German, Italian, Portuguese, Russian, Spanish and Swedish. All these languages have translations available for all antimicrobial agents and colloquial microorganism names.</p>
<p>Please suggest your own translations <a href="https://github.com/msberends/AMR/issues/new?title=Translations" class="external-link">by creating a new issue on our repository</a>.</p><div class="section"> <p>Please suggest your own translations <a href="https://github.com/msberends/AMR/issues/new?title=Translations" class="external-link">by creating a new issue on our repository</a>.</p><div class="section">
<h3 id="changing-the-default-language">Changing the Default Language<a class="anchor" aria-label="anchor" href="#changing-the-default-language"></a></h3> <h3 id="changing-the-default-language">Changing the Default Language<a class="anchor" aria-label="anchor" href="#changing-the-default-language"></a></h3>
<p>The system language will be used at default (as returned by <code>Sys.getenv("LANG")</code> or, if <code>LANG</code> is not set, <code><a href="https://rdrr.io/r/base/locales.html" class="external-link">Sys.getlocale()</a></code>), if that language is supported. But the language to be used can be overwritten in two ways and will be checked in this order:</p><ol><li><p>Setting the R option <code>AMR_locale</code>, e.g. by running <code>options(AMR_locale = "de")</code></p></li> <p>The system language will be used at default (as returned by <code>Sys.getenv("LANG")</code> or, if <code>LANG</code> is not set, <code><a href="https://rdrr.io/r/base/locales.html" class="external-link">Sys.getlocale()</a></code>), if that language is supported. But the language to be used can be overwritten in two ways and will be checked in this order:</p><ol><li><p>Setting the R option <code>AMR_locale</code>, e.g. by running <code>options(AMR_locale = "de")</code></p></li>
<li><p>Setting the system variable <code>LANGUAGE</code> or <code>LANG</code>, e.g. by adding <code>LANGUAGE="de_DE.utf8"</code> to your <code>.Renviron</code> file in your home directory</p></li> <li><p>Setting the system variable <code>LANGUAGE</code> or <code>LANG</code>, e.g. by adding <code>LANGUAGE="de_DE.utf8"</code> to your <code>.Renviron</code> file in your home directory</p></li>
</ol><p>So if the R option <code>AMR_locale</code> is set, the system variables <code>LANGUAGE</code> and <code>LANG</code> will be ignored.</p> </ol><p>Thus, if the R option <code>AMR_locale</code> is set, the system variables <code>LANGUAGE</code> and <code>LANG</code> will be ignored.</p>
</div> </div>
</div> </div>
@ -196,15 +196,15 @@ The <a href="lifecycle.html">lifecycle</a> of this function is <strong>stable</s
<h2>Examples</h2> <h2>Examples</h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="co"># The 'language' argument of below functions</span> <div class="sourceCode"><pre class="sourceCode r"><code><span class="co"># The 'language' argument of below functions</span>
<span class="co"># will be set automatically to your system language</span> <span class="co"># will be set automatically to your system language</span>
<span class="co"># with get_locale()</span> <span class="co"># with get_AMR_locale()</span>
<span class="co"># English</span> <span class="co"># English</span>
<span class="fu"><a href="mo_property.html">mo_name</a></span><span class="op">(</span><span class="st">"CoNS"</span>, language <span class="op">=</span> <span class="st">"en"</span><span class="op">)</span> <span class="fu"><a href="mo_property.html">mo_name</a></span><span class="op">(</span><span class="st">"CoNS"</span>, language <span class="op">=</span> <span class="st">"en"</span><span class="op">)</span>
<span class="co">#&gt; "Coagulase-negative Staphylococcus (CoNS)"</span> <span class="co">#&gt; "Coagulase-negative Staphylococcus (CoNS)"</span>
<span class="co"># Danish</span> <span class="co"># Danish</span>
<span class="fu"><a href="mo_property.html">mo_name</a></span><span class="op">(</span><span class="st">"CoNS"</span>, language <span class="op">=</span> <span class="st">"nl"</span><span class="op">)</span> <span class="fu"><a href="mo_property.html">mo_name</a></span><span class="op">(</span><span class="st">"CoNS"</span>, language <span class="op">=</span> <span class="st">"da"</span><span class="op">)</span>
<span class="co">#&gt; "Koagulase-negative stafylokokker (CoNS)"</span> <span class="co">#&gt; "Koagulase-negative stafylokokker (KNS)"</span>
<span class="co"># Dutch</span> <span class="co"># Dutch</span>
<span class="fu"><a href="mo_property.html">mo_name</a></span><span class="op">(</span><span class="st">"CoNS"</span>, language <span class="op">=</span> <span class="st">"nl"</span><span class="op">)</span> <span class="fu"><a href="mo_property.html">mo_name</a></span><span class="op">(</span><span class="st">"CoNS"</span>, language <span class="op">=</span> <span class="st">"nl"</span><span class="op">)</span>

2
docs/survey.html
View File

@ -17,7 +17,7 @@
</button> </button>
<span class="navbar-brand"> <span class="navbar-brand">
<a class="navbar-link" href="index.html">AMR (for R)</a> <a class="navbar-link" href="index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9064</span> <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9067</span>
</span> </span>
</div> </div>

5
index.md
View File

@ -1,13 +1,16 @@
# `AMR` (for R) <img src="./logo.png" align="right" height="120px" /> # `AMR` (for R) <img src="./logo.png" align="right" height="120px" />
> Update: The latest [EUCAST guideline for intrinsic resistance](https://www.eucast.org/expert_rules_and_intrinsic_resistance/) (v3.3, October 2021) is now supported, and our taxonomy tables have been updated as well (LPSN, 5 October 2021). > Update: The latest [EUCAST guideline for intrinsic resistance](https://www.eucast.org/expert_rules_and_intrinsic_resistance/) (v3.3, October 2021) is now supported, and our taxonomy tables have been updated as well (LPSN, 5 October 2021).
>
> **A new version will be released after the [EUCAST guideline for clinical breakpoints](https://www.eucast.org/clinical_breakpoints/) (v12.0, likely January 2022) are implemented, to be expected shortly after the official guideline release.** > **A new version will be released after the [EUCAST guideline for clinical breakpoints](https://www.eucast.org/clinical_breakpoints/) (v12.0, likely January 2022) are implemented, to be expected shortly after the official guideline release.**
### What is `AMR` (for R)? ### What is `AMR` (for R)?
`AMR` is a free, open-source and independent [R package](https://www.r-project.org) (see [Copyright](#copyright)) to simplify the analysis and prediction of Antimicrobial Resistance (AMR) and to work with microbial and antimicrobial data and properties, by using evidence-based methods. **Our aim is to provide a standard** for clean and reproducible AMR data analysis, that can therefore empower epidemiological analyses to continuously enable surveillance and treatment evaluation in any setting. `AMR` is a free, open-source and independent [R package](https://www.r-project.org) (see [Copyright](#copyright)) to simplify the analysis and prediction of Antimicrobial Resistance (AMR) and to work with microbial and antimicrobial data and properties, by using evidence-based methods. **Our aim is to provide a standard** for clean and reproducible AMR data analysis, that can therefore empower epidemiological analyses to continuously enable surveillance and treatment evaluation in any setting.
After installing this package, R knows [**~71,000 distinct microbial species**](./reference/microorganisms.html) and all [**~560 antibiotic, antimycotic and antiviral drugs**](./reference/antibiotics.html) by name and code (including ATC, EARS-Net, PubChem, LOINC and SNOMED CT), and knows all about valid R/SI and MIC values. It supports any data format, including WHONET/EARS-Net data. Antimicrobial names and group names are available in Danish, Dutch, English, French, German, Italian, Portuguese and Spanish. After installing this package, R knows [**~71,000 distinct microbial species**](./reference/microorganisms.html) and all [**~560 antibiotic, antimycotic and antiviral drugs**](./reference/antibiotics.html) by name and code (including ATC, EARS-Net, PubChem, LOINC and SNOMED CT), and knows all about valid R/SI and MIC values. It supports any data format, including WHONET/EARS-Net data.
The `AMR` package is available in <img src="lang_da.svg" style="height: 11px !important; vertical-align: initial !important;"> Danish, <img src="lang_nl.svg" style="height: 11px !important; vertical-align: initial !important;"> Dutch, <img src="lang_en.svg" style="height: 11px !important; vertical-align: initial !important;"> English, <img src="lang_fr.svg" style="height: 11px !important; vertical-align: initial !important;"> French, <img src="lang_de.svg" style="height: 11px !important; vertical-align: initial !important;"> German, <img src="lang_it.svg" style="height: 11px !important; vertical-align: initial !important;"> Italian, <img src="lang_pt.svg" style="height: 11px !important; vertical-align: initial !important;"> Portuguese, <img src="lang_ru.svg" style="height: 11px !important; vertical-align: initial !important;"> Russian, <img src="lang_es.svg" style="height: 11px !important; vertical-align: initial !important;"> Spanish and <img src="lang_sv.svg" style="height: 11px !important; vertical-align: initial !important;"> Swedish. Antimicrobial drug (group) names and colloquial microorganism names are provided in these languages.
This package is [fully independent of any other R package](https://en.wikipedia.org/wiki/Dependency_hell) and works on Windows, macOS and Linux with all versions of R since R-3.0 (April 2013). **It was designed to work in any setting, including those with very limited resources**. It was created for both routine data analysis and academic research at the Faculty of Medical Sciences of the [University of Groningen](https://www.rug.nl), in collaboration with non-profit organisations [Certe Medical Diagnostics and Advice Foundation](https://www.certe.nl) and [University Medical Center Groningen](https://www.umcg.nl). This R package formed the basis of two PhD theses ([DOI 10.33612/diss.177417131](https://doi.org/10.33612/diss.177417131) and [DOI 10.33612/diss.192486375](https://doi.org/10.33612/diss.192486375)) but is [actively and durably maintained](./news) by two public healthcare organisations in the Netherlands. This package is [fully independent of any other R package](https://en.wikipedia.org/wiki/Dependency_hell) and works on Windows, macOS and Linux with all versions of R since R-3.0 (April 2013). **It was designed to work in any setting, including those with very limited resources**. It was created for both routine data analysis and academic research at the Faculty of Medical Sciences of the [University of Groningen](https://www.rug.nl), in collaboration with non-profit organisations [Certe Medical Diagnostics and Advice Foundation](https://www.certe.nl) and [University Medical Center Groningen](https://www.umcg.nl). This R package formed the basis of two PhD theses ([DOI 10.33612/diss.177417131](https://doi.org/10.33612/diss.177417131) and [DOI 10.33612/diss.192486375](https://doi.org/10.33612/diss.192486375)) but is [actively and durably maintained](./news) by two public healthcare organisations in the Netherlands.

4
inst/tinytest/test-data.R
View File

@ -48,6 +48,10 @@ expect_true(all(dosage$name %in% antibiotics$name))
# antibiotic names must always be coercible to their original AB code # antibiotic names must always be coercible to their original AB code
expect_identical(as.ab(antibiotics$name), antibiotics$ab) expect_identical(as.ab(antibiotics$name), antibiotics$ab)
# check if all languages are included in package environmental variable
expect_identical(sort(c("en", colnames(TRANSLATIONS)[nchar(colnames(TRANSLATIONS)) == 2])),
unname(LANGUAGES_SUPPORTED))
# there should be no diacritics (i.e. non ASCII) characters in the datasets (CRAN policy) # there should be no diacritics (i.e. non ASCII) characters in the datasets (CRAN policy)
datasets <- data(package = "AMR", envir = asNamespace("AMR"))$results[, "Item"] datasets <- data(package = "AMR", envir = asNamespace("AMR"))$results[, "Item"]
for (i in seq_len(length(datasets))) { for (i in seq_len(length(datasets))) {

16
man/ab_property.Rd
View File

@ -19,7 +19,7 @@
\alias{set_ab_names} \alias{set_ab_names}
\title{Get Properties of an Antibiotic} \title{Get Properties of an Antibiotic}
\usage{ \usage{
ab_name(x, language = get_locale(), tolower = FALSE, ...) ab_name(x, language = get_AMR_locale(), tolower = FALSE, ...)
ab_cid(x, ...) ab_cid(x, ...)
@ -27,13 +27,13 @@ ab_synonyms(x, ...)
ab_tradenames(x, ...) ab_tradenames(x, ...)
ab_group(x, language = get_locale(), ...) ab_group(x, language = get_AMR_locale(), ...)
ab_atc(x, only_first = FALSE, ...) ab_atc(x, only_first = FALSE, ...)
ab_atc_group1(x, language = get_locale(), ...) ab_atc_group1(x, language = get_AMR_locale(), ...)
ab_atc_group2(x, language = get_locale(), ...) ab_atc_group2(x, language = get_AMR_locale(), ...)
ab_loinc(x, ...) ab_loinc(x, ...)
@ -41,24 +41,24 @@ ab_ddd(x, administration = "oral", ...)
ab_ddd_units(x, administration = "oral", ...) ab_ddd_units(x, administration = "oral", ...)
ab_info(x, language = get_locale(), ...) ab_info(x, language = get_AMR_locale(), ...)
ab_url(x, open = FALSE, ...) ab_url(x, open = FALSE, ...)
ab_property(x, property = "name", language = get_locale(), ...) ab_property(x, property = "name", language = get_AMR_locale(), ...)
set_ab_names( set_ab_names(
data, data,
..., ...,
property = "name", property = "name",
language = get_locale(), language = get_AMR_locale(),
snake_case = NULL snake_case = NULL
) )
} }
\arguments{ \arguments{
\item{x}{any (vector of) text that can be coerced to a valid antibiotic code with \code{\link[=as.ab]{as.ab()}}} \item{x}{any (vector of) text that can be coerced to a valid antibiotic code with \code{\link[=as.ab]{as.ab()}}}
\item{language}{language of the returned text, defaults to system language (see \code{\link[=get_locale]{get_locale()}}) and can also be set with \code{getOption("AMR_locale")}. Use \code{language = NULL} or \code{language = ""} to prevent translation.} \item{language}{language of the returned text, defaults to system language (see \code{\link[=get_AMR_locale]{get_AMR_locale()}}) and can also be set with \code{getOption("AMR_locale")}. Use \code{language = NULL} or \code{language = ""} to prevent translation.}
\item{tolower}{a \link{logical} to indicate whether the first \link{character} of every output should be transformed to a lower case \link{character}. This will lead to e.g. "polymyxin B" and not "polymyxin b".} \item{tolower}{a \link{logical} to indicate whether the first \link{character} of every output should be transformed to a lower case \link{character}. This will lead to e.g. "polymyxin B" and not "polymyxin b".}

4
man/as.mo.Rd
View File

@ -16,7 +16,7 @@ as.mo(
allow_uncertain = TRUE, allow_uncertain = TRUE,
reference_df = get_mo_source(), reference_df = get_mo_source(),
ignore_pattern = getOption("AMR_ignore_pattern"), ignore_pattern = getOption("AMR_ignore_pattern"),
language = get_locale(), language = get_AMR_locale(),
info = interactive(), info = interactive(),
... ...
) )
@ -46,7 +46,7 @@ This excludes \emph{Enterococci} at default (who are in group D), use \code{Lanc
\item{ignore_pattern}{a regular expression (case-insensitive) of which all matches in \code{x} must return \code{NA}. This can be convenient to exclude known non-relevant input and can also be set with the option \code{AMR_ignore_pattern}, e.g. \code{options(AMR_ignore_pattern = "(not reported|contaminated flora)")}.} \item{ignore_pattern}{a regular expression (case-insensitive) of which all matches in \code{x} must return \code{NA}. This can be convenient to exclude known non-relevant input and can also be set with the option \code{AMR_ignore_pattern}, e.g. \code{options(AMR_ignore_pattern = "(not reported|contaminated flora)")}.}
\item{language}{language to translate text like "no growth", which defaults to the system language (see \code{\link[=get_locale]{get_locale()}})} \item{language}{language to translate text like "no growth", which defaults to the system language (see \code{\link[=get_AMR_locale]{get_AMR_locale()}})}
\item{info}{a \link{logical} to indicate if a progress bar should be printed if more than 25 items are to be coerced, defaults to \code{TRUE} only in interactive mode} \item{info}{a \link{logical} to indicate if a progress bar should be printed if more than 25 items are to be coerced, defaults to \code{TRUE} only in interactive mode}

4
man/bug_drug_combinations.Rd
View File

@ -13,7 +13,7 @@ bug_drug_combinations(x, col_mo = NULL, FUN = mo_shortname, ...)
\method{format}{bug_drug_combinations}( \method{format}{bug_drug_combinations}(
x, x,
translate_ab = "name (ab, atc)", translate_ab = "name (ab, atc)",
language = get_locale(), language = get_AMR_locale(),
minimum = 30, minimum = 30,
combine_SI = TRUE, combine_SI = TRUE,
combine_IR = FALSE, combine_IR = FALSE,
@ -35,7 +35,7 @@ bug_drug_combinations(x, col_mo = NULL, FUN = mo_shortname, ...)
\item{translate_ab}{a \link{character} of length 1 containing column names of the \link{antibiotics} data set} \item{translate_ab}{a \link{character} of length 1 containing column names of the \link{antibiotics} data set}
\item{language}{language of the returned text, defaults to system language (see \code{\link[=get_locale]{get_locale()}}) and can also be set with \code{getOption("AMR_locale")}. Use \code{language = NULL} or \code{language = ""} to prevent translation.} \item{language}{language of the returned text, defaults to system language (see \code{\link[=get_AMR_locale]{get_AMR_locale()}}) and can also be set with \code{getOption("AMR_locale")}. Use \code{language = NULL} or \code{language = ""} to prevent translation.}
\item{minimum}{the minimum allowed number of available (tested) isolates. Any isolate count lower than \code{minimum} will return \code{NA} with a warning. The default number of \code{30} isolates is advised by the Clinical and Laboratory Standards Institute (CLSI) as best practice, see \emph{Source}.} \item{minimum}{the minimum allowed number of available (tested) isolates. Any isolate count lower than \code{minimum} will return \code{NA} with a warning. The default number of \code{30} isolates is advised by the Clinical and Laboratory Standards Institute (CLSI) as best practice, see \emph{Source}.}

4
man/count.Rd
View File

@ -35,7 +35,7 @@ n_rsi(..., only_all_tested = FALSE)
count_df( count_df(
data, data,
translate_ab = "name", translate_ab = "name",
language = get_locale(), language = get_AMR_locale(),
combine_SI = TRUE, combine_SI = TRUE,
combine_IR = FALSE combine_IR = FALSE
) )
@ -49,7 +49,7 @@ count_df(
\item{translate_ab}{a column name of the \link{antibiotics} data set to translate the antibiotic abbreviations to, using \code{\link[=ab_property]{ab_property()}}} \item{translate_ab}{a column name of the \link{antibiotics} data set to translate the antibiotic abbreviations to, using \code{\link[=ab_property]{ab_property()}}}
\item{language}{language of the returned text, defaults to system language (see \code{\link[=get_locale]{get_locale()}}) and can also be set with \code{getOption("AMR_locale")}. Use \code{language = NULL} or \code{language = ""} to prevent translation.} \item{language}{language of the returned text, defaults to system language (see \code{\link[=get_AMR_locale]{get_AMR_locale()}}) and can also be set with \code{getOption("AMR_locale")}. Use \code{language = NULL} or \code{language = ""} to prevent translation.}
\item{combine_SI}{a \link{logical} to indicate whether all values of S and I must be merged into one, so the output only consists of S+I vs. R (susceptible vs. resistant). This used to be the argument \code{combine_IR}, but this now follows the redefinition by EUCAST about the interpretation of I (increased exposure) in 2019, see section 'Interpretation of S, I and R' below. Default is \code{TRUE}.} \item{combine_SI}{a \link{logical} to indicate whether all values of S and I must be merged into one, so the output only consists of S+I vs. R (susceptible vs. resistant). This used to be the argument \code{combine_IR}, but this now follows the redefinition by EUCAST about the interpretation of I (increased exposure) in 2019, see section 'Interpretation of S, I and R' below. Default is \code{TRUE}.}

8
man/ggplot_rsi.Rd
View File

@ -22,7 +22,7 @@ ggplot_rsi(
combine_SI = TRUE, combine_SI = TRUE,
combine_IR = FALSE, combine_IR = FALSE,
minimum = 30, minimum = 30,
language = get_locale(), language = get_AMR_locale(),
nrow = NULL, nrow = NULL,
colours = c(S = "#3CAEA3", SI = "#3CAEA3", I = "#F6D55C", IR = "#ED553B", R = colours = c(S = "#3CAEA3", SI = "#3CAEA3", I = "#F6D55C", IR = "#ED553B", R =
"#ED553B"), "#ED553B"),
@ -43,7 +43,7 @@ geom_rsi(
fill = "interpretation", fill = "interpretation",
translate_ab = "name", translate_ab = "name",
minimum = 30, minimum = 30,
language = get_locale(), language = get_AMR_locale(),
combine_SI = TRUE, combine_SI = TRUE,
combine_IR = FALSE, combine_IR = FALSE,
... ...
@ -62,7 +62,7 @@ labels_rsi_count(
x = "antibiotic", x = "antibiotic",
translate_ab = "name", translate_ab = "name",
minimum = 30, minimum = 30,
language = get_locale(), language = get_AMR_locale(),
combine_SI = TRUE, combine_SI = TRUE,
combine_IR = FALSE, combine_IR = FALSE,
datalabels.size = 3, datalabels.size = 3,
@ -92,7 +92,7 @@ labels_rsi_count(
\item{minimum}{the minimum allowed number of available (tested) isolates. Any isolate count lower than \code{minimum} will return \code{NA} with a warning. The default number of \code{30} isolates is advised by the Clinical and Laboratory Standards Institute (CLSI) as best practice, see \emph{Source}.} \item{minimum}{the minimum allowed number of available (tested) isolates. Any isolate count lower than \code{minimum} will return \code{NA} with a warning. The default number of \code{30} isolates is advised by the Clinical and Laboratory Standards Institute (CLSI) as best practice, see \emph{Source}.}
\item{language}{language of the returned text, defaults to system language (see \code{\link[=get_locale]{get_locale()}}) and can also be set with \code{getOption("AMR_locale")}. Use \code{language = NULL} or \code{language = ""} to prevent translation.} \item{language}{language of the returned text, defaults to system language (see \code{\link[=get_AMR_locale]{get_AMR_locale()}}) and can also be set with \code{getOption("AMR_locale")}. Use \code{language = NULL} or \code{language = ""} to prevent translation.}
\item{nrow}{(when using \code{facet}) number of rows} \item{nrow}{(when using \code{facet}) number of rows}

60
man/mo_property.Rd
View File

@ -32,68 +32,68 @@
\alias{mo_url} \alias{mo_url}
\title{Get Properties of a Microorganism} \title{Get Properties of a Microorganism}
\usage{ \usage{
mo_name(x, language = get_locale(), ...) mo_name(x, language = get_AMR_locale(), ...)
mo_fullname(x, language = get_locale(), ...) mo_fullname(x, language = get_AMR_locale(), ...)
mo_shortname(x, language = get_locale(), ...) mo_shortname(x, language = get_AMR_locale(), ...)
mo_subspecies(x, language = get_locale(), ...) mo_subspecies(x, language = get_AMR_locale(), ...)
mo_species(x, language = get_locale(), ...) mo_species(x, language = get_AMR_locale(), ...)
mo_genus(x, language = get_locale(), ...) mo_genus(x, language = get_AMR_locale(), ...)
mo_family(x, language = get_locale(), ...) mo_family(x, language = get_AMR_locale(), ...)
mo_order(x, language = get_locale(), ...) mo_order(x, language = get_AMR_locale(), ...)
mo_class(x, language = get_locale(), ...) mo_class(x, language = get_AMR_locale(), ...)
mo_phylum(x, language = get_locale(), ...) mo_phylum(x, language = get_AMR_locale(), ...)
mo_kingdom(x, language = get_locale(), ...) mo_kingdom(x, language = get_AMR_locale(), ...)
mo_domain(x, language = get_locale(), ...) mo_domain(x, language = get_AMR_locale(), ...)
mo_type(x, language = get_locale(), ...) mo_type(x, language = get_AMR_locale(), ...)
mo_gramstain(x, language = get_locale(), ...) mo_gramstain(x, language = get_AMR_locale(), ...)
mo_is_gram_negative(x, language = get_locale(), ...) mo_is_gram_negative(x, language = get_AMR_locale(), ...)
mo_is_gram_positive(x, language = get_locale(), ...) mo_is_gram_positive(x, language = get_AMR_locale(), ...)
mo_is_yeast(x, language = get_locale(), ...) mo_is_yeast(x, language = get_AMR_locale(), ...)
mo_is_intrinsic_resistant(x, ab, language = get_locale(), ...) mo_is_intrinsic_resistant(x, ab, language = get_AMR_locale(), ...)
mo_snomed(x, language = get_locale(), ...) mo_snomed(x, language = get_AMR_locale(), ...)
mo_ref(x, language = get_locale(), ...) mo_ref(x, language = get_AMR_locale(), ...)
mo_authors(x, language = get_locale(), ...) mo_authors(x, language = get_AMR_locale(), ...)
mo_year(x, language = get_locale(), ...) mo_year(x, language = get_AMR_locale(), ...)
mo_lpsn(x, language = get_locale(), ...) mo_lpsn(x, language = get_AMR_locale(), ...)
mo_rank(x, language = get_locale(), ...) mo_rank(x, language = get_AMR_locale(), ...)
mo_taxonomy(x, language = get_locale(), ...) mo_taxonomy(x, language = get_AMR_locale(), ...)
mo_synonyms(x, language = get_locale(), ...) mo_synonyms(x, language = get_AMR_locale(), ...)
mo_info(x, language = get_locale(), ...) mo_info(x, language = get_AMR_locale(), ...)
mo_url(x, open = FALSE, language = get_locale(), ...) mo_url(x, open = FALSE, language = get_AMR_locale(), ...)
mo_property(x, property = "fullname", language = get_locale(), ...) mo_property(x, property = "fullname", language = get_AMR_locale(), ...)
} }
\arguments{ \arguments{
\item{x}{any \link{character} (vector) that can be coerced to a valid microorganism code with \code{\link[=as.mo]{as.mo()}}. Can be left blank for auto-guessing the column containing microorganism codes if used in a data set, see \emph{Examples}.} \item{x}{any \link{character} (vector) that can be coerced to a valid microorganism code with \code{\link[=as.mo]{as.mo()}}. Can be left blank for auto-guessing the column containing microorganism codes if used in a data set, see \emph{Examples}.}
\item{language}{language of the returned text, defaults to system language (see \code{\link[=get_locale]{get_locale()}}) and can be overwritten by setting the option \code{AMR_locale}, e.g. \code{options(AMR_locale = "de")}, see \link{translate}. Also used to translate text like "no growth". Use \code{language = NULL} or \code{language = ""} to prevent translation.} \item{language}{language of the returned text, defaults to system language (see \code{\link[=get_AMR_locale]{get_AMR_locale()}}) and can be overwritten by setting the option \code{AMR_locale}, e.g. \code{options(AMR_locale = "de")}, see \link{translate}. Also used to translate text like "no growth". Use \code{language = NULL} or \code{language = ""} to prevent translation.}
\item{...}{other arguments passed on to \code{\link[=as.mo]{as.mo()}}, such as 'allow_uncertain' and 'ignore_pattern'} \item{...}{other arguments passed on to \code{\link[=as.mo]{as.mo()}}, such as 'allow_uncertain' and 'ignore_pattern'}

12
man/plot.Rd
View File

@ -22,7 +22,7 @@
ylab = "Frequency", ylab = "Frequency",
xlab = "Minimum Inhibitory Concentration (mg/L)", xlab = "Minimum Inhibitory Concentration (mg/L)",
colours_RSI = c("#ED553B", "#3CAEA3", "#F6D55C"), colours_RSI = c("#ED553B", "#3CAEA3", "#F6D55C"),
language = get_locale(), language = get_AMR_locale(),
expand = TRUE, expand = TRUE,
... ...
) )
@ -36,7 +36,7 @@
ylab = "Frequency", ylab = "Frequency",
xlab = "Minimum Inhibitory Concentration (mg/L)", xlab = "Minimum Inhibitory Concentration (mg/L)",
colours_RSI = c("#ED553B", "#3CAEA3", "#F6D55C"), colours_RSI = c("#ED553B", "#3CAEA3", "#F6D55C"),
language = get_locale(), language = get_AMR_locale(),
expand = TRUE, expand = TRUE,
... ...
) )
@ -52,7 +52,7 @@
ab = NULL, ab = NULL,
guideline = "EUCAST", guideline = "EUCAST",
colours_RSI = c("#ED553B", "#3CAEA3", "#F6D55C"), colours_RSI = c("#ED553B", "#3CAEA3", "#F6D55C"),
language = get_locale(), language = get_AMR_locale(),
expand = TRUE, expand = TRUE,
... ...
) )
@ -66,7 +66,7 @@
xlab = "Disk diffusion diameter (mm)", xlab = "Disk diffusion diameter (mm)",
guideline = "EUCAST", guideline = "EUCAST",
colours_RSI = c("#ED553B", "#3CAEA3", "#F6D55C"), colours_RSI = c("#ED553B", "#3CAEA3", "#F6D55C"),
language = get_locale(), language = get_AMR_locale(),
expand = TRUE, expand = TRUE,
... ...
) )
@ -87,7 +87,7 @@
xlab = "Antimicrobial Interpretation", xlab = "Antimicrobial Interpretation",
ylab = "Frequency", ylab = "Frequency",
colours_RSI = c("#ED553B", "#3CAEA3", "#F6D55C"), colours_RSI = c("#ED553B", "#3CAEA3", "#F6D55C"),
language = get_locale(), language = get_AMR_locale(),
... ...
) )
@ -108,7 +108,7 @@
\item{colours_RSI}{colours to use for filling in the bars, must be a vector of three values (in the order R, S and I). The default colours are colour-blind friendly.} \item{colours_RSI}{colours to use for filling in the bars, must be a vector of three values (in the order R, S and I). The default colours are colour-blind friendly.}
\item{language}{language to be used to translate 'Susceptible', 'Increased exposure'/'Intermediate' and 'Resistant', defaults to system language (see \code{\link[=get_locale]{get_locale()}}) and can be overwritten by setting the option \code{AMR_locale}, e.g. \code{options(AMR_locale = "de")}, see \link{translate}. Use \code{language = NULL} or \code{language = ""} to prevent translation.} \item{language}{language to be used to translate 'Susceptible', 'Increased exposure'/'Intermediate' and 'Resistant', defaults to system language (see \code{\link[=get_AMR_locale]{get_AMR_locale()}}) and can be overwritten by setting the option \code{AMR_locale}, e.g. \code{options(AMR_locale = "de")}, see \link{translate}. Use \code{language = NULL} or \code{language = ""} to prevent translation.}
\item{expand}{a \link{logical} to indicate whether the range on the x axis should be expanded between the lowest and highest value. For MIC values, intermediate values will be factors of 2 starting from the highest MIC value. For disk diameters, the whole diameter range will be filled.} \item{expand}{a \link{logical} to indicate whether the range on the x axis should be expanded between the lowest and highest value. For MIC values, intermediate values will be factors of 2 starting from the highest MIC value. For disk diameters, the whole diameter range will be filled.}

6
man/proportion.Rd
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@ -34,7 +34,7 @@ proportion_S(..., minimum = 30, as_percent = FALSE, only_all_tested = FALSE)
proportion_df( proportion_df(
data, data,
translate_ab = "name", translate_ab = "name",
language = get_locale(), language = get_AMR_locale(),
minimum = 30, minimum = 30,
as_percent = FALSE, as_percent = FALSE,
combine_SI = TRUE, combine_SI = TRUE,
@ -44,7 +44,7 @@ proportion_df(
rsi_df( rsi_df(
data, data,
translate_ab = "name", translate_ab = "name",
language = get_locale(), language = get_AMR_locale(),
minimum = 30, minimum = 30,
as_percent = FALSE, as_percent = FALSE,
combine_SI = TRUE, combine_SI = TRUE,
@ -64,7 +64,7 @@ rsi_df(
\item{translate_ab}{a column name of the \link{antibiotics} data set to translate the antibiotic abbreviations to, using \code{\link[=ab_property]{ab_property()}}} \item{translate_ab}{a column name of the \link{antibiotics} data set to translate the antibiotic abbreviations to, using \code{\link[=ab_property]{ab_property()}}}
\item{language}{language of the returned text, defaults to system language (see \code{\link[=get_locale]{get_locale()}}) and can also be set with \code{getOption("AMR_locale")}. Use \code{language = NULL} or \code{language = ""} to prevent translation.} \item{language}{language of the returned text, defaults to system language (see \code{\link[=get_AMR_locale]{get_AMR_locale()}}) and can also be set with \code{getOption("AMR_locale")}. Use \code{language = NULL} or \code{language = ""} to prevent translation.}
\item{combine_SI}{a \link{logical} to indicate whether all values of S and I must be merged into one, so the output only consists of S+I vs. R (susceptible vs. resistant). This used to be the argument \code{combine_IR}, but this now follows the redefinition by EUCAST about the interpretation of I (increased exposure) in 2019, see section 'Interpretation of S, I and R' below. Default is \code{TRUE}.} \item{combine_SI}{a \link{logical} to indicate whether all values of S and I must be merged into one, so the output only consists of S+I vs. R (susceptible vs. resistant). This used to be the argument \code{combine_IR}, but this now follows the redefinition by EUCAST about the interpretation of I (increased exposure) in 2019, see section 'Interpretation of S, I and R' below. Default is \code{TRUE}.}

14
man/translate.Rd
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@ -2,10 +2,10 @@
% Please edit documentation in R/translate.R % Please edit documentation in R/translate.R
\name{translate} \name{translate}
\alias{translate} \alias{translate}
\alias{get_locale} \alias{get_AMR_locale}
\title{Translate Strings from AMR Package} \title{Translate Strings from AMR Package}
\usage{ \usage{
get_locale() get_AMR_locale()
} }
\description{ \description{
For language-dependent output of AMR functions, like \code{\link[=mo_name]{mo_name()}}, \code{\link[=mo_gramstain]{mo_gramstain()}}, \code{\link[=mo_type]{mo_type()}} and \code{\link[=ab_name]{ab_name()}}. For language-dependent output of AMR functions, like \code{\link[=mo_name]{mo_name()}}, \code{\link[=mo_gramstain]{mo_gramstain()}}, \code{\link[=mo_type]{mo_type()}} and \code{\link[=ab_name]{ab_name()}}.
@ -13,7 +13,7 @@ For language-dependent output of AMR functions, like \code{\link[=mo_name]{mo_na
\details{ \details{
Strings will be translated to foreign languages if they are defined in a local translation file. Additions to this file can be suggested at our repository. The file can be found here: \url{https://github.com/msberends/AMR/blob/main/data-raw/translations.tsv}. This file will be read by all functions where a translated output can be desired, like all \code{\link[=mo_property]{mo_*}} functions (such as \code{\link[=mo_name]{mo_name()}}, \code{\link[=mo_gramstain]{mo_gramstain()}}, \code{\link[=mo_type]{mo_type()}}, etc.) and \code{\link[=ab_property]{ab_*}} functions (such as \code{\link[=ab_name]{ab_name()}}, \code{\link[=ab_group]{ab_group()}}, etc.). Strings will be translated to foreign languages if they are defined in a local translation file. Additions to this file can be suggested at our repository. The file can be found here: \url{https://github.com/msberends/AMR/blob/main/data-raw/translations.tsv}. This file will be read by all functions where a translated output can be desired, like all \code{\link[=mo_property]{mo_*}} functions (such as \code{\link[=mo_name]{mo_name()}}, \code{\link[=mo_gramstain]{mo_gramstain()}}, \code{\link[=mo_type]{mo_type()}}, etc.) and \code{\link[=ab_property]{ab_*}} functions (such as \code{\link[=ab_name]{ab_name()}}, \code{\link[=ab_group]{ab_group()}}, etc.).
Currently supported languages are: Danish, Dutch, English, French, German, Italian, Portuguese and Spanish. All these languages have translations available for all antimicrobial agents and colloquial microorganism names. Currently supported languages are: Danish, Dutch, English, French, German, Italian, Portuguese, Russian, Spanish and Swedish. All these languages have translations available for all antimicrobial agents and colloquial microorganism names.
Please suggest your own translations \href{https://github.com/msberends/AMR/issues/new?title=Translations}{by creating a new issue on our repository}. Please suggest your own translations \href{https://github.com/msberends/AMR/issues/new?title=Translations}{by creating a new issue on our repository}.
\subsection{Changing the Default Language}{ \subsection{Changing the Default Language}{
@ -24,7 +24,7 @@ The system language will be used at default (as returned by \code{Sys.getenv("LA
\item Setting the system variable \code{LANGUAGE} or \code{LANG}, e.g. by adding \code{LANGUAGE="de_DE.utf8"} to your \code{.Renviron} file in your home directory \item Setting the system variable \code{LANGUAGE} or \code{LANG}, e.g. by adding \code{LANGUAGE="de_DE.utf8"} to your \code{.Renviron} file in your home directory
} }
So if the R option \code{AMR_locale} is set, the system variables \code{LANGUAGE} and \code{LANG} will be ignored. Thus, if the R option \code{AMR_locale} is set, the system variables \code{LANGUAGE} and \code{LANG} will be ignored.
} }
} }
\section{Stable Lifecycle}{ \section{Stable Lifecycle}{
@ -43,15 +43,15 @@ On our website \url{https://msberends.github.io/AMR/} you can find \href{https:/
\examples{ \examples{
# The 'language' argument of below functions # The 'language' argument of below functions
# will be set automatically to your system language # will be set automatically to your system language
# with get_locale() # with get_AMR_locale()
# English # English
mo_name("CoNS", language = "en") mo_name("CoNS", language = "en")
#> "Coagulase-negative Staphylococcus (CoNS)" #> "Coagulase-negative Staphylococcus (CoNS)"
# Danish # Danish
mo_name("CoNS", language = "nl") mo_name("CoNS", language = "da")
#> "Koagulase-negative stafylokokker (CoNS)" #> "Koagulase-negative stafylokokker (KNS)"
# Dutch # Dutch
mo_name("CoNS", language = "nl") mo_name("CoNS", language = "nl")

4
pkgdown/extra.js
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} }
$(".template-authors").html(doct_tit($(".template-authors").html())); $(".template-authors").html(doct_tit($(".template-authors").html()));
$(".template-citation-authors").html(doct_tit($(".template-citation-authors").html())); $(".template-citation-authors").html(doct_tit($(".template-citation-authors").html()));
$('.template-citation-authors h1').eq(0).html("How to cite the <code>AMR</code> package"); $('.template-citation-authors h1').eq(0).html("All contributors of the <code>AMR</code> package");
$('.template-citation-authors h1').eq(1).html("All contributors of the <code>AMR</code> package"); $('.template-citation-authors h1').eq(1).html("How to cite the <code>AMR</code> package");
$(".developers").html(doct_tit($(".developers").html())); $(".developers").html(doct_tit($(".developers").html()));
$(".developers a[href='authors.html']").text("All contributors..."); $(".developers a[href='authors.html']").text("All contributors...");
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`AMR` is a free, open-source and independent R package (see [Copyright](https://msberends.github.io/AMR/#copyright)) to simplify the analysis and prediction of Antimicrobial Resistance (AMR) and to work with microbial and antimicrobial data and properties, by using evidence-based methods. **Our aim is to provide a standard** for clean and reproducible antimicrobial resistance data analysis, that can therefore empower epidemiological analyses to continuously enable surveillance and treatment evaluation in any setting. `AMR` is a free, open-source and independent R package (see [Copyright](https://msberends.github.io/AMR/#copyright)) to simplify the analysis and prediction of Antimicrobial Resistance (AMR) and to work with microbial and antimicrobial data and properties, by using evidence-based methods. **Our aim is to provide a standard** for clean and reproducible antimicrobial resistance data analysis, that can therefore empower epidemiological analyses to continuously enable surveillance and treatment evaluation in any setting.
After installing this package, R knows `r AMR:::format_included_data_number(AMR::microorganisms)` distinct microbial species and all `r AMR:::format_included_data_number(rbind(AMR::antibiotics[, "atc", drop = FALSE], AMR::antivirals[, "atc", drop = FALSE]))` antibiotic, antimycotic and antiviral drugs by name and code (including ATC, EARS-Net, PubChem, LOINC and SNOMED CT), and knows all about valid R/SI and MIC values. It supports any data format, including WHONET/EARS-Net data. Antimicrobial names and group names are available in Danish, Dutch, English, French, German, Italian, Portuguese and Spanish. After installing this package, R knows `r AMR:::format_included_data_number(AMR::microorganisms)` distinct microbial species and all `r AMR:::format_included_data_number(rbind(AMR::antibiotics[, "atc", drop = FALSE], AMR::antivirals[, "atc", drop = FALSE]))` antibiotic, antimycotic and antiviral drugs by name and code (including ATC, EARS-Net, PubChem, LOINC and SNOMED CT), and knows all about valid R/SI and MIC values. It supports any data format, including WHONET/EARS-Net data.
The `AMR` package is available in Danish, Dutch, English, French, German, Italian, Portuguese, Russian, Spanish and Swedish. Antimicrobial drug (group) names and colloquial microorganism names are provided in these languages.
This package is fully independent of any other R package and works on Windows, macOS and Linux with all versions of R since R-3.0 (April 2013). **It was designed to work in any setting, including those with very limited resources**. Since its first public release in early 2018, this package has been downloaded from more than 175 countries. This package is fully independent of any other R package and works on Windows, macOS and Linux with all versions of R since R-3.0 (April 2013). **It was designed to work in any setting, including those with very limited resources**. Since its first public release in early 2018, this package has been downloaded from more than 175 countries.