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(v1.7.1.9070) Better WHONET support

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dr. M.S. (Matthijs) Berends
2021-12-13 10:18:28 +01:00
parent f90e27c1b0
commit 578e7dfee9
74 changed files with 20758 additions and 47402 deletions
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data-raw/reproduction_of_intrinsic_resistant.R
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@@ -42,7 +42,7 @@ int_resis2 <- int_resis[, sapply(int_resis, function(x) any(!is.rsi(x) | x == "R
select(microorganism, antibiotic = name)
# remove lab drugs
untreatable <- antibiotics[which(antibiotics$name %like% "-high|EDTA|polysorbate|macromethod|screening"), "name", drop = TRUE]
untreatable <- antibiotics[which(antibiotics$name %like% "-high|EDTA|polysorbate|macromethod|screening|/nacubactam"), "name", drop = TRUE]
int_resis2 <- int_resis2 %>%
filter(!antibiotic %in% untreatable) %>%
arrange(microorganism, antibiotic)