P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-12 11:42:00 +02:00
Code Releases Activity

is.rsi.eligible update

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2019-02-04 12:24:07 +01:00
parent cd07d65734
commit 587e00b7be
25 changed files with 1115 additions and 491 deletions
Download Patch File Download Diff File Expand all files Collapse all files

4
man/WHONET.Rd
View File

@ -8,7 +8,7 @@
\describe{
\item{\code{Identification number}}{ID of the sample}
\item{\code{Specimen number}}{ID of the specimen}
\item{\code{Organism}}{Microorganisms, can be coerced with \code{\link{as.mo}}}
\item{\code{Organism}}{Name of the microorganism. Before analysis, you should transform this to a valid microbial class, using \code{\link{as.mo}}.}
\item{\code{Country}}{Country of origin}
\item{\code{Laboratory}}{Name of laboratory}
\item{\code{Last name}}{Last name of patient}
@ -31,7 +31,7 @@
\item{\code{Inducible clindamycin resistance}}{Clindamycin can be induced?}
\item{\code{Comment}}{Other comments}
\item{\code{Date of data entry}}{Date this data was entered in WHONET}
\item{\code{AMP_ND10:CIP_EE}}{27 different antibiotics. You can lookup the abbreviatons in the \code{\link{antibiotics}} data set, or use e.g. \code{\link{atc_name}("AMP")} to get the official name immediately.}
\item{\code{AMP_ND10:CIP_EE}}{27 different antibiotics. You can lookup the abbreviatons in the \code{\link{antibiotics}} data set, or use e.g. \code{\link{atc_name}("AMP")} to get the official name immediately. Before analysis, you should transform this to a valid antibiotic class, using \code{\link{as.rsi}}.}
}}
\usage{
WHONET