(v2.1.1.9199) fix eucast

2025-07-09 09:31:58 +02:00 · 2025-03-14 13:43:22 +01:00
parent e134e01418
commit 58d7aa8790
57 changed files with 143 additions and 122 deletions
--- a/_pkgdown.yml
+++ b/_pkgdown.yml
@ -65,72 +65,70 @@ home:
    structure: [toc, links, authors]

 navbar:
-  title: "AMR (for R)"
-  left:
-    # - text: "Home"
-    #   icon: "fa-home"
-    #   href: "index.html"
-    - text: "How to"
-      icon: "fa-question-circle"
-      menu:
-      - text: "Conduct AMR Analysis"
-        icon: "fa-directions"
-        href: "articles/AMR.html"
-      - text: "Generate Antibiogram (Trad./Syndromic/WISCA)"
-        icon: "fa-file-prescription"
-        href: "reference/antibiogram.html" # reference instead of an article
-      - text: "Predict Antimicrobial Resistance"
-        icon: "fa-dice"
-        href: "articles/resistance_predict.html"
-      - text: "Download Data Sets for Own Use"
-        icon: "fa-database"
-        href: "articles/datasets.html"
-      - text: "Use AMR for Predictive Modelling (tidymodels)"
-        icon: "fa-square-root-variable"
-        href: "articles/AMR_with_tidymodels.html"
-      - text: "Set User- Or Team-specific Package Settings"
-        icon: "fa-gear"
-        href: "reference/AMR-options.html"
-      - text: "Conduct Principal Component Analysis for AMR"
-        icon: "fa-compress"
-        href: "articles/PCA.html"
-      - text: "Determine Multi-Drug Resistance (MDR)"
-        icon: "fa-skull-crossbones"
-        href: "articles/MDR.html"
-      - text: "Work with WHONET Data"
-        icon: "fa-globe-americas"
-        href: "articles/WHONET.html"
-      # - text: "Import Data From SPSS/Stata"
-      #   icon: "fa-file-upload"
-      #   href: "articles/SPSS.html"
-      - text: "Apply Eucast Rules"
-        icon: "fa-exchange-alt"
-        href: "articles/EUCAST.html"
-      - text: "Get Taxonomy of a Microorganism"
-        icon: "fa-bug"
-        href: "reference/mo_property.html" # reference instead of an article
-      - text: "Get Properties of an Antibiotic Drug"
-        icon: "fa-capsules"
-        href: "reference/ab_property.html" # reference instead of an article
-      - text: "Get Properties of an Antiviral Drug"
-        icon: "fa-capsules"
-        href: "reference/av_property.html" # reference instead of an article
-    - text: "AMR for Python"
-      icon: "fab fa-python"
-      href: "articles/AMR_for_Python.html"
-    - text: "Manual"
-      icon: "fa-book-open"
-      href: "reference/index.html"
-    - text: "Authors"
-      icon: "fa-users"
-      href: "authors.html"
-  right:
-    - text: "Changelog"
-      icon: "far fa-newspaper"
-      href: "news/index.html"
-    - text: "Source Code"
-      icon: "fab fa-github"
-      href: "https://github.com/msberends/AMR"
+  structure:
+    title: "AMR (for R)"
+    left:
+      - text: "How to"
+        icon: "fa-question-circle"
+        menu:
+        - text: "Conduct AMR Analysis"
+          icon: "fa-directions"
+          href: "articles/AMR.html"
+        - text: "Generate Antibiogram (Trad./Syndromic/WISCA)"
+          icon: "fa-file-prescription"
+          href: "reference/antibiogram.html" # reference instead of an article
+        - text: "Predict Antimicrobial Resistance"
+          icon: "fa-dice"
+          href: "articles/resistance_predict.html"
+        - text: "Download Data Sets for Own Use"
+          icon: "fa-database"
+          href: "articles/datasets.html"
+        - text: "Use AMR for Predictive Modelling (tidymodels)"
+          icon: "fa-square-root-variable"
+          href: "articles/AMR_with_tidymodels.html"
+        - text: "Set User- Or Team-specific Package Settings"
+          icon: "fa-gear"
+          href: "reference/AMR-options.html"
+        - text: "Conduct Principal Component Analysis for AMR"
+          icon: "fa-compress"
+          href: "articles/PCA.html"
+        - text: "Determine Multi-Drug Resistance (MDR)"
+          icon: "fa-skull-crossbones"
+          href: "articles/MDR.html"
+        - text: "Work with WHONET Data"
+          icon: "fa-globe-americas"
+          href: "articles/WHONET.html"
+        - text: "Apply Eucast Rules"
+          icon: "fa-exchange-alt"
+          href: "articles/EUCAST.html"
+        - text: "Get Taxonomy of a Microorganism"
+          icon: "fa-bug"
+          href: "reference/mo_property.html" # reference instead of an article
+        - text: "Get Properties of an Antibiotic Drug"
+          icon: "fa-capsules"
+          href: "reference/ab_property.html" # reference instead of an article
+        - text: "Get Properties of an Antiviral Drug"
+          icon: "fa-capsules"
+          href: "reference/av_property.html" # reference instead of an article
+      - text: "AMR for Python"
+        icon: "fab fa-python"
+        href: "articles/AMR_for_Python.html"
+      - text: "Manual"
+        icon: "fa-book-open"
+        href: "reference/index.html"
+      - text: "Authors"
+        icon: "fa-users"
+        href: "authors.html"
+    right: [search, amrchangelog, amrgit]
+  components:
+    amrchangelog:
+      icon: fa-newspaper
+      href: news/index.html
+      aria-label: Changelog
+    amrgit:
+      icon: fa-github
+      href: https://github.com/msberends/AMR"
+      aria-label: Source Code

 reference:
  - title: "Introduction to the package"