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(v1.8.1.9008) website update
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@ -209,6 +209,27 @@ antivirals %>%
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print_df()
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```
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## Interpretation from MIC values / disk diameters to R/SI
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`r structure_txt(rsi_translation)`
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This data set is in R available as `rsi_translation`, after you load the `AMR` package.
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`r download_txt("rsi_translation")`
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### Source
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This data set contains interpretation rules for MIC values and disk diffusion diameters. Included guidelines are CLSI (`r min(as.integer(gsub("[^0-9]", "", subset(rsi_translation, guideline %like% "CLSI")$guideline)))`-`r max(as.integer(gsub("[^0-9]", "", subset(rsi_translation, guideline %like% "CLSI")$guideline)))`) and EUCAST (`r min(as.integer(gsub("[^0-9]", "", subset(rsi_translation, guideline %like% "EUCAST")$guideline)))`-`r max(as.integer(gsub("[^0-9]", "", subset(rsi_translation, guideline %like% "EUCAST")$guideline)))`).
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### Example content
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```{r, echo = FALSE}
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rsi_translation %>%
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mutate(mo_name = mo_name(mo, language = NULL), .after = mo) %>%
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mutate(ab_name = ab_name(ab, language = NULL), .after = ab) %>%
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print_df()
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```
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## Intrinsic bacterial resistance
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@ -231,31 +252,11 @@ intrinsic_resistant %>%
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transmute(microorganism = mo_name(mo),
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antibiotic = ab_name(ab)) %>%
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filter(microorganism == "Enterobacter cloacae") %>%
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arrange(antibiotic) %>%
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print_df(rows = Inf)
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```
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## Interpretation from MIC values / disk diameters to R/SI
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`r structure_txt(rsi_translation)`
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This data set is in R available as `rsi_translation`, after you load the `AMR` package.
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`r download_txt("rsi_translation")`
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### Source
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This data set contains interpretation rules for MIC values and disk diffusion diameters. Included guidelines are CLSI (`r min(as.integer(gsub("[^0-9]", "", subset(rsi_translation, guideline %like% "CLSI")$guideline)))`-`r max(as.integer(gsub("[^0-9]", "", subset(rsi_translation, guideline %like% "CLSI")$guideline)))`) and EUCAST (`r min(as.integer(gsub("[^0-9]", "", subset(rsi_translation, guideline %like% "EUCAST")$guideline)))`-`r max(as.integer(gsub("[^0-9]", "", subset(rsi_translation, guideline %like% "EUCAST")$guideline)))`).
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### Example content
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```{r, echo = FALSE}
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rsi_translation %>%
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mutate(ab = ab_name(ab), mo = mo_name(mo)) %>%
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print_df()
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```
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## Dosage guidelines from EUCAST
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`r structure_txt(dosage)`
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