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replaced bactid by mo

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dr. M.S. (Matthijs) Berends
2018-08-31 13:36:19 +02:00
parent 98ff131680
commit 5965d3c794
41 changed files with 786 additions and 411 deletions
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14
man/join.Rd
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@ -11,22 +11,22 @@
\alias{anti_join_microorganisms}
\title{Join a table with \code{microorganisms}}
\usage{
inner_join_microorganisms(x, by = "bactid", suffix = c("2", ""), ...)
inner_join_microorganisms(x, by = "mo", suffix = c("2", ""), ...)
left_join_microorganisms(x, by = "bactid", suffix = c("2", ""), ...)
left_join_microorganisms(x, by = "mo", suffix = c("2", ""), ...)
right_join_microorganisms(x, by = "bactid", suffix = c("2", ""), ...)
right_join_microorganisms(x, by = "mo", suffix = c("2", ""), ...)
full_join_microorganisms(x, by = "bactid", suffix = c("2", ""), ...)
full_join_microorganisms(x, by = "mo", suffix = c("2", ""), ...)
semi_join_microorganisms(x, by = "bactid", ...)
semi_join_microorganisms(x, by = "mo", ...)
anti_join_microorganisms(x, by = "bactid", ...)
anti_join_microorganisms(x, by = "mo", ...)
}
\arguments{
\item{x}{existing table to join, also supports character vectors}
\item{by}{a variable to join by - could be a column name of \code{x} with values that exist in \code{microorganisms$bactid} (like \code{by = "bacteria_id"}), or another column in \code{\link{microorganisms}} (but then it should be named, like \code{by = c("my_genus_species" = "fullname")})}
\item{by}{a variable to join by - could be a column name of \code{x} with values that exist in \code{microorganisms$mo} (like \code{by = "bacteria_id"}), or another column in \code{\link{microorganisms}} (but then it should be named, like \code{by = c("my_genus_species" = "fullname")})}
\item{suffix}{if there are non-joined duplicate variables in \code{x} and \code{y}, these suffixes will be added to the output to disambiguate them. Should be a character vector of length 2.}