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replaced bactid by mo

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dr. M.S. (Matthijs) Berends
2018-08-31 13:36:19 +02:00
parent 98ff131680
commit 5965d3c794
41 changed files with 786 additions and 411 deletions
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24
tests/testthat/test-deprecated.R Normal file
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context("deprecated.R")
test_that("deprecated functions work", {
expect_identical(is.mo(as.mo("esco")), suppressWarnings(is.bactid(as.bactid("esco"))))
expect_warning(identical(is.mo(as.mo("esco")), is.bactid(as.bactid("esco"))))
expect_identical(as.mo("esco"), suppressWarnings(guess_bactid("esco")))
expect_error(suppressWarnings(ratio("A")))
expect_error(suppressWarnings(ratio(1, ratio = "abc")))
expect_error(suppressWarnings(ratio(c(1, 2), ratio = c(1, 2, 3))))
expect_warning(ratio(c(772, 1611, 737), ratio = "1:2:1"))
expect_identical(suppressWarnings(ratio(c(772, 1611, 737), ratio = "1:2:1")), c(780, 1560, 780))
expect_identical(suppressWarnings(ratio(c(1752, 1895), ratio = c(1, 1))), c(1823.5, 1823.5))
old_mo <- "ESCCOL"
class(old_mo) <- "bactid"
# print
expect_output(print(old_mo))
# test data.frame and pull
expect_equal(as.character(dplyr::pull(data.frame(test = old_mo), test)), "ESCCOL")
})