diff --git a/.github/workflows/check.yaml b/.github/workflows/check.yaml index bc030010..6f0cd595 100644 --- a/.github/workflows/check.yaml +++ b/.github/workflows/check.yaml @@ -66,8 +66,8 @@ jobs: - {os: ubuntu-20.04, r: '3.5', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} - {os: ubuntu-20.04, r: '3.4', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} - {os: ubuntu-20.04, r: '3.3', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} - # - {os: ubuntu-20.04, r: '3.2', allowfail: true, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} - # - {os: ubuntu-20.04, r: '3.1', allowfail: true, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} + - {os: ubuntu-20.04, r: '3.2', allowfail: true, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} + - {os: ubuntu-20.04, r: '3.1', allowfail: true, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} - {os: ubuntu-20.04, r: '3.0', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} - {os: ubuntu-16.04, r: 'devel', allowfail: false, rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"} @@ -161,6 +161,7 @@ jobs: run: | tar -xf data-raw/AMR_latest.tar.gz rm -rf AMR/vignettes + Rscript -e "utils::installed.packages()" R CMD check AMR --no-manual --as-cran shell: bash @@ -168,7 +169,7 @@ jobs: if: always() run: | ls -lh - find check -name 'testthat.Rout*' -exec cat '{}' \; || true + find . -name 'testthat.Rout*' -exec cat '{}' \; || true shell: bash - name: Upload check results diff --git a/DESCRIPTION b/DESCRIPTION index 4178f1d3..274a3dd8 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,5 +1,5 @@ Package: AMR -Version: 1.6.0.9026 +Version: 1.6.0.9027 Date: 2021-05-13 Title: Antimicrobial Resistance Data Analysis Authors@R: c( diff --git a/NEWS.md b/NEWS.md index 82cff2bd..8cafac13 100755 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -# `AMR` 1.6.0.9026 +# `AMR` 1.6.0.9027 ## Last updated: 13 May 2021 ### New diff --git a/data-raw/AMR_latest.tar.gz b/data-raw/AMR_latest.tar.gz index 95d81af6..2b7fb842 100644 Binary files a/data-raw/AMR_latest.tar.gz and b/data-raw/AMR_latest.tar.gz differ diff --git a/docs/404.html b/docs/404.html index f0391d12..0de95077 100644 --- a/docs/404.html +++ b/docs/404.html @@ -81,7 +81,7 @@ AMR (for R) - 1.6.0.9026 + 1.6.0.9027 diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html index 20d64666..9f19f672 100644 --- a/docs/LICENSE-text.html +++ b/docs/LICENSE-text.html @@ -81,7 +81,7 @@ AMR (for R) - 1.6.0.9026 + 1.6.0.9027 diff --git a/docs/articles/index.html b/docs/articles/index.html index eaecbb28..9774790e 100644 --- a/docs/articles/index.html +++ b/docs/articles/index.html @@ -81,7 +81,7 @@ AMR (for R) - 1.6.0.9026 + 1.6.0.9027 diff --git a/docs/authors.html b/docs/authors.html index 8d416e49..9e8f75b5 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -81,7 +81,7 @@ AMR (for R) - 1.6.0.9026 + 1.6.0.9027 diff --git a/docs/index.html b/docs/index.html index a29c7eb3..142bce06 100644 --- a/docs/index.html +++ b/docs/index.html @@ -42,7 +42,7 @@ AMR (for R) - 1.6.0.9026 + 1.6.0.9027 diff --git a/docs/news/index.html b/docs/news/index.html index 82ca8a18..ce2edfdc 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -81,7 +81,7 @@ AMR (for R) - 1.6.0.9026 + 1.6.0.9027 @@ -236,9 +236,9 @@ Source: NEWS.md -
-

- Unreleased AMR 1.6.0.9026

+
+

+ Unreleased AMR 1.6.0.9027

Last updated: 13 May 2021 diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index b1e08e3f..105bfeb3 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -12,7 +12,7 @@ articles: datasets: datasets.html resistance_predict: resistance_predict.html welcome_to_AMR: welcome_to_AMR.html -last_built: 2021-05-13T19:15Z +last_built: 2021-05-13T19:35Z urls: reference: https://msberends.github.io/AMR//reference article: https://msberends.github.io/AMR//articles diff --git a/docs/reference/index.html b/docs/reference/index.html index 1d602ba6..c87dd6d3 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -81,7 +81,7 @@ AMR (for R) - 1.6.0.9026 + 1.6.0.9027

diff --git a/docs/survey.html b/docs/survey.html index 23412017..3368ca0c 100644 --- a/docs/survey.html +++ b/docs/survey.html @@ -81,7 +81,7 @@ AMR (for R) - 1.6.0.9026 + 1.6.0.9027