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(v2.1.1.9095) Python support

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dr. M.S. (Matthijs) Berends
2024-10-15 17:12:55 +02:00
parent 94501371cd
commit 5c4d8fcd2a
18 changed files with 513 additions and 435 deletions
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3
R/antibiogram.R
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@ -313,7 +313,8 @@ antibiogram <- function(x,
combine_SI = TRUE,
sep = " + ",
info = interactive()) {
meet_criteria(x, allow_class = "data.frame", contains_column_class = c("sir", "rsi"))
meet_criteria(x, allow_class = "data.frame")
x <- ascertain_sir_classes(x, "x")
meet_criteria(mo_transform, allow_class = "character", has_length = 1, is_in = c("name", "shortname", "gramstain", colnames(AMR::microorganisms)), allow_NULL = TRUE)
meet_criteria(ab_transform, allow_class = "character", has_length = 1, is_in = colnames(AMR::antibiotics), allow_NULL = TRUE)
meet_criteria(syndromic_group, allow_class = "character", allow_NULL = TRUE, allow_NA = TRUE)