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(v1.5.0.9021) improve speed of %like%

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dr. M.S. (Matthijs) Berends committed 2021-02-21 20:15:09 +01:00
1 parent daa12ced2c
commit 5ef8cb41a7
23 files changed
+137 -126
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R/eucast_rules.R
+4 -4
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@@ -896,7 +896,7 @@ eucast_rules <- function(x,
target_value <- eucast_rules_df[i, "to_value", drop = TRUE]
if (is.na(source_antibiotics)) {
rows <- tryCatch(which(x[, if_mo_property, drop = TRUE] %like_perl% mo_value),
rows <- tryCatch(which(x[, if_mo_property, drop = TRUE] %like% mo_value),
error = function(e) integer(0))
} else {
source_antibiotics <- get_antibiotic_columns(source_antibiotics, x)
@@ -906,17 +906,17 @@ eucast_rules <- function(x,
if (length(source_antibiotics) == 0) {
rows <- integer(0)
} else if (length(source_antibiotics) == 1) {
rows <- tryCatch(which(x[, if_mo_property, drop = TRUE] %like_perl% mo_value
rows <- tryCatch(which(x[, if_mo_property, drop = TRUE] %like% mo_value
& as.rsi_no_warning(x[, source_antibiotics[1L]]) == source_value[1L]),
error = function(e) integer(0))
} else if (length(source_antibiotics) == 2) {
rows <- tryCatch(which(x[, if_mo_property, drop = TRUE] %like_perl% mo_value
rows <- tryCatch(which(x[, if_mo_property, drop = TRUE] %like% mo_value
& as.rsi_no_warning(x[, source_antibiotics[1L]]) == source_value[1L]
& as.rsi_no_warning(x[, source_antibiotics[2L]]) == source_value[2L]),
error = function(e) integer(0))
# nolint start
# } else if (length(source_antibiotics) == 3) {
# rows <- tryCatch(which(x[, if_mo_property, drop = TRUE] %like_perl% mo_value
# rows <- tryCatch(which(x[, if_mo_property, drop = TRUE] %like% mo_value
# & as.rsi_no_warning(x[, source_antibiotics[1L]]) == source_value[1L]
# & as.rsi_no_warning(x[, source_antibiotics[2L]]) == source_value[2L]
# & as.rsi_no_warning(x[, source_antibiotics[3L]]) == source_value[3L]),