diff --git a/.github/workflows/check.yaml b/.github/workflows/check.yaml index df7ddcd9..07053e51 100644 --- a/.github/workflows/check.yaml +++ b/.github/workflows/check.yaml @@ -128,18 +128,6 @@ jobs: as.data.frame(utils::installed.packages())[, "Version", drop = FALSE] shell: Rscript {0} - # - name: Only keep vignettes on release version - - name: Remove vignettes - # if: matrix.config.r != 'release' - if: always() - # writing to DESCRIPTION2 and then moving to DESCRIPTION is required for R < 3.3 as writeLines() cannot overwrite - run: | - rm -rf AMR/vignettes - Rscript -e "writeLines(readLines('AMR/DESCRIPTION')[!grepl('VignetteBuilder', readLines('AMR/DESCRIPTION'))], 'AMR/DESCRIPTION2')" - rm AMR/DESCRIPTION - mv AMR/DESCRIPTION2 AMR/DESCRIPTION - shell: bash - - name: Run R CMD check if: always() env: diff --git a/DESCRIPTION b/DESCRIPTION index 573a6c00..27a19207 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: AMR -Version: 1.7.1.9038 -Date: 2021-09-01 +Version: 1.7.1.9039 +Date: 2021-09-03 Title: Antimicrobial Resistance Data Analysis Description: Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by diff --git a/NEWS.md b/NEWS.md index 29c592e8..295ae5fe 100755 --- a/NEWS.md +++ b/NEWS.md @@ -1,5 +1,5 @@ -# `AMR` 1.7.1.9038 -## Last updated: 1 September 2021 +# `AMR` 1.7.1.9039 +## Last updated: 3 September 2021 ### Breaking changes * Removed `p_symbol()` and all `filter_*()` functions (except for `filter_first_isolate()`), which were all deprecated in a previous package version diff --git a/data-raw/AMR_latest.tar.gz b/data-raw/AMR_latest.tar.gz index 77b33e0a..37a3fa0d 100644 Binary files a/data-raw/AMR_latest.tar.gz and b/data-raw/AMR_latest.tar.gz differ diff --git a/docs/articles/datasets.html b/docs/articles/datasets.html index f81cd642..6017af9c 100644 --- a/docs/articles/datasets.html +++ b/docs/articles/datasets.html @@ -44,7 +44,7 @@
@@ -190,7 +190,7 @@vignettes/datasets.Rmd
datasets.Rmd
A data set with 456 rows and 14 columns, containing the following column names:
ab, cid, name, group, atc, atc_group1, atc_group2, abbreviations, synonyms, oral_ddd, oral_units, iv_ddd, iv_units and loinc.
This data set is in R available as antibiotics
, after you load the AMR
package.
It was last updated on 19 August 2021 21:21:57 UTC. Find more info about the structure of this data set here.
+It was last updated on 2 September 2021 11:50:06 UTC. Find more info about the structure of this data set here.
Direct download links:
NEWS.md
- AMR
1.7.1.9038AMR
1.7.1.9039