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(v3.0.0.9019) Fixes #229, #230, #227, #225

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dr. M.S. (Matthijs) Berends
2025-09-01 16:56:55 +02:00
parent 9b07a8573a
commit 60bd631e1a
18 changed files with 51 additions and 68 deletions
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NEWS.md
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@@ -1,4 +1,4 @@
# AMR 3.0.0.9018
# AMR 3.0.0.9019
This is primarily a bugfix release, though we added one nice feature too.
@@ -15,11 +15,16 @@ This is primarily a bugfix release, though we added one nice feature too.
* Fixed a bug in `as.sir()` to allow any tidyselect language (#220)
* Fixed a bug in `as.sir()` to pick right breakpoint when `uti = FALSE` (#216)
* Fixed a bug in `ggplot_sir()` when using `combine_SI = FALSE` (#213)
* Fixed `mdro()` to contain all reasons in verbose output (#227)
* Fixed a bug the `antimicrobials` data set to remove statins (#229)
* Fixed a bug in `mdro()` to make sure all genes specified in arguments are acknowledges
* Fixed ATC J01CR05 to map to piperacillin/tazobactam rather than piperacillin/sulbactam (#230)
* Fixed all plotting to contain a separate colour for SDD (susceptible dose-dependent) (#223)
* Fixed some specific Dutch translations for antimicrobials
* Added all reasons in verbose output of `mdro()` (#227)
* Added `names` to `age_groups()` so that custom names can be given (#215)
* Added note to `as.sir()` to make it explicit when higher-level taxonomic breakpoints are used (#218)
* Added antibiotic codes from the Comprehensive Antibiotic Resistance Database (CARD) to the `antimicrobials` data set (#225)
* Updated Fosfomycin to be of antibiotic class 'Phosphonics' (#225)
* Updated `random_mic()` and `random_disk()` to set skewedness of the distribution and allow multiple microorganisms