P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-12 11:01:52 +02:00
Code Releases Activity

documentation

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2022-12-28 15:04:59 +01:00
parent ba3b237bdf
commit 61c0bdb7af
5 changed files with 9 additions and 6 deletions
Download Patch File Download Diff File Expand all files Collapse all files

4
man/add_custom_microorganisms.Rd
View File

@ -13,7 +13,7 @@ clear_custom_microorganisms()
\item{x}{a \link{data.frame} resembling the \link{microorganisms} data set, at least containing columns "genus" and "species"}
}
\description{
With \code{\link[=add_custom_microorganisms]{add_custom_microorganisms()}} you can add your own custom antimicrobial drug codes to the \code{AMR} package.
With \code{\link[=add_custom_microorganisms]{add_custom_microorganisms()}} you can add your own custom microorganisms to the \code{AMR} package, such the non-taxonomic outcome of laboratory analysis.
}
\details{
This function will fill in missing taxonomy for you, if specific taxonomic columns are missing, see \emph{Examples}.
@ -67,8 +67,10 @@ add_custom_microorganisms(
# E. asburiae/cloacae is now a new microorganism:
mo_name("Enterobacter asburiae/cloacae")
# its code:
as.mo("Enterobacter asburiae/cloacae")
# all internal algorithms will work as well:
mo_name("Ent asburia cloacae")