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@ -13,7 +13,7 @@ clear_custom_microorganisms()
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\item{x}{a \link{data.frame} resembling the \link{microorganisms} data set, at least containing columns "genus" and "species"}
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}
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\description{
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With \code{\link[=add_custom_microorganisms]{add_custom_microorganisms()}} you can add your own custom antimicrobial drug codes to the \code{AMR} package.
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With \code{\link[=add_custom_microorganisms]{add_custom_microorganisms()}} you can add your own custom microorganisms to the \code{AMR} package, such the non-taxonomic outcome of laboratory analysis.
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}
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\details{
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This function will fill in missing taxonomy for you, if specific taxonomic columns are missing, see \emph{Examples}.
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@ -67,8 +67,10 @@ add_custom_microorganisms(
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# E. asburiae/cloacae is now a new microorganism:
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mo_name("Enterobacter asburiae/cloacae")
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# its code:
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as.mo("Enterobacter asburiae/cloacae")
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# all internal algorithms will work as well:
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mo_name("Ent asburia cloacae")
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