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		| @@ -7,7 +7,7 @@ | ||||
|  | ||||
|     <a class="navbar-brand me-2" href="../index.html">AMR (for R)</a> | ||||
|  | ||||
|     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9216</small> | ||||
|     <small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9217</small> | ||||
|  | ||||
|  | ||||
|     <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation"> | ||||
| @@ -155,27 +155,27 @@ | ||||
| <span class="r-in"><span><span class="va">df</span> <span class="op"><-</span> <span class="va">example_isolates</span><span class="op">[</span><span class="fu"><a href="https://rdrr.io/r/base/sample.html" class="external-link">sample</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/seq.html" class="external-link">seq_len</a></span><span class="op">(</span><span class="fl">2000</span><span class="op">)</span>, size <span class="op">=</span> <span class="fl">100</span><span class="op">)</span>, <span class="op">]</span></span></span> | ||||
| <span class="r-in"><span></span></span> | ||||
| <span class="r-in"><span><span class="fu">get_episode</span><span class="op">(</span><span class="va">df</span><span class="op">$</span><span class="va">date</span>, episode_days <span class="op">=</span> <span class="fl">60</span><span class="op">)</span> <span class="co"># indices</span></span></span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>   [1]  1 12 40 46 27 46 46 47  1 47 13  7 37 27  5 14 48 13 22 30 18 27 21  6  8</span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>  [26]  6 38 13  5 11 15  9 41 47 42 27 18  4 44 26  2 30 42 10  4 23 46 25 34  1</span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>  [51] 37 24 15 19  4 16  5 16  1 43 38 40 25  4 11 29  1 17 29  3 47  8 38  6 37</span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>  [76]  5 20 36 35 43 30 47 39 41 42 43 32 12  4 10 33 11  8 12 31 10 32 28 45 33</span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>   [1] 33 15 22 12 31 27 11 45 38 19  3 29  4 42 41 41 13 36 23 33 38 46 31 45 21</span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>  [26] 24  9 18 10  6 11 41  1 12 38 26 11 36  1 41 32 14  7 37 22 26 16 44 14  7</span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>  [51] 44  4 45  4  2 39 20 43  9 42 29 11  6 36 25 30 23  8 14  4 28 11 14 20 40</span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>  [76] 23  6 11 16 29 27  9  8 15 45 31 35 44 35 46  5 39 44 24 17 12 31 32 36 34</span> | ||||
| <span class="r-in"><span><span class="fu">is_new_episode</span><span class="op">(</span><span class="va">df</span><span class="op">$</span><span class="va">date</span>, episode_days <span class="op">=</span> <span class="fl">60</span><span class="op">)</span> <span class="co"># TRUE/FALSE</span></span></span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>   [1]  TRUE  TRUE  TRUE  TRUE  TRUE FALSE FALSE  TRUE FALSE FALSE  TRUE  TRUE</span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>  [13]  TRUE FALSE  TRUE  TRUE  TRUE FALSE  TRUE  TRUE  TRUE FALSE  TRUE  TRUE</span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>  [25]  TRUE FALSE  TRUE FALSE FALSE  TRUE  TRUE  TRUE  TRUE FALSE  TRUE FALSE</span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>  [37] FALSE  TRUE  TRUE  TRUE  TRUE FALSE FALSE  TRUE FALSE  TRUE FALSE  TRUE</span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>  [49]  TRUE FALSE FALSE  TRUE FALSE  TRUE FALSE  TRUE FALSE FALSE FALSE  TRUE</span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>  [61] FALSE FALSE FALSE FALSE FALSE  TRUE FALSE  TRUE FALSE  TRUE FALSE FALSE</span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>  [73] FALSE FALSE FALSE FALSE  TRUE  TRUE  TRUE FALSE FALSE FALSE  TRUE FALSE</span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>   [1]  TRUE  TRUE  TRUE  TRUE  TRUE  TRUE  TRUE  TRUE  TRUE  TRUE  TRUE  TRUE</span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>  [13]  TRUE  TRUE  TRUE FALSE  TRUE  TRUE  TRUE FALSE FALSE  TRUE FALSE FALSE</span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>  [25]  TRUE  TRUE  TRUE  TRUE  TRUE  TRUE FALSE FALSE  TRUE FALSE FALSE  TRUE</span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>  [37] FALSE FALSE FALSE FALSE  TRUE  TRUE  TRUE  TRUE FALSE FALSE  TRUE  TRUE</span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>  [49] FALSE FALSE FALSE FALSE FALSE FALSE  TRUE  TRUE  TRUE  TRUE FALSE FALSE</span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>  [61] FALSE FALSE FALSE FALSE  TRUE  TRUE FALSE  TRUE FALSE FALSE  TRUE FALSE</span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>  [73] FALSE FALSE  TRUE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE FALSE</span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>  [85] FALSE FALSE  TRUE FALSE FALSE FALSE  TRUE FALSE FALSE FALSE  TRUE FALSE</span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>  [97] FALSE  TRUE  TRUE FALSE</span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>  [97] FALSE FALSE FALSE  TRUE</span> | ||||
| <span class="r-in"><span></span></span> | ||||
| <span class="r-in"><span><span class="co"># filter on results from the third 60-day episode only, using base R</span></span></span> | ||||
| <span class="r-in"><span><span class="va">df</span><span class="op">[</span><span class="fu"><a href="https://rdrr.io/r/base/which.html" class="external-link">which</a></span><span class="op">(</span><span class="fu">get_episode</span><span class="op">(</span><span class="va">df</span><span class="op">$</span><span class="va">date</span>, <span class="fl">60</span><span class="op">)</span> <span class="op">==</span> <span class="fl">3</span><span class="op">)</span>, <span class="op">]</span></span></span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 1 × 46</span></span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>   date       patient   age gender ward     mo           PEN   OXA   FLC   AMX  </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>   <span style="color: #949494; font-style: italic;"><date></span>     <span style="color: #949494; font-style: italic;"><chr></span>   <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><chr></span>  <span style="color: #949494; font-style: italic;"><chr></span>    <span style="color: #949494; font-style: italic;"><mo></span>         <span style="color: #949494; font-style: italic;"><sir></span> <span style="color: #949494; font-style: italic;"><sir></span> <span style="color: #949494; font-style: italic;"><sir></span> <span style="color: #949494; font-style: italic;"><sir></span></span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">1</span> 2003-01-31 151041     85 F      Clinical <span style="color: #949494;">B_</span>ESCHR<span style="color: #949494;">_</span>COLI <span style="color: #080808; background-color: #FFAFAF;">  R  </span> <span style="color: #B2B2B2;">  NA</span>  <span style="color: #B2B2B2;">  NA</span>  <span style="color: #B2B2B2;">  NA</span> </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>   date       patient   age gender ward      mo           PEN   OXA   FLC   AMX  </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>   <span style="color: #949494; font-style: italic;"><date></span>     <span style="color: #949494; font-style: italic;"><chr></span>   <span style="color: #949494; font-style: italic;"><dbl></span> <span style="color: #949494; font-style: italic;"><chr></span>  <span style="color: #949494; font-style: italic;"><chr></span>     <span style="color: #949494; font-style: italic;"><mo></span>         <span style="color: #949494; font-style: italic;"><sir></span> <span style="color: #949494; font-style: italic;"><sir></span> <span style="color: #949494; font-style: italic;"><sir></span> <span style="color: #949494; font-style: italic;"><sir></span></span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">1</span> 2002-07-16 241328     78 M      Outpatie… <span style="color: #949494;">B_</span>STPHY<span style="color: #949494;">_</span>CONS <span style="color: #080808; background-color: #FFAFAF;">  R  </span> <span style="color: #B2B2B2;">  NA</span>  <span style="color: #080808; background-color: #5FD7AF;">  S  </span> <span style="color: #080808; background-color: #FFAFAF;">  R  </span></span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 36 more variables: AMC <sir>, AMP <sir>, TZP <sir>, CZO <sir>, FEP <sir>,</span></span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;">#   CXM <sir>, FOX <sir>, CTX <sir>, CAZ <sir>, CRO <sir>, GEN <sir>,</span></span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;">#   TOB <sir>, AMK <sir>, KAN <sir>, TMP <sir>, SXT <sir>, NIT <sir>,</span></span> | ||||
| @@ -209,19 +209,19 @@ | ||||
| <span class="r-in"><span>    <span class="fu"><a href="https://dplyr.tidyverse.org/reference/arrange.html" class="external-link">arrange</a></span><span class="op">(</span><span class="va">patient</span>, <span class="va">condition</span>, <span class="va">date</span><span class="op">)</span></span></span> | ||||
| <span class="r-in"><span><span class="op">}</span></span></span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 100 × 4</span></span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># Groups:   patient, condition [99]</span></span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># Groups:   patient, condition [95]</span></span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>    patient date       condition new_episode</span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>    <span style="color: #949494; font-style: italic;"><chr></span>   <span style="color: #949494; font-style: italic;"><date></span>     <span style="color: #949494; font-style: italic;"><chr></span>     <span style="color: #949494; font-style: italic;"><lgl></span>      </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 1</span> 067927  2002-01-29 A         TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 2</span> 069276  2015-06-18 A         TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 3</span> 078381  2014-08-17 A         TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 4</span> 09B453  2010-03-21 C         TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 5</span> 0DBF93  2015-10-12 A         TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 6</span> 118928  2004-02-01 B         TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 7</span> 119392  2010-11-01 A         TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 8</span> 122506  2007-08-10 B         TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 9</span> 146120  2011-09-23 B         TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">10</span> 151041  2003-01-31 B         TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 1</span> 067927  2002-02-14 B         TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 2</span> 067927  2002-02-14 B         FALSE      </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 3</span> 0E2483  2007-06-21 B         TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 4</span> 151041  2006-02-10 C         TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 5</span> 155435  2014-06-18 A         TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 6</span> 167474  2008-02-15 A         TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 7</span> 174209  2011-10-03 B         TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 8</span> 175532  2012-10-11 A         TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 9</span> 187841  2012-09-30 C         TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">10</span> 197007  2012-07-17 B         TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 90 more rows</span></span> | ||||
| <span class="r-in"><span></span></span> | ||||
| <span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">require</a></span><span class="op">(</span><span class="st"><a href="https://dplyr.tidyverse.org" class="external-link">"dplyr"</a></span><span class="op">)</span><span class="op">)</span> <span class="op">{</span></span></span> | ||||
| @@ -235,19 +235,19 @@ | ||||
| <span class="r-in"><span>    <span class="fu"><a href="https://dplyr.tidyverse.org/reference/arrange.html" class="external-link">arrange</a></span><span class="op">(</span><span class="va">patient</span>, <span class="va">ward</span>, <span class="va">date</span><span class="op">)</span></span></span> | ||||
| <span class="r-in"><span><span class="op">}</span></span></span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 100 × 5</span></span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># Groups:   ward, patient [94]</span></span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>    ward     date       patient new_index new_logical</span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>    <span style="color: #949494; font-style: italic;"><chr></span>    <span style="color: #949494; font-style: italic;"><date></span>     <span style="color: #949494; font-style: italic;"><chr></span>       <span style="color: #949494; font-style: italic;"><int></span> <span style="color: #949494; font-style: italic;"><lgl></span>      </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 1</span> ICU      2002-01-29 067927          1 TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 2</span> Clinical 2015-06-18 069276          1 TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 3</span> ICU      2014-08-17 078381          1 TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 4</span> Clinical 2010-03-21 09B453          1 TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 5</span> Clinical 2015-10-12 0DBF93          1 TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 6</span> Clinical 2004-02-01 118928          1 TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 7</span> Clinical 2010-11-01 119392          1 TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 8</span> Clinical 2007-08-10 122506          1 TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 9</span> Clinical 2011-09-23 146120          1 TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">10</span> Clinical 2003-01-31 151041          1 TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># Groups:   ward, patient [93]</span></span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>    ward       date       patient new_index new_logical</span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>    <span style="color: #949494; font-style: italic;"><chr></span>      <span style="color: #949494; font-style: italic;"><date></span>     <span style="color: #949494; font-style: italic;"><chr></span>       <span style="color: #949494; font-style: italic;"><int></span> <span style="color: #949494; font-style: italic;"><lgl></span>      </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 1</span> ICU        2002-02-14 067927          1 TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 2</span> ICU        2002-02-14 067927          1 FALSE      </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 3</span> ICU        2007-06-21 0E2483          1 TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 4</span> Clinical   2006-02-10 151041          1 TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 5</span> Clinical   2014-06-18 155435          1 TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 6</span> Clinical   2008-02-15 167474          1 TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 7</span> Outpatient 2011-10-03 174209          1 TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 8</span> Clinical   2012-10-11 175532          1 TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 9</span> Clinical   2012-09-30 187841          1 TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">10</span> Clinical   2012-07-17 197007          1 TRUE       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 90 more rows</span></span> | ||||
| <span class="r-in"><span></span></span> | ||||
| <span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">require</a></span><span class="op">(</span><span class="st"><a href="https://dplyr.tidyverse.org" class="external-link">"dplyr"</a></span><span class="op">)</span><span class="op">)</span> <span class="op">{</span></span></span> | ||||
| @@ -263,9 +263,9 @@ | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 3 × 5</span></span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>   ward       n_patients n_episodes_365 n_episodes_60 n_episodes_30</span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>   <span style="color: #949494; font-style: italic;"><chr></span>           <span style="color: #949494; font-style: italic;"><int></span>          <span style="color: #949494; font-style: italic;"><int></span>         <span style="color: #949494; font-style: italic;"><int></span>         <span style="color: #949494; font-style: italic;"><int></span></span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">1</span> Clinical           56             13            36            47</span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">2</span> ICU                31             12            25            28</span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">3</span> Outpatient          7              5             7             7</span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">1</span> Clinical           55             13            35            44</span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">2</span> ICU                32              9            19            25</span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">3</span> Outpatient          6              6             6             6</span> | ||||
| <span class="r-in"><span></span></span> | ||||
| <span class="r-in"><span><span class="co"># grouping on patients and microorganisms leads to the same</span></span></span> | ||||
| <span class="r-in"><span><span class="co"># results as first_isolate() when using 'episode-based':</span></span></span> | ||||
| @@ -294,19 +294,19 @@ | ||||
| <span class="r-in"><span>    <span class="fu"><a href="https://dplyr.tidyverse.org/reference/select.html" class="external-link">select</a></span><span class="op">(</span><span class="fu"><a href="https://dplyr.tidyverse.org/reference/group_data.html" class="external-link">group_vars</a></span><span class="op">(</span><span class="va">.</span><span class="op">)</span>, <span class="va">flag_episode</span><span class="op">)</span></span></span> | ||||
| <span class="r-in"><span><span class="op">}</span></span></span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># A tibble: 100 × 4</span></span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># Groups:   patient, mo, ward [98]</span></span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># Groups:   patient, mo, ward [95]</span></span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>    patient mo           ward       flag_episode</span> | ||||
| <span class="r-out co"><span class="r-pr">#></span>    <span style="color: #949494; font-style: italic;"><chr></span>   <span style="color: #949494; font-style: italic;"><mo></span>         <span style="color: #949494; font-style: italic;"><chr></span>      <span style="color: #949494; font-style: italic;"><lgl></span>       </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 1</span> 969275  <span style="color: #949494;">B_</span>STPHY<span style="color: #949494;">_</span>EPDR Outpatient TRUE        </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 2</span> A87231  <span style="color: #949494;">B_</span>STPHY<span style="color: #949494;">_</span>CONS Clinical   TRUE        </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 3</span> A84726  <span style="color: #949494;">B_</span>STPHY<span style="color: #949494;">_</span>HMNS Clinical   TRUE        </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 4</span> F5F794  <span style="color: #949494;">B_</span>STPHY<span style="color: #949494;">_</span>AURS Clinical   TRUE        </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 5</span> 146120  <span style="color: #949494;">B_</span>STPHY<span style="color: #949494;">_</span>AURS Clinical   TRUE        </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 6</span> 501607  <span style="color: #949494;">B_</span>STRPT<span style="color: #949494;">_</span>AGLC ICU        TRUE        </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 7</span> 402950  <span style="color: #949494;">B_</span>ENTRC<span style="color: #949494;">_</span>FCLS ICU        TRUE        </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 8</span> 560323  <span style="color: #949494;">B_</span>ESCHR<span style="color: #949494;">_</span>COLI Clinical   TRUE        </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 9</span> 4FC193  <span style="color: #949494;">B_</span>ESCHR<span style="color: #949494;">_</span>COLI Clinical   TRUE        </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">10</span> D80438  <span style="color: #949494;">B_</span>CRYNB<span style="color: #949494;">_</span>STRT Clinical   TRUE        </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 1</span> 88B975  <span style="color: #949494;">B_</span>STRPT      Clinical   TRUE        </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 2</span> 904485  <span style="color: #949494;">B_</span>ESCHR<span style="color: #949494;">_</span>COLI Outpatient TRUE        </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 3</span> 167474  <span style="color: #949494;">B_</span>STPHY<span style="color: #949494;">_</span>CONS Clinical   TRUE        </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 4</span> 777154  <span style="color: #949494;">B_</span>CTRBC      Clinical   TRUE        </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 5</span> E58140  <span style="color: #949494;">B_</span>ESCHR<span style="color: #949494;">_</span>COLI Clinical   TRUE        </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 6</span> E58549  <span style="color: #949494;">B_</span>ESCHR<span style="color: #949494;">_</span>COLI Clinical   TRUE        </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 7</span> D65308  <span style="color: #949494;">B_</span>STPHY<span style="color: #949494;">_</span>EPDR ICU        TRUE        </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 8</span> 871020  <span style="color: #949494;">B_</span>STPHY<span style="color: #949494;">_</span>EPDR Clinical   TRUE        </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;"> 9</span> B13995  <span style="color: #949494;">B_</span>STPHY<span style="color: #949494;">_</span>AURS Clinical   TRUE        </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #BCBCBC;">10</span> CB6026  <span style="color: #949494;">B_</span>STPHY<span style="color: #949494;">_</span>CONS Clinical   TRUE        </span> | ||||
| <span class="r-out co"><span class="r-pr">#></span> <span style="color: #949494;"># ℹ 90 more rows</span></span> | ||||
| <span class="r-in"><span><span class="co"># }</span></span></span> | ||||
| </code></pre></div> | ||||
|   | ||||
		Reference in New Issue
	
	Block a user