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@ -7,7 +7,7 @@
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9216</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">2.1.1.9217</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -101,42 +101,43 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.005 0.125 1 0.002 1 0.125 32 0.01 0.5 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 2 0.001 0.005 0.0625 0.001 0.001 2 256 128 0.005 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.002 1 0.002 32 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.025 2 0.25 8 4 >=256 64 0.125 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 16 2 0.025 8 32 <=0.001 4 2 128 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.125 4 0.01 >=256 0.25 0.25 1 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 40 42 43 46 45 40 48 50 23 9 25 36 16 6 43 36 41 50 40 47 25 34 37 9</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 48 8 6 21 6 34 30 30 42 26 10 41 26 22 46 19 16 38 34 12 50 42 45 42 44</span>
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<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I S R R I I I I R R I I I S R S R S S S R R I S R</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I R R S R I I R R R R R R I R S S S I I S S R R R</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 16 2 0.025 8 32 0.001 4 2 128 0.125 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 0.01 >=256 0.25 0.25 1 0.002 0.25 2 0.005 0.001 64 0.001</span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 0.025</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 16 0.025 0.001 4 4 0.125 0.002 2 0.25 0.25 64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 0.5 0.005 256 8 0.125 16 0.005 0.001 64 0.5 8 64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 0.001</span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] <=1 8 4 <=1 >=16 >=16 >=16 2 >=16 2 >=16 4 >=16 >=16 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 2 >=16 <=1 4 8 8 >=16 4 8 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 8 2 >=16 <=0.25 <=0.25 >=16 1 1 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 8 <=0.25 2 0.5 2 <=0.25 1 4 1 <=0.25</span>
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<span class="r-out co"><span class="r-pr">#></span> [21] >=16 4 2 1 <=0.25</span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 0.125 0.125 0.25 1 1 0.0625 0.5 1 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 4 0.125 0.25 0.25 0.0625 4 0.25 0.125 4 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 4 0.5 0.0625 4 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 8 0.0625 0.0625 0.0625 4 <=0.025 0.125 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 8 0.25 0.25 0.125 <=0.025 0.25 <=0.025 0.0625 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] <=0.025 8 4 4 <=0.025 8 8 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 47 49 10 40 23 16 20 34 45 8 42 10 20 11 30 36 40 35 14 24 8 38 10 10 15</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 24 46 50 48 11 23 30 47 33 21 43 17 16 48 16 39 38 16 49 33 47 14 18 42</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 14 12 14 11 13 15 13 11 17 15 14 13 11 15 17 14 16 17 17 17 11 12 12 12 14</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 12 13 15 14 12 16 15 16 13 13 12 13 12 11 16 17 11 17 11 14 12 14 11 12 12</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 27 15 17 23 23 18 18 17 15 18 27 15 25 16 21 15 24 23 22 22 15 23 25 23 24</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 20 18 24 24 17 18 26 24 26 24 20 20 26 24 19 15 17 17 24 20 17 22 22 19 15</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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