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@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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@ -385,18 +385,18 @@ names or codes, this would have worked exactly the same way:</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co"># rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co"># 1 R I S R R I</span></span>
<span><span class="co"># 2 I R S I R R</span></span>
<span><span class="co"># 3 I I R S I R</span></span>
<span><span class="co"># 4 R I R I R I</span></span>
<span><span class="co"># 5 R S I R R S</span></span>
<span><span class="co"># 6 S R R R R R</span></span>
<span><span class="co"># 1 S R R S R R</span></span>
<span><span class="co"># 2 R R I R S R</span></span>
<span><span class="co"># 3 S S R S S S</span></span>
<span><span class="co"># 4 R S S I S S</span></span>
<span><span class="co"># 5 I S S R S R</span></span>
<span><span class="co"># 6 I I S R R R</span></span>
<span><span class="co"># kanamycin</span></span>
<span><span class="co"># 1 R</span></span>
<span><span class="co"># 2 R</span></span>
<span><span class="co"># 3 I</span></span>
<span><span class="co"># 4 S</span></span>
<span><span class="co"># 5 S</span></span>
<span><span class="co"># 2 S</span></span>
<span><span class="co"># 3 S</span></span>
<span><span class="co"># 4 R</span></span>
<span><span class="co"># 5 I</span></span>
<span><span class="co"># 6 R</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can
use:</p>
@ -438,40 +438,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3194</td>
<td align="right">63.88%</td>
<td align="right">3194</td>
<td align="right">63.88%</td>
<td align="right">3202</td>
<td align="right">64.04%</td>
<td align="right">3202</td>
<td align="right">64.04%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">998</td>
<td align="right">19.96%</td>
<td align="right">4192</td>
<td align="right">83.84%</td>
<td align="right">1007</td>
<td align="right">20.14%</td>
<td align="right">4209</td>
<td align="right">84.18%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">468</td>
<td align="right">9.36%</td>
<td align="right">4660</td>
<td align="right">93.20%</td>
<td align="right">453</td>
<td align="right">9.06%</td>
<td align="right">4662</td>
<td align="right">93.24%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">232</td>
<td align="right">4.64%</td>
<td align="right">4892</td>
<td align="right">97.84%</td>
<td align="right">227</td>
<td align="right">4.54%</td>
<td align="right">4889</td>
<td align="right">97.78%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">108</td>
<td align="right">2.16%</td>
<td align="right">111</td>
<td align="right">2.22%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>