P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-09 22:22:03 +02:00
Code Releases Activity

(v2.1.1.9232) is.mic() iteration, documentation cleanup

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2025-03-31 10:51:31 +02:00
parent 5f5b77bfaf
commit 63099cd81e
93 changed files with 1001 additions and 990 deletions
Download Patch File Download Diff File Expand all files Collapse all files

10
R/ab.R
View File

@ -30,11 +30,11 @@
#' Transform Input to an Antibiotic ID
#'
#' Use this function to determine the antimicrobial drug code of one or more antimicrobials. The data set [antimicrobials] will be searched for abbreviations, official names and synonyms (brand names).
#' @param x a [character] vector to determine to antibiotic ID
#' @param flag_multiple_results a [logical] to indicate whether a note should be printed to the console that probably more than one antibiotic drug code or name can be retrieved from a single input value.
#' @param language language to coerce input values from any of the `r length(LANGUAGES_SUPPORTED)` supported languages - default to the system language if supported (see [get_AMR_locale()])
#' @param info a [logical] to indicate whether a progress bar should be printed - the default is `TRUE` only in interactive mode
#' @param ... arguments passed on to internal functions
#' @param x A [character] vector to determine to antibiotic ID
#' @param flag_multiple_results A [logical] to indicate whether a note should be printed to the console that probably more than one antibiotic drug code or name can be retrieved from a single input value.
#' @param language Language to coerce input values from any of the `r length(LANGUAGES_SUPPORTED)` supported languages - default to the system language if supported (see [get_AMR_locale()])
#' @param info A [logical] to indicate whether a progress bar should be printed - the default is `TRUE` only in interactive mode
#' @param ... Arguments passed on to internal functions
#' @rdname as.ab
#' @inheritSection WHOCC WHOCC
#' @details All entries in the [antimicrobials] data set have three different identifiers: a human readable EARS-Net code (column `ab`, used by ECDC and WHONET), an ATC code (column `atc`, used by WHO), and a CID code (column `cid`, Compound ID, used by PubChem). The data set contains more than 5,000 official brand names from many different countries, as found in PubChem. Not that some drugs contain multiple ATC codes.