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(v1.4.0.9056) subsetting ab class selectors for base R

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dr. M.S. (Matthijs) Berends
2021-01-03 23:40:05 +01:00
parent ecac443f86
commit 63a4dda467
20 changed files with 334 additions and 199 deletions
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@ -35,6 +35,8 @@ example_isolates %>%
select(mo, aminoglycosides(), carbapenems())
#> NOTE: Using column 'mo' as input for mo_is_gram_negative()
#> NOTE: Using column 'mo' as input for mo_is_intrinsic_resistant()
#> NOTE: Determining intrinsic resistance based on 'EUCAST Expert Rules' and
#> 'EUCAST Intrinsic Resistance and Unusual Phenotypes' v3.2 from 2020.
#> Selecting aminoglycosides: 'AMK' (amikacin), 'GEN' (gentamicin),
#> 'KAN' (kanamycin), 'TOB' (tobramycin)
#> Selecting carbapenems: 'IPM' (imipenem), 'MEM' (meropenem)
@ -52,6 +54,15 @@ With only having defined a row filter on Gram-negative bacteria with intrinsic r
|*Stenotrophomonas maltophilia* | R | R | R | R | R | R |
|*Pseudomonas aeruginosa* | S | S | R | S | | S |
A base R equivalent would be:
```r
example_isolates$mo <- mo_fullname(example_isolates$mo)
example_isolates[which(mo_is_gram_negative() &
mo_is_intrinsic_resistant(ab = "cefotax")),
c("mo", aminoglycosides(), carbapenems())]
```
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