P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-12 03:41:59 +02:00
Code Releases Activity

new rsi_interpretation_history

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2022-09-01 15:20:57 +02:00
parent a3b97a10a5
commit 63fe160322
12 changed files with 191 additions and 171 deletions
Download Patch File Download Diff File Expand all files Collapse all files

20
man/mean_amr_distance.Rd
View File

@ -59,20 +59,24 @@ x <- random_mic(10)
x
mean_amr_distance(x)
y <- data.frame(id = LETTERS[1:10],
amox = random_mic(10, ab = "amox", mo = "Escherichia coli"),
cipr = random_mic(10, ab = "cipr", mo = "Escherichia coli"),
gent = random_mic(10, ab = "gent", mo = "Escherichia coli"),
tobr = random_mic(10, ab = "tobr", mo = "Escherichia coli"))
y <- data.frame(
id = LETTERS[1:10],
amox = random_mic(10, ab = "amox", mo = "Escherichia coli"),
cipr = random_mic(10, ab = "cipr", mo = "Escherichia coli"),
gent = random_mic(10, ab = "gent", mo = "Escherichia coli"),
tobr = random_mic(10, ab = "tobr", mo = "Escherichia coli")
)
y
mean_amr_distance(y)
y$amr_distance <- mean_amr_distance(y, where(is.mic))
y[order(y$amr_distance), ]
if (require("dplyr")) {
y \%>\%
mutate(amr_distance = mean_amr_distance(., where(is.mic)),
check_id_C = distance_from_row(amr_distance, id == "C")) \%>\%
y \%>\%
mutate(
amr_distance = mean_amr_distance(., where(is.mic)),
check_id_C = distance_from_row(amr_distance, id == "C")
) \%>\%
arrange(check_id_C)
}
if (require("dplyr")) {