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@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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@ -375,18 +375,18 @@ names or codes, this would have worked exactly the same way:</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co"># rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co"># 1 S S I R R S</span></span>
<span><span class="co"># 2 I R I S S R</span></span>
<span><span class="co"># 3 S I R S S S</span></span>
<span><span class="co"># 4 R S R I I R</span></span>
<span><span class="co"># 5 I I R I S I</span></span>
<span><span class="co"># 6 S I I S S S</span></span>
<span><span class="co"># 1 S S I R I S</span></span>
<span><span class="co"># 2 I S I R R R</span></span>
<span><span class="co"># 3 R I I R S I</span></span>
<span><span class="co"># 4 S S R S S S</span></span>
<span><span class="co"># 5 I S S I R I</span></span>
<span><span class="co"># 6 I R S R S S</span></span>
<span><span class="co"># kanamycin</span></span>
<span><span class="co"># 1 I</span></span>
<span><span class="co"># 2 I</span></span>
<span><span class="co"># 3 R</span></span>
<span><span class="co"># 4 I</span></span>
<span><span class="co"># 5 S</span></span>
<span><span class="co"># 3 S</span></span>
<span><span class="co"># 4 R</span></span>
<span><span class="co"># 5 I</span></span>
<span><span class="co"># 6 I</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can
use:</p>
@ -428,40 +428,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3201</td>
<td align="right">64.02%</td>
<td align="right">3201</td>
<td align="right">64.02%</td>
<td align="right">3173</td>
<td align="right">63.46%</td>
<td align="right">3173</td>
<td align="right">63.46%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">985</td>
<td align="right">19.70%</td>
<td align="right">4186</td>
<td align="right">83.72%</td>
<td align="right">1011</td>
<td align="right">20.22%</td>
<td align="right">4184</td>
<td align="right">83.68%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">470</td>
<td align="right">9.40%</td>
<td align="right">4656</td>
<td align="right">93.12%</td>
<td align="right">481</td>
<td align="right">9.62%</td>
<td align="right">4665</td>
<td align="right">93.30%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">240</td>
<td align="right">4.80%</td>
<td align="right">4896</td>
<td align="right">97.92%</td>
<td align="right">236</td>
<td align="right">4.72%</td>
<td align="right">4901</td>
<td align="right">98.02%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">104</td>
<td align="right">2.08%</td>
<td align="right">99</td>
<td align="right">1.98%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>