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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9061</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9062</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -183,43 +183,42 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.001 0.0625 0.002 0.005 0.01 0.25 128 0.125 0.002 0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.025 0.25 >=256 64 0.002 0.0625 1 0.25 0.01 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 4 1 0.5 0.002 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.01 0.005 0.01 0.25 0.25 16 0.01 32 0.125 32 64 0.001</span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 0.002 16 1 0.002 32 32 0.5 0.001 128 128 0.001 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 0.001</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 43 6 16 49 45 14 26 43 40 22 38 32 15 38 8 47 17 22 50 50 37 32 36 18 14</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 21 32 24 30 24 6 44 26 46 8 27 18 45 44 42 39 24 34 8 37 34 15 17 48 17</span>
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<span class="r-in"><span><span class="fu">random_rsi</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'rsi'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S R I S R S I S R R I I R S I S I R R I R S R S I</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I R S S S I S I R R R I R I R I R R R S I R I S I</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.0625 0.01 0.01 1 64 1 64 64 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.002 <=0.001 4 2 1 <=0.001 0.25 0.005 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.025 2 16 0.5 0.5 64 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 0.005 0.025 32 8 0.025 8 16 64 0.125 4 0.005</span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 0.5 2 0.025 4 0.001 0.5 2 1 0.001 32 4 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 1 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 8 <=0.5 >=16 <=0.5 <=0.5 8 <=0.5 <=0.5 8 1 >=16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] >=16 4 4 1 1 8 >=16 8 4 4 >=16 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 32 2 16 32 4 32 4 16 2 16 2 2 0.25 32 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 4 2 16 2 16 2 0.5 0.5 2 32 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 0.25 1 2 2 1 1 1 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 2 2 8 1 0.25 2 0.5 0.25 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 2 0.25 0.25 0.0625 1 <=0.025 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 0.125 4 0.125 1 0.0625 4 1 1 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 4 2 1 4 0.5 0.0625 0.125 1 0.0625 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 1 2 2 0.0625 2 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 13 40 38 28 44 48 11 44 45 45 24 49 41 50 8 42 40 47 41 50 45 40 31 17 21</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 9 44 40 35 36 40 30 17 25 18 9 14 24 14 30 41 38 16 27 50 12 11 44 46 20</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 15 17 15 13 12 13 12 14 12 17 17 17 13 12 15 12 17 11 11 15 14 14 14 17 14</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 15 14 17 12 17 11 12 16 14 17 17 11 16 13 16 16 14 16 12 13 12 15 12 17 17</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 23 16 15 25 26 17 26 18 18 19 20 16 17 20 23 16 19 15 26 15 24 17 27 22 20</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 24 22 25 16 17 16 20 16 19 15 24 16 24 23 16 16 25 23 15 26 20 22 24 25 20</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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