From 643c5ed807a5f23d456bb17718059c61a7b83af8 Mon Sep 17 00:00:00 2001 From: "Matthijs S. Berends" Date: Sun, 4 Aug 2019 11:33:56 +0200 Subject: [PATCH] (v0.7.1.9022) CI fix for codecov --- .gitlab-ci.yml | 2 +- DESCRIPTION | 2 +- NEWS.md | 2 +- docs/LICENSE-text.html | 2 +- docs/articles/index.html | 2 +- docs/authors.html | 2 +- docs/index.html | 2 +- docs/news/index.html | 8 ++++---- docs/reference/index.html | 2 +- 9 files changed, 12 insertions(+), 12 deletions(-) diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 6ab64af1..ac0915d6 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -118,7 +118,7 @@ coverage: # install missing and outdated packages - Rscript -e 'source(".gitlab-ci.R"); gl_update_pkg_all(repos = "https://cran.rstudio.com", quiet = TRUE, install_pkgdown = FALSE)' # codecov token is set in https://gitlab.com/msberends/AMR/settings/ci_cd - - Rscript -e "cc <- covr::package_coverage()); covr::codecov(coverage = cc, token = '$codecov'); cat('Code coverage:', covr::percent_coverage(cc))" + - Rscript -e "cc <- covr::package_coverage(line_exclusions = list('R/atc_online.R', 'R/mo_source.R')); covr::codecov(coverage = cc, token = '$codecov'); cat('Code coverage:', covr::percent_coverage(cc))" coverage: '/Code coverage: \d+\.\d+/' pages: diff --git a/DESCRIPTION b/DESCRIPTION index 2c5bc58f..f74971b2 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,5 +1,5 @@ Package: AMR -Version: 0.7.1.9021 +Version: 0.7.1.9022 Date: 2019-08-04 Title: Antimicrobial Resistance Analysis Authors@R: c( diff --git a/NEWS.md b/NEWS.md index 0cad9316..c012573a 100755 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -# AMR 0.7.1.9021 +# AMR 0.7.1.9022 ### Breaking * Function `freq()` has moved to a new package, [`clean`](https://github.com/msberends/clean) ([CRAN link](https://cran.r-project.org/package=clean)). Creating frequency tables is actually not the scope of this package (never was) and this function has matured a lot over the last two years. We decided to create a new package for data cleaning and checking and it perfectly fits the `freq()` function. The [`clean`](https://github.com/msberends/clean) package is available on CRAN and will be installed automatically when updating the `AMR` package, that now imports it. In a later stage, the `skewness()` and `kurtosis()` functions will be moved to the `clean` package too. diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html index 11801aa4..0be3b28d 100644 --- a/docs/LICENSE-text.html +++ b/docs/LICENSE-text.html @@ -78,7 +78,7 @@ AMR (for R) - 0.7.1.9021 + 0.7.1.9022 diff --git a/docs/articles/index.html b/docs/articles/index.html index 28f44446..4d62047d 100644 --- a/docs/articles/index.html +++ b/docs/articles/index.html @@ -78,7 +78,7 @@ AMR (for R) - 0.7.1.9021 + 0.7.1.9022 diff --git a/docs/authors.html b/docs/authors.html index 34d8dba3..00fdb2df 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -78,7 +78,7 @@ AMR (for R) - 0.7.1.9021 + 0.7.1.9022 diff --git a/docs/index.html b/docs/index.html index d1747e19..82f9f921 100644 --- a/docs/index.html +++ b/docs/index.html @@ -42,7 +42,7 @@ AMR (for R) - 0.7.1.9021 + 0.7.1.9022 diff --git a/docs/news/index.html b/docs/news/index.html index fad857df..57b397f3 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -78,7 +78,7 @@ AMR (for R) - 0.7.1.9021 + 0.7.1.9022 @@ -225,9 +225,9 @@ -
+

-AMR 0.7.1.9021 Unreleased +AMR 0.7.1.9022 Unreleased

@@ -1198,7 +1198,7 @@ Using as.mo(..., allow_uncertain = 3)

Contents

    -
  • 0.7.1.9021
    • +
  • 0.7.1.9022
  • 0.7.1
  • 0.7.0
  • 0.6.1
    • diff --git a/docs/reference/index.html b/docs/reference/index.html index 5315cd78..40870bf8 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -78,7 +78,7 @@ AMR (for R) - 0.7.1.9021 + 0.7.1.9022