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(v0.9.0.9009) antibiotics data set update

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dr. M.S. (Matthijs) Berends
2020-01-08 11:30:33 +01:00
parent ced1a7b7fa
commit 64f5ceef03
49 changed files with 134 additions and 59 deletions
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docs/reference/as.ab.html
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@ -85,7 +85,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">0.9.0.9007</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">0.9.0.9009</span>
</span>
</div>
@ -293,7 +293,7 @@ This package contains <strong>all ~550 antibiotic, antimycotic and antiviral dru
<div class='dont-index'><p><a href='antibiotics.html'>antibiotics</a> for the dataframe that is being used to determine ATCs.</p></div>
<h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
<pre class="examples"><span class='co'># These examples all return "ERY", the ID of Erythromycin:</span>
<pre class="examples"><span class='co'># these examples all return "ERY", the ID of erythromycin:</span>
<span class='fu'>as.ab</span>(<span class='st'>"J01FA01"</span>)
<span class='fu'>as.ab</span>(<span class='st'>"J 01 FA 01"</span>)
<span class='fu'>as.ab</span>(<span class='st'>"Erythromycin"</span>)
@ -305,7 +305,13 @@ This package contains <strong>all ~550 antibiotic, antimycotic and antiviral dru
<span class='fu'>as.ab</span>(<span class='st'>"Erythrocin"</span>) <span class='co'># trade name</span>
<span class='fu'>as.ab</span>(<span class='st'>"Romycin"</span>) <span class='co'># trade name</span>
<span class='co'># Use ab_* functions to get a specific properties (see ?ab_property);</span>
<span class='co'># spelling from different languages and dyslexia are no problem</span>
<span class='fu'><a href='ab_property.html'>ab_atc</a></span>(<span class='st'>"ceftriaxon"</span>)
<span class='fu'><a href='ab_property.html'>ab_atc</a></span>(<span class='st'>"cephtriaxone"</span>)
<span class='fu'><a href='ab_property.html'>ab_atc</a></span>(<span class='st'>"cephthriaxone"</span>)
<span class='fu'><a href='ab_property.html'>ab_atc</a></span>(<span class='st'>"seephthriaaksone"</span>)
<span class='co'># use ab_* functions to get a specific properties (see ?ab_property);</span>
<span class='co'># they use as.ab() internally:</span>
<span class='fu'><a href='ab_property.html'>ab_name</a></span>(<span class='st'>"J01FA01"</span>) <span class='co'># "Erythromycin"</span>
<span class='fu'><a href='ab_property.html'>ab_name</a></span>(<span class='st'>"eryt"</span>) <span class='co'># "Erythromycin"</span></pre>