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Code Releases Activity

(v0.7.1.9033) 5000 new fungi

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dr. M.S. (Matthijs) Berends
2019-08-09 23:22:10 +02:00
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NEWS.md
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# AMR 0.7.1.9032
# AMR 0.7.1.9033
### Breaking
* Function `freq()` has moved to a new package, [`clean`](https://github.com/msberends/clean) ([CRAN link](https://cran.r-project.org/package=clean)). Creating frequency tables is actually not the scope of this package (never was) and this function has matured a lot over the last two years. Therefore, a new package was created for data cleaning and checking and it perfectly fits the `freq()` function. The [`clean`](https://github.com/msberends/clean) package is available on CRAN and will be installed automatically when updating the `AMR` package, that now imports it. In a later stage, the `skewness()` and `kurtosis()` functions will be moved to the `clean` package too.
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* Some misspelled input were not understood
* These new trivial names known to the field are now understood: meningococcus, gonococcus, pneumococcus
* Added support for unknown yeasts and fungi
* Added the newest taxonomic data from the IJSEM journal (now up to date until August 2019)
* Updated the `microorganisms` data set to contain the latest taxonomic data from the IJSEM journal (now up to date until August 2019)
* Added almost 5,000 new fungi to the `microorganisms` data set
* Fix for using `mo_*` functions where the coercion uncertainties and failures would not be available through `mo_uncertainties()` and `mo_failures()` anymore
* Deprecated the `country` parameter of `mdro()` in favour of the already existing `guideline` parameter to support multiple guidelines within one country
* The `name` of `RIF` is now Rifampicin instead of Rifampin