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Code Releases Activity

(v1.6.0.9056) support codecov again

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This commit is contained in:
dr. M.S. (Matthijs) Berends
2021-05-21 20:30:48 +02:00
parent b210f1327c
commit 65a8b58aa6
14 changed files with 23 additions and 20 deletions
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5
.github/workflows/codecovr.yaml vendored
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@ -63,13 +63,16 @@ jobs:
- name: Install dependencies
run: |
install.packages(c("remotes"))
install.packages(c("remotes", "tinytest"))
remotes::install_deps(dependencies = TRUE)
remotes::install_cran("covr")
remotes::install_local("data-raw/AMR_latest.tar.gz")
shell: Rscript {0}
- name: Test coverage
run: |
library(AMR)
library(tinytest)
source_files <- list.files("R", pattern = ".R$", full.names = TRUE)
test_files <- list.files("inst/tinytest", full.names = TRUE)
cov <- covr::file_coverage(source_files = source_files, test_files = test_files, line_exclusions = list("R/atc_online.R", "R/mo_source.R", "R/translate.R", "R/resistance_predict.R", "R/aa_helper_functions.R", "R/aa_helper_pm_functions.R", "R/zzz.R"))