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(v0.7.1.9004) atc class removal

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dr. M.S. (Matthijs) Berends
2019-06-27 11:57:45 +02:00
parent 6013fbefae
commit 65c6702b21
49 changed files with 393 additions and 706 deletions
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6
man/count.Rd
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@ -25,9 +25,9 @@ count_SI(..., also_single_tested = FALSE)
count_S(..., also_single_tested = FALSE)
count_all(...)
count_all(..., also_single_tested = FALSE)
n_rsi(...)
n_rsi(..., also_single_tested = FALSE)
count_df(data, translate_ab = "name", language = get_locale(),
combine_SI = TRUE, combine_IR = FALSE)
@ -35,7 +35,7 @@ count_df(data, translate_ab = "name", language = get_locale(),
\arguments{
\item{...}{one or more vectors (or columns) with antibiotic interpretations. They will be transformed internally with \code{\link{as.rsi}} if needed.}
\item{also_single_tested}{a logical to indicate whether (in combination therapies) also observations should be included where not all antibiotics were tested, but at least one of the tested antibiotics contains a target interpretation (e.g. S in case of \code{portion_S} and R in case of \code{portion_R}). \strong{This would lead to selection bias in almost all cases.}}
\item{also_single_tested}{a logical to indicate whether for combination therapies also observations should be included where not all antibiotics were tested, but at least one of the tested antibiotics contains a target interpretation (e.g. S in case of \code{portion_S} and R in case of \code{portion_R}). \strong{This could lead to selection bias.}}
\item{data}{a \code{data.frame} containing columns with class \code{rsi} (see \code{\link{as.rsi}})}