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(v2.1.1.9126) implemented WISCA! Also added top_n_microorganisms() and fixed Python wrapper

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dr. M.S. (Matthijs) Berends
2025-01-26 23:01:17 +01:00
parent 92c4fc0f94
commit 66833b4f5a
46 changed files with 1786 additions and 1842 deletions
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8
man/count.Rd
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@@ -32,12 +32,8 @@ count_all(..., only_all_tested = FALSE)
n_sir(..., only_all_tested = FALSE)
count_df(
data,
translate_ab = "name",
language = get_AMR_locale(),
combine_SI = TRUE
)
count_df(data, translate_ab = "name", language = get_AMR_locale(),
combine_SI = TRUE)
}
\arguments{
\item{...}{one or more vectors (or columns) with antibiotic interpretations. They will be transformed internally with \code{\link[=as.sir]{as.sir()}} if needed.}