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(v2.1.1.9126) implemented WISCA! Also added top_n_microorganisms() and fixed Python wrapper

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dr. M.S. (Matthijs) Berends
2025-01-26 23:01:17 +01:00
parent 92c4fc0f94
commit 66833b4f5a
46 changed files with 1786 additions and 1842 deletions
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16
man/eucast_rules.Rd
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@ -19,19 +19,11 @@ Leclercq et al. \strong{EUCAST expert rules in antimicrobial susceptibility test
}
}
\usage{
eucast_rules(
x,
col_mo = NULL,
info = interactive(),
eucast_rules(x, col_mo = NULL, info = interactive(),
rules = getOption("AMR_eucastrules", default = c("breakpoints", "expert")),
verbose = FALSE,
version_breakpoints = 12,
version_expertrules = 3.3,
ampc_cephalosporin_resistance = NA,
only_sir_columns = FALSE,
custom_rules = NULL,
...
)
verbose = FALSE, version_breakpoints = 12, version_expertrules = 3.3,
ampc_cephalosporin_resistance = NA, only_sir_columns = FALSE,
custom_rules = NULL, ...)
eucast_dosage(ab, administration = "iv", version_breakpoints = 12)
}