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(v2.1.1.9126) implemented WISCA! Also added top_n_microorganisms() and fixed Python wrapper

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dr. M.S. (Matthijs) Berends
2025-01-26 23:01:17 +01:00
parent 92c4fc0f94
commit 66833b4f5a
46 changed files with 1786 additions and 1842 deletions
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10
man/export_ncbi_biosample.Rd
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@@ -4,13 +4,9 @@
\alias{export_ncbi_biosample}
\title{Export Data Set as NCBI BioSample Antibiogram}
\usage{
export_ncbi_biosample(
x,
filename = paste0("biosample_", format(Sys.time(), "\%Y-\%m-\%d-\%H\%M\%S"), ".xlsx"),
type = "pathogen MIC",
columns = where(is.mic),
save_as_xlsx = TRUE
)
export_ncbi_biosample(x, filename = paste0("biosample_", format(Sys.time(),
"\%Y-\%m-\%d-\%H\%M\%S"), ".xlsx"), type = "pathogen MIC",
columns = where(is.mic), save_as_xlsx = TRUE)
}
\arguments{
\item{x}{a data set}