P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-13 02:32:07 +02:00
Code Releases Activity

(v2.1.1.9126) implemented WISCA! Also added top_n_microorganisms() and fixed Python wrapper

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2025-01-26 23:01:17 +01:00
parent 92c4fc0f94
commit 66833b4f5a
46 changed files with 1786 additions and 1842 deletions
Download Patch File Download Diff File Expand all files Collapse all files

31
man/ggplot_pca.Rd
View File

@ -17,30 +17,13 @@ As per their GPL-2 licence that demands documentation of code changes, the chang
}
}
\usage{
ggplot_pca(
x,
choices = 1:2,
scale = 1,
pc.biplot = TRUE,
labels = NULL,
labels_textsize = 3,
labels_text_placement = 1.5,
groups = NULL,
ellipse = TRUE,
ellipse_prob = 0.68,
ellipse_size = 0.5,
ellipse_alpha = 0.5,
points_size = 2,
points_alpha = 0.25,
arrows = TRUE,
arrows_colour = "darkblue",
arrows_size = 0.5,
arrows_textsize = 3,
arrows_textangled = TRUE,
arrows_alpha = 0.75,
base_textsize = 10,
...
)
ggplot_pca(x, choices = 1:2, scale = 1, pc.biplot = TRUE,
labels = NULL, labels_textsize = 3, labels_text_placement = 1.5,
groups = NULL, ellipse = TRUE, ellipse_prob = 0.68,
ellipse_size = 0.5, ellipse_alpha = 0.5, points_size = 2,
points_alpha = 0.25, arrows = TRUE, arrows_colour = "darkblue",
arrows_size = 0.5, arrows_textsize = 3, arrows_textangled = TRUE,
arrows_alpha = 0.75, base_textsize = 10, ...)
}
\arguments{
\item{x}{an object returned by \code{\link[=pca]{pca()}}, \code{\link[=prcomp]{prcomp()}} or \code{\link[=princomp]{princomp()}}}