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(v1.7.1.9001) unit tests

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dr. M.S. (Matthijs) Berends
2021-06-05 15:12:01 +02:00
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commit 683a0e748a
21 changed files with 45 additions and 31 deletions
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docs/news/index.html
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@ -81,7 +81,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.7.1.9000</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.7.1.9001</span>
</span>
</div>
@ -236,12 +236,12 @@
<small>Source: <a href='https://github.com/msberends/AMR/blob/master/NEWS.md'><code>NEWS.md</code></a></small>
</div>
<div id="amr-1719000" class="section level1">
<h1 class="page-header" data-toc-text="1.7.1.9000">
<a href="#amr-1719000" class="anchor"></a><small> Unreleased </small><code>AMR</code> 1.7.1.9000</h1>
<div id="last-updated-4-june-2021" class="section level2">
<div id="amr-1719001" class="section level1">
<h1 class="page-header" data-toc-text="1.7.1.9001">
<a href="#amr-1719001" class="anchor"></a><small> Unreleased </small><code>AMR</code> 1.7.1.9001</h1>
<div id="last-updated-5-june-2021" class="section level2">
<h2 class="hasAnchor">
<a href="#last-updated-4-june-2021" class="anchor"></a><small>Last updated: 4 June 2021</small>
<a href="#last-updated-5-june-2021" class="anchor"></a><small>Last updated: 5 June 2021</small>
</h2>
<div id="changed" class="section level3">
<h3 class="hasAnchor">
@ -260,7 +260,6 @@
<h3 class="hasAnchor">
<a href="#breaking-change" class="anchor"></a>Breaking change</h3>
<ul>
<li><p>Support for CLSI 2020 guideline for interpreting MICs and disk diffusion values (using <code><a href="../reference/as.rsi.html">as.rsi()</a></code>)</p></li>
<li>
<p>All antibiotic class selectors (such as <code><a href="../reference/antibiotic_class_selectors.html">carbapenems()</a></code>, <code><a href="../reference/antibiotic_class_selectors.html">aminoglycosides()</a></code>) can now be used for filtering as well, making all their accompanying <code>filter_*()</code> functions redundant (such as <code><a href="../reference/AMR-deprecated.html">filter_carbapenems()</a></code>, <code><a href="../reference/AMR-deprecated.html">filter_aminoglycosides()</a></code>). These functions are now deprecated and will be removed in a next release. Examples of how the selectors can be used for filtering:</p>
<div class="sourceCode" id="cb1"><pre class="downlit sourceCode r">
@ -286,6 +285,7 @@
<h3 class="hasAnchor">
<a href="#new" class="anchor"></a>New</h3>
<ul>
<li>Support for CLSI 2020 guideline for interpreting MICs and disk diffusion values (using <code><a href="../reference/as.rsi.html">as.rsi()</a></code>)</li>
<li>Function <code><a href="../reference/custom_eucast_rules.html">custom_eucast_rules()</a></code> that brings support for custom AMR rules in <code><a href="../reference/eucast_rules.html">eucast_rules()</a></code>
</li>
<li>Function <code><a href="../reference/italicise_taxonomy.html">italicise_taxonomy()</a></code> to make taxonomic names within a string italic, with support for markdown and ANSI</li>