P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-24 03:43:22 +02:00
Code Releases Activity

algorithm update

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2019-02-21 18:55:52 +01:00
parent c6e57ca456
commit 68a9a35ed6
112 changed files with 586 additions and 886 deletions
Download Patch File Download Diff File Expand all files Collapse all files

4
docs/index.html
View File

@ -211,7 +211,7 @@
<li>Getting properties for any antibiotic (like name, ATC code, defined daily dose or trade name)</li>
<li>Plotting antimicrobial resistance</li>
<li>Determining first isolates to be used for AMR analysis</li>
<li>Applying EUCAST rules</li>
<li>Applying EUCAST expert rules (not the translation from MIC to RSI values)</li>
<li>Determining multi-drug resistant organisms (MDRO)</li>
<li>Descriptive statistics: frequency tables, kurtosis and skewness</li>
</ul>
@ -321,7 +321,7 @@
<li>
<p>It <strong>enhances existing data</strong> and <strong>adds new data</strong> from data sets included in this package.</p>
<ul>
<li>Use <code><a href="reference/eucast_rules.html">eucast_rules()</a></code> to apply <a href="http://www.eucast.org/expert_rules_and_intrinsic_resistance/">EUCAST expert rules to isolates</a>.</li>
<li>Use <code><a href="reference/eucast_rules.html">eucast_rules()</a></code> to apply <a href="http://www.eucast.org/expert_rules_and_intrinsic_resistance/">EUCAST expert rules to isolates</a> (not the translation from MIC to RSI values).</li>
<li>Use <code><a href="reference/first_isolate.html">first_isolate()</a></code> to identify the first isolates of every patient <a href="https://clsi.org/standards/products/microbiology/documents/m39/">using guidelines from the CLSI</a> (Clinical and Laboratory Standards Institute).
<ul>
<li>You can also identify first <em>weighted</em> isolates of every patient, an adjusted version of the CLSI guideline. This takes into account key antibiotics of every strain and compares them.</li>