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algorithm update

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dr. M.S. (Matthijs) Berends
2019-02-21 18:55:52 +01:00
parent c6e57ca456
commit 68a9a35ed6
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man/AMR.Rd
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@ -1,5 +1,5 @@
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/zzz.R
% Please edit documentation in R/amr.R
\name{AMR}
\alias{AMR}
\title{The \code{AMR} Package}
@ -13,14 +13,16 @@ We created this package for both academic research and routine analysis at the F
This package can be used for:
\itemize{
\item{Reference for microorganisms, since it contains almost all 60,000 microbial (sub)species from the Catalogue of Life}
\item{Calculating antimicrobial resistance}
\item{Predicting antimicrobial resistance using regression models}
\item{Calculating empirical susceptibility of both mono therapy and combination therapy}
\item{Predicting future antimicrobial resistance using regression models}
\item{Getting properties for any microorganism (like Gram stain, species, genus or family)}
\item{Getting properties for any antibiotic (like name, ATC code, defined daily dose or trade name)}
\item{Plotting antimicrobial resistance}
\item{Determining first isolates to be used for AMR analysis}
\item{Applying EUCAST rules}
\item{Determining multi-drug resistance organisms (MDRO)}
\item{Applying EUCAST expert rules (not the translation from MIC to RSI values)}
\item{Determining multi-drug resistant organisms (MDRO)}
\item{Descriptive statistics: frequency tables, kurtosis and skewness}
}
}
@ -34,7 +36,6 @@ Matthijs S. Berends[1,2] Christian F. Luz[1], Erwin E.A. Hassing[2], Corinna Gl
\section{Read more on our website!}{
\if{html}{\figure{logo.png}{options: height=40px style=margin-bottom:5px} \cr}
On our website \url{https://msberends.gitlab.io/AMR} you can find \href{https://msberends.gitlab.io/AMR/articles/AMR.html}{a comprehensive tutorial} about how to conduct AMR analysis, the \href{https://msberends.gitlab.io/AMR/reference}{complete documentation of all functions} (which reads a lot easier than here in R) and \href{https://msberends.gitlab.io/AMR/articles/WHONET.html}{an example analysis using WHONET data}.
}