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new antibiotics

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dr. M.S. (Matthijs) Berends
2019-05-10 16:44:59 +02:00
parent 73f1ee1159
commit 68cc7ef0d0
147 changed files with 6228 additions and 4187 deletions
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R/first_isolate.R
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@ -98,14 +98,14 @@
#' # Now let's see if first isolates matter:
#' A <- septic_patients %>%
#' group_by(hospital_id) %>%
#' summarise(count = n_rsi(gent), # gentamicin availability
#' resistance = portion_IR(gent)) # gentamicin resistance
#' summarise(count = n_rsi(GEN), # gentamicin availability
#' resistance = portion_IR(GEN)) # gentamicin resistance
#'
#' B <- septic_patients %>%
#' filter_first_weighted_isolate() %>% # the 1st isolate filter
#' filter_first_weighted_isolate() %>% # the 1st isolate filter
#' group_by(hospital_id) %>%
#' summarise(count = n_rsi(gent), # gentamicin availability
#' resistance = portion_IR(gent)) # gentamicin resistance
#' summarise(count = n_rsi(GEN), # gentamicin availability
#' resistance = portion_IR(GEN)) # gentamicin resistance
#'
#' # Have a look at A and B.
#' # B is more reliable because every isolate is only counted once.