mirror of
https://github.com/msberends/AMR.git
synced 2025-07-09 08:11:58 +02:00
new antibiotics
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@ -78,7 +78,7 @@
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</button>
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<span class="navbar-brand">
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<a class="navbar-link" href="../index.html">AMR (for R)</a>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.1.9002</span>
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<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.6.1.9003</span>
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</span>
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</div>
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@ -143,7 +143,7 @@
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</a>
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</li>
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<li>
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<a href="../reference/atc_property.html">
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<a href="../reference/ab_property.html">
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<span class="fa fa-capsules"></span>
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Get properties of an antibiotic
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@ -281,11 +281,23 @@
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<tr>
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<td>
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<p><code><a href="as.atc.html">as.atc()</a></code> <code><a href="as.atc.html">is.atc()</a></code> </p>
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<p><code><a href="as.ab.html">as.ab()</a></code> </p>
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</td>
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<td><p>Transform to antibiotic ID</p></td>
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</tr><tr>
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<td>
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<p><code><a href="as.atc.html">is.ab()</a></code> <code><a href="as.atc.html">as.atc()</a></code> <code><a href="as.atc.html">is.atc()</a></code> </p>
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</td>
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<td><p>Transform to ATC code</p></td>
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</tr><tr>
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<td>
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<p><code><a href="as.disk.html">as.disk()</a></code> <code><a href="as.disk.html">is.disk()</a></code> </p>
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</td>
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<td><p>Class 'disk'</p></td>
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</tr><tr>
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<td>
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<p><code><a href="as.mic.html">as.mic()</a></code> <code><a href="as.mic.html">is.mic()</a></code> </p>
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</td>
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@ -316,6 +328,12 @@
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<td><p>EUCAST rules</p></td>
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</tr><tr>
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<td>
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<p><code><a href="rsi_translation.html">rsi_translation</a></code> </p>
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</td>
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<td><p>Data set for RSI interpretation</p></td>
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</tr><tr>
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<td>
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<p><code><a href="guess_ab_col.html">guess_ab_col()</a></code> </p>
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</td>
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@ -361,23 +379,11 @@
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</tr><tr>
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<td>
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<p><code><a href="atc_property.html">atc_property()</a></code> <code><a href="atc_property.html">atc_official()</a></code> <code><a href="atc_property.html">atc_name()</a></code> <code><a href="atc_property.html">atc_trivial_nl()</a></code> <code><a href="atc_property.html">atc_certe()</a></code> <code><a href="atc_property.html">atc_umcg()</a></code> <code><a href="atc_property.html">atc_tradenames()</a></code> </p>
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<p><code><a href="ab_property.html">ab_name()</a></code> <code><a href="ab_property.html">ab_atc()</a></code> <code><a href="ab_property.html">ab_cid()</a></code> <code><a href="ab_property.html">ab_synonyms()</a></code> <code><a href="ab_property.html">ab_tradenames()</a></code> <code><a href="ab_property.html">ab_group()</a></code> <code><a href="ab_property.html">ab_atc_group1()</a></code> <code><a href="ab_property.html">ab_atc_group2()</a></code> <code><a href="ab_property.html">ab_ddd()</a></code> <code><a href="ab_property.html">ab_property()</a></code> </p>
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</td>
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<td><p>Property of an antibiotic</p></td>
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</tr><tr>
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<td>
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<p><code><a href="atc_online.html">atc_online_property()</a></code> <code><a href="atc_online.html">atc_online_groups()</a></code> <code><a href="atc_online.html">atc_online_ddd()</a></code> </p>
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</td>
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<td><p>Get ATC properties from WHOCC website</p></td>
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</tr><tr>
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<td>
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<p><code><a href="abname.html">abname()</a></code> </p>
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</td>
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<td><p>Name of an antibiotic</p></td>
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</tr><tr>
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<td>
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<p><code><a href="age.html">age()</a></code> </p>
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</td>
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@ -400,6 +406,12 @@
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<p><code><a href="join.html">inner_join_microorganisms()</a></code> <code><a href="join.html">left_join_microorganisms()</a></code> <code><a href="join.html">right_join_microorganisms()</a></code> <code><a href="join.html">full_join_microorganisms()</a></code> <code><a href="join.html">semi_join_microorganisms()</a></code> <code><a href="join.html">anti_join_microorganisms()</a></code> </p>
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</td>
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<td><p>Join a table with <code>microorganisms</code></p></td>
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</tr><tr>
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<td>
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<p><code><a href="atc_online.html">atc_online_property()</a></code> <code><a href="atc_online.html">atc_online_groups()</a></code> <code><a href="atc_online.html">atc_online_ddd()</a></code> </p>
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</td>
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<td><p>Get ATC properties from WHOCC website</p></td>
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</tr>
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</tbody><tbody>
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<tr>
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@ -464,12 +476,6 @@
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<td><p>Predict antimicrobial resistance</p></td>
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</tr><tr>
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<td>
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<p><code><a href="rsi.html">rsi()</a></code> </p>
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</td>
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<td><p>Calculate resistance of isolates</p></td>
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</tr><tr>
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<td>
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<p><code><a href="skewness.html">skewness()</a></code> </p>
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</td>
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@ -487,7 +493,7 @@
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<td>
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<p><code><a href="antibiotics.html">antibiotics</a></code> </p>
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</td>
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<td><p>Data set with ~500 antibiotics</p></td>
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<td><p>Data set with ~450 antibiotics</p></td>
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</tr><tr>
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<td>
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@ -529,9 +535,9 @@
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<tr>
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<td>
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<p><code><a href="get_locale.html">get_locale()</a></code> </p>
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<p><code><a href="translate.html">get_locale()</a></code> </p>
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</td>
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<td><p>Get language for AMR</p></td>
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<td><p>Translate strings from AMR package</p></td>
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</tr><tr>
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<td>
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@ -549,7 +555,7 @@
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<tr>
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<td>
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<p><code><a href="AMR-deprecated.html">ratio()</a></code> <code><a href="AMR-deprecated.html">ab_property()</a></code> <code><a href="AMR-deprecated.html">ab_atc()</a></code> <code><a href="AMR-deprecated.html">ab_official()</a></code> <code><a href="AMR-deprecated.html">ab_name()</a></code> <code><a href="AMR-deprecated.html">ab_trivial_nl()</a></code> <code><a href="AMR-deprecated.html">ab_certe()</a></code> <code><a href="AMR-deprecated.html">ab_umcg()</a></code> <code><a href="AMR-deprecated.html">ab_tradenames()</a></code> <code><a href="AMR-deprecated.html">atc_ddd()</a></code> <code><a href="AMR-deprecated.html">atc_groups()</a></code> </p>
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<p><code><a href="AMR-deprecated.html">ratio()</a></code> <code><a href="AMR-deprecated.html">abname()</a></code> <code><a href="AMR-deprecated.html">atc_property()</a></code> <code><a href="AMR-deprecated.html">atc_official()</a></code> <code><a href="AMR-deprecated.html">ab_official()</a></code> <code><a href="AMR-deprecated.html">atc_name()</a></code> <code><a href="AMR-deprecated.html">atc_trivial_nl()</a></code> <code><a href="AMR-deprecated.html">atc_tradenames()</a></code> </p>
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</td>
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<td><p>Deprecated functions</p></td>
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</tr>
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