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new antibiotics

This commit is contained in:
2019-05-10 16:44:59 +02:00
parent 73f1ee1159
commit 68cc7ef0d0
147 changed files with 6228 additions and 4187 deletions

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if_mo_property like_is_one_of this_value and_these_antibiotics have_these_values then_change_these_antibiotics to_value reference.rule reference.rule_group
order is Enterobacteriales ampi S amox S Enterobacteriales (Order) Breakpoints
order is Enterobacteriales ampi I amox I Enterobacteriales (Order) Breakpoints
order is Enterobacteriales ampi R amox R Enterobacteriales (Order) Breakpoints
genus is Staphylococcus peni, cfox S ampi, amox, pipe, tica S Staphylococcus Breakpoints
genus is Staphylococcus peni, cfox R, S oxac, clox S Staphylococcus Breakpoints
genus is Staphylococcus cfox R all_betalactams R Staphylococcus Breakpoints
genus_species is Staphylococcus saprophyticus ampi S amox, amcl, pipe, pita S Staphylococcus Breakpoints
genus is Staphylococcus cfox S carbapenems, cephalosporins_without_cfta S Staphylococcus Breakpoints
genus is Staphylococcus cfox I carbapenems, cephalosporins_without_cfta I Staphylococcus Breakpoints
genus is Staphylococcus cfox R carbapenems, cephalosporins_without_cfta R Staphylococcus Breakpoints
genus is Staphylococcus norf S cipr, levo, moxi, oflo S Staphylococcus Breakpoints
genus is Staphylococcus eryt S azit, clar, roxi S Staphylococcus Breakpoints
genus is Staphylococcus eryt I azit, clar, roxi I Staphylococcus Breakpoints
genus is Staphylococcus eryt R azit, clar, roxi R Staphylococcus Breakpoints
genus is Staphylococcus tetr S doxy, mino S Staphylococcus Breakpoints
genus_species is Enterococcus faecium ampi R all_betalactams R Enterococcus Breakpoints
genus is Enterococcus ampi S amox, amcl, pipe, pita S Enterococcus Breakpoints
genus is Enterococcus ampi I amox, amcl, pipe, pita I Enterococcus Breakpoints
genus is Enterococcus ampi R amox, amcl, pipe, pita R Enterococcus Breakpoints
genus is Enterococcus norf S cipr, levo S Enterococcus Breakpoints
genus is Enterococcus norf I cipr, levo I Enterococcus Breakpoints
genus is Enterococcus norf R cipr, levo R Enterococcus Breakpoints
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ peni S aminopenicillins, ureidopenicillins, cephalosporins, carbapenems, clox, amcl S Streptococcus groups A, B, C, G Breakpoints
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ peni I aminopenicillins, ureidopenicillins, cephalosporins, carbapenems, clox, amcl I Streptococcus groups A, B, C, G Breakpoints
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ peni R aminopenicillins, ureidopenicillins, cephalosporins, carbapenems, clox, amcl R Streptococcus groups A, B, C, G Breakpoints
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ norf S levo, moxi S Streptococcus groups A, B, C, G Breakpoints
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ eryt S azit, clar, roxi S Streptococcus groups A, B, C, G Breakpoints
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ eryt I azit, clar, roxi I Streptococcus groups A, B, C, G Breakpoints
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ eryt R azit, clar, roxi R Streptococcus groups A, B, C, G Breakpoints
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ tetr S doxy, mino S Streptococcus groups A, B, C, G Breakpoints
genus_species is Streptococcus pneumoniae peni S ampi, amox, amcl, pipe, pita S Streptococcus pneumoniae Breakpoints
genus_species is Streptococcus pneumoniae ampi S amox, amcl, pipe, pita S Streptococcus pneumoniae Breakpoints
genus_species is Streptococcus pneumoniae ampi I amox, amcl, pipe, pita I Streptococcus pneumoniae Breakpoints
genus_species is Streptococcus pneumoniae ampi R amox, amcl, pipe, pita R Streptococcus pneumoniae Breakpoints
genus_species is Streptococcus pneumoniae norf S levo, moxi S Streptococcus pneumoniae Breakpoints
genus_species is Streptococcus pneumoniae eryt S azit, clar, roxi S Streptococcus pneumoniae Breakpoints
genus_species is Streptococcus pneumoniae eryt I azit, clar, roxi I Streptococcus pneumoniae Breakpoints
genus_species is Streptococcus pneumoniae eryt R azit, clar, roxi R Streptococcus pneumoniae Breakpoints
genus_species is Streptococcus pneumoniae tetr S doxy, mino S Streptococcus pneumoniae Breakpoints
genus_species like ^Streptococcus (australis|bovis|constellatus|cristatus|gallolyticus|gordonii|infantarius|infantis|mitis|mutans|oligofermentans|oralis|peroris|pseudopneumoniae|salivarius|sinensis|sobrinus|thermophilus|vestibularis|anginosus|equinus|intermedius|parasanguinis|sanguinis)$ peni S ampi, amox, amcl, pipe, pita S Viridans group streptococci Breakpoints
genus_species like ^Streptococcus (australis|bovis|constellatus|cristatus|gallolyticus|gordonii|infantarius|infantis|mitis|mutans|oligofermentans|oralis|peroris|pseudopneumoniae|salivarius|sinensis|sobrinus|thermophilus|vestibularis|anginosus|equinus|intermedius|parasanguinis|sanguinis)$ ampi S amox, amcl, pipe, pita S Viridans group streptococci Breakpoints
genus_species like ^Streptococcus (australis|bovis|constellatus|cristatus|gallolyticus|gordonii|infantarius|infantis|mitis|mutans|oligofermentans|oralis|peroris|pseudopneumoniae|salivarius|sinensis|sobrinus|thermophilus|vestibularis|anginosus|equinus|intermedius|parasanguinis|sanguinis)$ ampi I amox, amcl, pipe, pita I Viridans group streptococci Breakpoints
genus_species like ^Streptococcus (australis|bovis|constellatus|cristatus|gallolyticus|gordonii|infantarius|infantis|mitis|mutans|oligofermentans|oralis|peroris|pseudopneumoniae|salivarius|sinensis|sobrinus|thermophilus|vestibularis|anginosus|equinus|intermedius|parasanguinis|sanguinis)$ ampi R amox, amcl, pipe, pita R Viridans group streptococci Breakpoints
genus_species is Haemophilus influenzae ampi S amox, pipe S Haemophilus influenzae Breakpoints
genus_species is ^Haemophilus influenzae ampi I amox, pipe I Haemophilus influenzae Breakpoints
genus_species is Haemophilus influenzae ampi R amox, pipe R Haemophilus influenzae Breakpoints
genus_species is Haemophilus influenzae peni S ampi, amox, amcl, pipe, pita S Haemophilus influenzae Breakpoints
genus_species is Haemophilus influenzae amcl S pita S Haemophilus influenzae Breakpoints
genus_species is Haemophilus influenzae amcl I pita I Haemophilus influenzae Breakpoints
genus_species is Haemophilus influenzae amcl R pita R Haemophilus influenzae Breakpoints
genus_species is Haemophilus influenzae nali S cipr, levo, moxi, oflo S Haemophilus influenzae Breakpoints
genus_species is Haemophilus influenzae tetr S doxy, mino S Haemophilus influenzae Breakpoints
genus_species is Moraxella catarrhalis amcl S pita S Moraxella catarrhalis Breakpoints
genus_species is Moraxella catarrhalis amcl I pita I Moraxella catarrhalis Breakpoints
genus_species is Moraxella catarrhalis amcl R pita R Moraxella catarrhalis Breakpoints
genus_species is Moraxella catarrhalis nali S cipr, levo, moxi, oflo S Moraxella catarrhalis Breakpoints
genus_species is Moraxella catarrhalis eryt S azit, clar, roxi S Moraxella catarrhalis Breakpoints
genus_species is Moraxella catarrhalis eryt I azit, clar, roxi I Moraxella catarrhalis Breakpoints
genus_species is Moraxella catarrhalis eryt R azit, clar, roxi R Moraxella catarrhalis Breakpoints
genus_species is Moraxella catarrhalis tetr S doxy, mino S Moraxella catarrhalis Breakpoints
genus one_of Actinomyces, Bifidobacterium, Clostridium, Cutibacterium, Eggerthella, Eubacterium, Lactobacillus , Propionibacterium peni S ampi, amox, pipe, pita, tica S Anaerobic Gram positives Breakpoints
genus one_of Actinomyces, Bifidobacterium, Clostridium, Cutibacterium, Eggerthella, Eubacterium, Lactobacillus , Propionibacterium peni I ampi, amox, pipe, pita, tica I Anaerobic Gram positives Breakpoints
genus one_of Actinomyces, Bifidobacterium, Clostridium, Cutibacterium, Eggerthella, Eubacterium, Lactobacillus , Propionibacterium peni R ampi, amox, pipe, pita, tica R Anaerobic Gram positives Breakpoints
genus one_of Bacteroides, Bilophila , Fusobacterium, Mobiluncus, Porphyromonas, Prevotella peni S ampi, amox, pipe, pita, tica S Anaerobic Gram negatives Breakpoints
genus one_of Bacteroides, Bilophila , Fusobacterium, Mobiluncus, Porphyromonas, Prevotella peni I ampi, amox, pipe, pita, tica I Anaerobic Gram negatives Breakpoints
genus one_of Bacteroides, Bilophila , Fusobacterium, Mobiluncus, Porphyromonas, Prevotella peni R ampi, amox, pipe, pita, tica R Anaerobic Gram negatives Breakpoints
genus_species is Pasteurella multocida peni S ampi, amox S Pasteurella multocida Breakpoints
genus_species is Pasteurella multocida peni I ampi, amox I Pasteurella multocida Breakpoints
genus_species is Pasteurella multocida peni R ampi, amox R Pasteurella multocida Breakpoints
genus_species is Campylobacter coli eryt S azit, clar S Campylobacter coli Breakpoints
genus_species is Campylobacter coli eryt I azit, clar I Campylobacter coli Breakpoints
genus_species is Campylobacter coli eryt R azit, clar R Campylobacter coli Breakpoints
genus_species is Campylobacter coli tetr S doxy S Campylobacter coli Breakpoints
genus_species is Campylobacter coli tetr I doxy I Campylobacter coli Breakpoints
genus_species is Campylobacter coli tetr R doxy R Campylobacter coli Breakpoints
genus_species is Campylobacter jejuni eryt S azit, clar S Campylobacter jejuni Breakpoints
genus_species is Campylobacter jejuni eryt I azit, clar I Campylobacter jejuni Breakpoints
genus_species is Campylobacter jejuni eryt R azit, clar R Campylobacter jejuni Breakpoints
genus_species is Campylobacter jejuni tetr S doxy S Campylobacter jejuni Breakpoints
genus_species is Campylobacter jejuni tetr I doxy I Campylobacter jejuni Breakpoints
genus_species is Campylobacter jejuni tetr R doxy R Campylobacter jejuni Breakpoints
genus_species is Aerococcus sanguinicola norf S fluoroquinolones S Aerococcus sanguinicola Breakpoints
genus_species is Aerococcus sanguinicola norf I fluoroquinolones I Aerococcus sanguinicola Breakpoints
genus_species is Aerococcus sanguinicola norf R fluoroquinolones R Aerococcus sanguinicola Breakpoints
genus_species is Aerococcus sanguinicola cipr S levo S Aerococcus sanguinicola Breakpoints
genus_species is Aerococcus sanguinicola cipr I levo I Aerococcus sanguinicola Breakpoints
genus_species is Aerococcus sanguinicola cipr R levo R Aerococcus urinae Breakpoints
genus_species is Aerococcus urinae norf S fluoroquinolones S Aerococcus urinae Breakpoints
genus_species is Aerococcus urinae norf I fluoroquinolones I Aerococcus urinae Breakpoints
genus_species is Aerococcus urinae norf R fluoroquinolones R Aerococcus urinae Breakpoints
genus_species is Aerococcus urinae cipr S levo S Aerococcus urinae Breakpoints
genus_species is Aerococcus urinae cipr I levo I Aerococcus urinae Breakpoints
genus_species is Aerococcus urinae cipr R levo R Aerococcus urinae Breakpoints
genus_species is Kingella kingae peni S ampi, amox S Kingella kingae Breakpoints
genus_species is Kingella kingae peni I ampi, amox I Kingella kingae Breakpoints
genus_species is Kingella kingae peni R ampi, amox R Kingella kingae Breakpoints
genus_species is Kingella kingae eryt S azit, clar S Kingella kingae Breakpoints
genus_species is Kingella kingae eryt I azit, clar I Kingella kingae Breakpoints
genus_species is Kingella kingae eryt R azit, clar R Kingella kingae Breakpoints
genus_species is Kingella kingae tetr S doxy S Kingella kingae Breakpoints
family is Enterobacteriaceae peni, glycopeptides, fusi, macrolides, linc, streptogramins, rifa, dapt, line R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
fullname like ^Citrobacter (koseri|amalonaticus|sedlakii|farmeri|rodentium) aminopenicillins, tica R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
fullname like ^Citrobacter (freundii|braakii|murliniae|werkmanii|youngae) aminopenicillins, amcl, czol, cfox R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Enterobacter cloacae aminopenicillins, amcl, czol, cfox R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Enterobacter aerogenes aminopenicillins, amcl, czol, cfox R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Escherichia hermanni aminopenicillins, tica R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Hafnia alvei aminopenicillins, amcl, czol, cfox R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus is Klebsiella aminopenicillins, tica R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Morganella morganii aminopenicillins, amcl, czol, tetracyclines, polymyxins, nitr R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Proteus mirabilis tetracyclines, tige, polymyxins, nitr R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Proteus penneri aminopenicillins, czol, cfur, tetracyclines, tige, polymyxins, nitr R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Proteus vulgaris aminopenicillins, czol, cfur, tetracyclines, tige, polymyxins, nitr R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Providencia rettgeri aminopenicillins, amcl, czol, cfur, tetracyclines, tige, polymyxins, nitr R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Providencia stuartii aminopenicillins, amcl, czol, cfur, tetracyclines, tige, polymyxins, nitr R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus is Raoultella aminopenicillins, tica R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Serratia marcescens aminopenicillins, amcl, czol, cfox, cfur, tetracyclines[tetracyclines != na.rm(mino)], polymyxins, nitr R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Yersinia enterocolitica aminopenicillins, amcl, tica, czol, cfox R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Yersinia pseudotuberculosis poly, coli R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus one_of Achromobacter, Acinetobacter, Alcaligenes, Bordatella, Burkholderia, Elizabethkingia, Flavobacterium, Ochrobactrum, Pseudomonas, Stenotrophomonas peni, cfox, cfur, glycopeptides, fusi, macrolides, linc, streptogramins, rifa, dapt, line R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus_species is Acinetobacter baumannii aminopenicillins, amcl, czol, cfot, cftr, aztr, erta, trim, fosf, doxy, tetr R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus_species is Acinetobacter pittii aminopenicillins, amcl, czol, cfot, cftr, aztr, erta, trim, fosf, doxy, tetr R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus_species is Acinetobacter nosocomialis aminopenicillins, amcl, czol, cfot, cftr, aztr, erta, trim, fosf, doxy, tetr R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus_species is Acinetobacter calcoaceticus aminopenicillins, amcl, czol, cfot, cftr, aztr, erta, trim, fosf, doxy, tetr R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus_species is Achromobacter xylosoxidans aminopenicillins, czol, cfot, cftr, erta R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
fullname like ^Burkholderia (cepacia|multivorans|cenocepacia|stabilis|vietnamiensis|dolosa|ambifaria|anthina|pyrrocinia|ubonensis) aminopenicillins, amcl, tica, pipe, pita, czol, cfot, cftr, aztr, erta, cipr, chlo, aminoglycosides, trim, fosf, polymyxins R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus_species is Elizabethkingia meningoseptica aminopenicillins, amcl, tica, czol, cfot, cftr, cfta, cfep, aztr, erta, imip, mero, polymyxins R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus_species is Ochrobactrum anthropi aminopenicillins, amcl, tica, pipe, pita, czol, cfot, cftr, cfta, cfep, aztr, erta R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus_species is Pseudomonas aeruginosa aminopenicillins, amcl, czol, cfot, cftr, erta, chlo, kana, neom, trim, trsu, tetracyclines, tige R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus_species is Stenotrophomonas maltophilia aminopenicillins, amcl, tica, pipe, pita, czol, cfot, cftr, cfta, aztr, erta, imip, mero, aminoglycosides, trim, fosf, tetr R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus one_of Haemophilus, Moraxella, Neisseria, Campylobacter glycopeptides, linc, dapt, line R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
genus_species is Haemophilus influenzae fusi, streptogramins R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
genus_species is Moraxella catarrhalis trim R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
genus is Neisseria trim R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
genus_species is Campylobacter fetus fusi, streptogramins, trim, nali R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
genus_species is Campylobacter jejuni fusi, streptogramins, trim R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
genus_species is Campylobacter coli fusi, streptogramins, trim R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
gramstain is Gram positive aztr, polymyxins, nali R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus saprophyticus fusi, cfta, fosf, novo R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus cohnii cfta, novo R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus xylosus cfta, novo R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus capitis cfta, fosf R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus aureus cfta R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus epidermidis cfta R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus coagulase-negative cfta R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus hominis cfta R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus haemolyticus cfta R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus intermedius cfta R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus pseudintermedius cfta R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus is Streptococcus fusi, cfta, aminoglycosides R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Enterococcus faecalis fusi, cfta, cephalosporins_without_cfta, aminoglycosides, macrolides, clin, qida, trim, trsu R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Enterococcus gallinarum fusi, cfta, cephalosporins_without_cfta, aminoglycosides, macrolides, clin, qida, vanc, trim, trsu R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Enterococcus casseliflavus fusi, cfta, cephalosporins_without_cfta, aminoglycosides, macrolides, clin, qida, vanc, trim, trsu R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Enterococcus faecium fusi, cfta, cephalosporins_without_cfta, aminoglycosides, macrolides, trim, trsu R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus is Corynebacterium fosf R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
order is Enterobacteriales AMP S AMX S Enterobacteriales (Order) Breakpoints
order is Enterobacteriales AMP I AMX I Enterobacteriales (Order) Breakpoints
order is Enterobacteriales AMP R AMX R Enterobacteriales (Order) Breakpoints
genus is Staphylococcus PEN, FOX S AMP, AMX, PIP, TIC S Staphylococcus Breakpoints
genus is Staphylococcus PEN, FOX R, S OXA, FLC S Staphylococcus Breakpoints
genus is Staphylococcus FOX R all_betalactams R Staphylococcus Breakpoints
genus_species is Staphylococcus saprophyticus AMP S AMX, AMC, PIP, TZP S Staphylococcus Breakpoints
genus is Staphylococcus FOX S carbapenems, cephalosporins_without_CAZ S Staphylococcus Breakpoints
genus is Staphylococcus FOX I carbapenems, cephalosporins_without_CAZ I Staphylococcus Breakpoints
genus is Staphylococcus FOX R carbapenems, cephalosporins_without_CAZ R Staphylococcus Breakpoints
genus is Staphylococcus NOR S CIP, LVX, MFX, OFX S Staphylococcus Breakpoints
genus is Staphylococcus ERY S AZM, CLR, RXT S Staphylococcus Breakpoints
genus is Staphylococcus ERY I AZM, CLR, RXT I Staphylococcus Breakpoints
genus is Staphylococcus ERY R AZM, CLR, RXT R Staphylococcus Breakpoints
genus is Staphylococcus TCY S DOX, MNO S Staphylococcus Breakpoints
genus_species is Enterococcus faecium AMP R all_betalactams R Enterococcus Breakpoints
genus is Enterococcus AMP S AMX, AMC, PIP, TZP S Enterococcus Breakpoints
genus is Enterococcus AMP I AMX, AMC, PIP, TZP I Enterococcus Breakpoints
genus is Enterococcus AMP R AMX, AMC, PIP, TZP R Enterococcus Breakpoints
genus is Enterococcus NOR S CIP, LVX S Enterococcus Breakpoints
genus is Enterococcus NOR I CIP, LVX I Enterococcus Breakpoints
genus is Enterococcus NOR R CIP, LVX R Enterococcus Breakpoints
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ PEN S aminopenicillins, ureidopenicillins, cephalosporins_without_CAZ, carbapenems, FLC, AMC S Streptococcus groups A, B, C, G Breakpoints
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ PEN I aminopenicillins, ureidopenicillins, cephalosporins_without_CAZ, carbapenems, FLC, AMC I Streptococcus groups A, B, C, G Breakpoints
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ PEN R aminopenicillins, ureidopenicillins, cephalosporins_without_CAZ, carbapenems, FLC, AMC R Streptococcus groups A, B, C, G Breakpoints
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ NOR S LVX, MFX S Streptococcus groups A, B, C, G Breakpoints
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ ERY S AZM, CLR, RXT S Streptococcus groups A, B, C, G Breakpoints
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ ERY I AZM, CLR, RXT I Streptococcus groups A, B, C, G Breakpoints
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ ERY R AZM, CLR, RXT R Streptococcus groups A, B, C, G Breakpoints
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ TCY S DOX, MNO S Streptococcus groups A, B, C, G Breakpoints
genus_species is Streptococcus pneumoniae PEN S AMP, AMX, AMC, PIP, TZP S Streptococcus pneumoniae Breakpoints
genus_species is Streptococcus pneumoniae AMP S AMX, AMC, PIP, TZP S Streptococcus pneumoniae Breakpoints
genus_species is Streptococcus pneumoniae AMP I AMX, AMC, PIP, TZP I Streptococcus pneumoniae Breakpoints
genus_species is Streptococcus pneumoniae AMP R AMX, AMC, PIP, TZP R Streptococcus pneumoniae Breakpoints
genus_species is Streptococcus pneumoniae NOR S LVX, MFX S Streptococcus pneumoniae Breakpoints
genus_species is Streptococcus pneumoniae ERY S AZM, CLR, RXT S Streptococcus pneumoniae Breakpoints
genus_species is Streptococcus pneumoniae ERY I AZM, CLR, RXT I Streptococcus pneumoniae Breakpoints
genus_species is Streptococcus pneumoniae ERY R AZM, CLR, RXT R Streptococcus pneumoniae Breakpoints
genus_species is Streptococcus pneumoniae TCY S DOX, MNO S Streptococcus pneumoniae Breakpoints
genus_species like ^Streptococcus (australis|bovis|constellatus|cristatus|gallolyticus|gordonii|infantarius|infantis|mitis|mutans|oligofermentans|oralis|peroris|pseudopneumoniae|salivarius|sinensis|sobrinus|thermophilus|vestibularis|anginosus|equinus|intermedius|parasanguinis|sanguinis)$ PEN S AMP, AMX, AMC, PIP, TZP S Viridans group streptococci Breakpoints
genus_species like ^Streptococcus (australis|bovis|constellatus|cristatus|gallolyticus|gordonii|infantarius|infantis|mitis|mutans|oligofermentans|oralis|peroris|pseudopneumoniae|salivarius|sinensis|sobrinus|thermophilus|vestibularis|anginosus|equinus|intermedius|parasanguinis|sanguinis)$ AMP S AMX, AMC, PIP, TZP S Viridans group streptococci Breakpoints
genus_species like ^Streptococcus (australis|bovis|constellatus|cristatus|gallolyticus|gordonii|infantarius|infantis|mitis|mutans|oligofermentans|oralis|peroris|pseudopneumoniae|salivarius|sinensis|sobrinus|thermophilus|vestibularis|anginosus|equinus|intermedius|parasanguinis|sanguinis)$ AMP I AMX, AMC, PIP, TZP I Viridans group streptococci Breakpoints
genus_species like ^Streptococcus (australis|bovis|constellatus|cristatus|gallolyticus|gordonii|infantarius|infantis|mitis|mutans|oligofermentans|oralis|peroris|pseudopneumoniae|salivarius|sinensis|sobrinus|thermophilus|vestibularis|anginosus|equinus|intermedius|parasanguinis|sanguinis)$ AMP R AMX, AMC, PIP, TZP R Viridans group streptococci Breakpoints
genus_species is Haemophilus influenzae AMP S AMX, PIP S Haemophilus influenzae Breakpoints
genus_species is ^Haemophilus influenzae AMP I AMX, PIP I Haemophilus influenzae Breakpoints
genus_species is Haemophilus influenzae AMP R AMX, PIP R Haemophilus influenzae Breakpoints
genus_species is Haemophilus influenzae PEN S AMP, AMX, AMC, PIP, TZP S Haemophilus influenzae Breakpoints
genus_species is Haemophilus influenzae AMC S TZP S Haemophilus influenzae Breakpoints
genus_species is Haemophilus influenzae AMC I TZP I Haemophilus influenzae Breakpoints
genus_species is Haemophilus influenzae AMC R TZP R Haemophilus influenzae Breakpoints
genus_species is Haemophilus influenzae NAL S CIP, LVX, MFX, OFX S Haemophilus influenzae Breakpoints
genus_species is Haemophilus influenzae TCY S DOX, MNO S Haemophilus influenzae Breakpoints
genus_species is Moraxella catarrhalis AMC S TZP S Moraxella catarrhalis Breakpoints
genus_species is Moraxella catarrhalis AMC I TZP I Moraxella catarrhalis Breakpoints
genus_species is Moraxella catarrhalis AMC R TZP R Moraxella catarrhalis Breakpoints
genus_species is Moraxella catarrhalis NAL S CIP, LVX, MFX, OFX S Moraxella catarrhalis Breakpoints
genus_species is Moraxella catarrhalis ERY S AZM, CLR, RXT S Moraxella catarrhalis Breakpoints
genus_species is Moraxella catarrhalis ERY I AZM, CLR, RXT I Moraxella catarrhalis Breakpoints
genus_species is Moraxella catarrhalis ERY R AZM, CLR, RXT R Moraxella catarrhalis Breakpoints
genus_species is Moraxella catarrhalis TCY S DOX, MNO S Moraxella catarrhalis Breakpoints
genus one_of Actinomyces, Bifidobacterium, Clostridium, Cutibacterium, Eggerthella, Eubacterium, Lactobacillus, Propionibacterium PEN S AMP, AMX, PIP, TZP, TIC S Anaerobic Gram positives Breakpoints
genus one_of Actinomyces, Bifidobacterium, Clostridium, Cutibacterium, Eggerthella, Eubacterium, Lactobacillus, Propionibacterium PEN I AMP, AMX, PIP, TZP, TIC I Anaerobic Gram positives Breakpoints
genus one_of Actinomyces, Bifidobacterium, Clostridium, Cutibacterium, Eggerthella, Eubacterium, Lactobacillus, Propionibacterium PEN R AMP, AMX, PIP, TZP, TIC R Anaerobic Gram positives Breakpoints
genus one_of Bacteroides, Bilophila , Fusobacterium, Mobiluncus, Porphyromonas, Prevotella PEN S AMP, AMX, PIP, TZP, TIC S Anaerobic Gram negatives Breakpoints
genus one_of Bacteroides, Bilophila , Fusobacterium, Mobiluncus, Porphyromonas, Prevotella PEN I AMP, AMX, PIP, TZP, TIC I Anaerobic Gram negatives Breakpoints
genus one_of Bacteroides, Bilophila , Fusobacterium, Mobiluncus, Porphyromonas, Prevotella PEN R AMP, AMX, PIP, TZP, TIC R Anaerobic Gram negatives Breakpoints
genus_species is Pasteurella multocida PEN S AMP, AMX S Pasteurella multocida Breakpoints
genus_species is Pasteurella multocida PEN I AMP, AMX I Pasteurella multocida Breakpoints
genus_species is Pasteurella multocida PEN R AMP, AMX R Pasteurella multocida Breakpoints
genus_species is Campylobacter coli ERY S AZM, CLR S Campylobacter coli Breakpoints
genus_species is Campylobacter coli ERY I AZM, CLR I Campylobacter coli Breakpoints
genus_species is Campylobacter coli ERY R AZM, CLR R Campylobacter coli Breakpoints
genus_species is Campylobacter coli TCY S DOX S Campylobacter coli Breakpoints
genus_species is Campylobacter coli TCY I DOX I Campylobacter coli Breakpoints
genus_species is Campylobacter coli TCY R DOX R Campylobacter coli Breakpoints
genus_species is Campylobacter jejuni ERY S AZM, CLR S Campylobacter jejuni Breakpoints
genus_species is Campylobacter jejuni ERY I AZM, CLR I Campylobacter jejuni Breakpoints
genus_species is Campylobacter jejuni ERY R AZM, CLR R Campylobacter jejuni Breakpoints
genus_species is Campylobacter jejuni TCY S DOX S Campylobacter jejuni Breakpoints
genus_species is Campylobacter jejuni TCY I DOX I Campylobacter jejuni Breakpoints
genus_species is Campylobacter jejuni TCY R DOX R Campylobacter jejuni Breakpoints
genus_species is Aerococcus sanguinicola NOR S fluoroquinolones S Aerococcus sanguinicola Breakpoints
genus_species is Aerococcus sanguinicola NOR I fluoroquinolones I Aerococcus sanguinicola Breakpoints
genus_species is Aerococcus sanguinicola NOR R fluoroquinolones R Aerococcus sanguinicola Breakpoints
genus_species is Aerococcus sanguinicola CIP S LVX S Aerococcus sanguinicola Breakpoints
genus_species is Aerococcus sanguinicola CIP I LVX I Aerococcus sanguinicola Breakpoints
genus_species is Aerococcus sanguinicola CIP R LVX R Aerococcus urinae Breakpoints
genus_species is Aerococcus urinae NOR S fluoroquinolones S Aerococcus urinae Breakpoints
genus_species is Aerococcus urinae NOR I fluoroquinolones I Aerococcus urinae Breakpoints
genus_species is Aerococcus urinae NOR R fluoroquinolones R Aerococcus urinae Breakpoints
genus_species is Aerococcus urinae CIP S LVX S Aerococcus urinae Breakpoints
genus_species is Aerococcus urinae CIP I LVX I Aerococcus urinae Breakpoints
genus_species is Aerococcus urinae CIP R LVX R Aerococcus urinae Breakpoints
genus_species is Kingella kingae PEN S AMP, AMX S Kingella kingae Breakpoints
genus_species is Kingella kingae PEN I AMP, AMX I Kingella kingae Breakpoints
genus_species is Kingella kingae PEN R AMP, AMX R Kingella kingae Breakpoints
genus_species is Kingella kingae ERY S AZM, CLR S Kingella kingae Breakpoints
genus_species is Kingella kingae ERY I AZM, CLR I Kingella kingae Breakpoints
genus_species is Kingella kingae ERY R AZM, CLR R Kingella kingae Breakpoints
genus_species is Kingella kingae TCY S DOX S Kingella kingae Breakpoints
family is Enterobacteriaceae PEN, glycopeptides, FUS, macrolides, LIN, streptogramins, RIF, DAP, LNZ R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
fullname like ^Citrobacter (koseri|amalonaticus|sedlakii|farmeri|rodentium) aminopenicillins, TIC R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
fullname like ^Citrobacter (freundii|braakii|murliniae|werkmanii|youngae) aminopenicillins, AMC, CZO, FOX R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Enterobacter cloacae aminopenicillins, AMC, CZO, FOX R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Enterobacter aerogenes aminopenicillins, AMC, CZO, FOX R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Escherichia hermanni aminopenicillins, TIC R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Hafnia alvei aminopenicillins, AMC, CZO, FOX R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus is Klebsiella aminopenicillins, TIC R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Morganella morganii aminopenicillins, AMC, CZO, tetracyclines, polymyxins, NIT R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Proteus mirabilis tetracyclines, TGC, polymyxins, NIT R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Proteus penneri aminopenicillins, CZO, CXM, tetracyclines, TGC, polymyxins, NIT R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Proteus vulgaris aminopenicillins, CZO, CXM, tetracyclines, TGC, polymyxins, NIT R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Providencia rettgeri aminopenicillins, AMC, CZO, CXM, tetracyclines, TGC, polymyxins, NIT R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Providencia stuartii aminopenicillins, AMC, CZO, CXM, tetracyclines, TGC, polymyxins, NIT R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus is Raoultella aminopenicillins, TIC R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Serratia marcescens aminopenicillins, AMC, CZO, FOX, CXM, DOX, TCY, polymyxins, NIT R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Yersinia enterocolitica aminopenicillins, AMC, TIC, CZO, FOX R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Yersinia pseudotuberculosis poly, COL R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus one_of Achromobacter, Acinetobacter, Alcaligenes, Bordatella, Burkholderia, Elizabethkingia, Flavobacterium, Ochrobactrum, Pseudomonas, Stenotrophomonas PEN, FOX, CXM, glycopeptides, FUS, macrolides, LIN, streptogramins, RIF, DAP, LNZ R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus_species is Acinetobacter baumannii aminopenicillins, AMC, CZO, CTX, CRO, ATM, ETP, TMP, FOS, DOX, TCY R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus_species is Acinetobacter pittii aminopenicillins, AMC, CZO, CTX, CRO, ATM, ETP, TMP, FOS, DOX, TCY R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus_species is Acinetobacter nosocomialis aminopenicillins, AMC, CZO, CTX, CRO, ATM, ETP, TMP, FOS, DOX, TCY R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus_species is Acinetobacter calcoaceticus aminopenicillins, AMC, CZO, CTX, CRO, ATM, ETP, TMP, FOS, DOX, TCY R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus_species is Achromobacter xylosoxidans aminopenicillins, CZO, CTX, CRO, ETP R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
fullname like ^Burkholderia (cepacia|multivorans|cenocepacia|stabilis|vietnamiensis|dolosa|ambifaria|anthina|pyrrocinia|ubonensis) aminopenicillins, AMC, TIC, PIP, TZP, CZO, CTX, CRO, ATM, ETP, CIP, CHL, aminoglycosides, TMP, FOS, polymyxins R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus_species is Elizabethkingia meningoseptica aminopenicillins, AMC, TIC, CZO, CTX, CRO, CAZ, FEP, ATM, ETP, IPM, MEM, polymyxins R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus_species is Ochrobactrum anthropi aminopenicillins, AMC, TIC, PIP, TZP, CZO, CTX, CRO, CAZ, FEP, ATM, ETP R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus_species is Pseudomonas aeruginosa aminopenicillins, AMC, CZO, CTX, CRO, ETP, CHL, KAN, NEO, TMP, SXT, tetracyclines, TGC R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus_species is Stenotrophomonas maltophilia aminopenicillins, AMC, TIC, PIP, TZP, CZO, CTX, CRO, CAZ, ATM, ETP, IPM, MEM, aminoglycosides, TMP, FOS, TCY R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus one_of Haemophilus, Moraxella, Neisseria, Campylobacter glycopeptides, LIN, DAP, LNZ R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
genus_species is Haemophilus influenzae FUS, streptogramins R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
genus_species is Moraxella catarrhalis TMP R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
genus is Neisseria TMP R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
genus_species is Campylobacter fetus FUS, streptogramins, TMP, NAL R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
genus_species is Campylobacter jejuni FUS, streptogramins, TMP R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
genus_species is Campylobacter coli FUS, streptogramins, TMP R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
gramstain is Gram positive ATM, polymyxins, NAL R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus saprophyticus FUS, CAZ, FOS, NOV R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus cohnii CAZ, NOV R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus xylosus CAZ, NOV R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus capitis CAZ, FOS R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus aureus CAZ R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus epidermidis CAZ R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus coagulase-negative CAZ R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus hominis CAZ R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus haemolyticus CAZ R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus intermedius CAZ R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus pseudintermedius CAZ R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus is Streptococcus FUS, CAZ, aminoglycosides R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Enterococcus faecalis FUS, CAZ, cephalosporins_without_CAZ, aminoglycosides, macrolides, CLI, QDA, TMP, SXT R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Enterococcus gallinarum FUS, CAZ, cephalosporins_without_CAZ, aminoglycosides, macrolides, CLI, QDA, VAN, TMP, SXT R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Enterococcus casseliflavus FUS, CAZ, cephalosporins_without_CAZ, aminoglycosides, macrolides, CLI, QDA, VAN, TMP, SXT R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Enterococcus faecium FUS, CAZ, cephalosporins_without_CAZ, aminoglycosides, macrolides, TMP, SXT R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus is Corynebacterium FOS R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Listeria monocytogenes cephalosporins R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus is Leuconostoc, Pediococcus glycopeptides R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus is Lactobacillus glycopeptides R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Clostridium ramosum vanc R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Clostridium innocuum vanc R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G) peni S aminopenicillins, cephalosporins, carbapenems S Table 08: Interpretive rules for B-lactam agents and Gram-positive cocci Expert Rules
genus is Enterococcus ampi R ureidopenicillins, carbapenems R Table 08: Interpretive rules for B-lactam agents and Gram-positive cocci Expert Rules
genus is Enterococcus amox R ureidopenicillins, carbapenems R Table 08: Interpretive rules for B-lactam agents and Gram-positive cocci Expert Rules
family is Enterobacteriaceae tica, pipe R, S pipe R Table 09: Interpretive rules for B-lactam agents and Gram-negative rods Expert Rules
genus is .* eryt S azit, clar S Table 11: Interpretive rules for macrolides, lincosamides, and streptogramins Expert Rules
genus is .* eryt I azit, clar I Table 11: Interpretive rules for macrolides, lincosamides, and streptogramins Expert Rules
genus is .* eryt R azit, clar R Table 11: Interpretive rules for macrolides, lincosamides, and streptogramins Expert Rules
genus is Staphylococcus tobr R kana, amik R Table 12: Interpretive rules for aminoglycosides Expert Rules
genus is Staphylococcus gent R aminoglycosides R Table 12: Interpretive rules for aminoglycosides Expert Rules
family is Enterobacteriaceae gent, tobr I, S gent R Table 12: Interpretive rules for aminoglycosides Expert Rules
family is Enterobacteriaceae gent, tobr R, I tobr R Table 12: Interpretive rules for aminoglycosides Expert Rules
genus is Staphylococcus moxi R fluoroquinolones R Table 13: Interpretive rules for quinolones Expert Rules
genus_species is Streptococcus pneumoniae moxi R fluoroquinolones R Table 13: Interpretive rules for quinolones Expert Rules
family is Enterobacteriaceae cipr R fluoroquinolones R Table 13: Interpretive rules for quinolones Expert Rules
genus_species is Neisseria gonorrhoeae cipr R fluoroquinolones R Table 13: Interpretive rules for quinolones Expert Rules
genus is .* amcl R ampi, amox R Non-EUCAST: ampicillin = R where amoxicillin/clav acid = R Other rules
genus is .* pita R pipe R Non-EUCAST: piperacillin = R where piperacillin/tazobactam = R Other rules
genus is .* trsu R trim R Non-EUCAST: trimethoprim = R where trimethoprim/sulfa = R Other rules
genus is .* ampi S amcl S Non-EUCAST: amoxicillin/clav acid = S where ampicillin = S Other rules
genus is .* amox S amcl S Non-EUCAST: amoxicillin/clav acid = S where ampicillin = S Other rules
genus is .* pipe S pita S Non-EUCAST: piperacillin/tazobactam = S where piperacillin = S Other rules
genus is .* trim S trsu S Non-EUCAST: trimethoprim/sulfa = S where trimethoprim = S Other rules
genus_species is Clostridium ramosum VAN R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Clostridium innocuum VAN R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G) PEN S aminopenicillins, cephalosporins_without_CAZ, carbapenems S Table 08: Interpretive rules for B-lactam agents and Gram-positive cocci Expert Rules
genus is Enterococcus AMP R ureidopenicillins, carbapenems R Table 08: Interpretive rules for B-lactam agents and Gram-positive cocci Expert Rules
genus is Enterococcus AMX R ureidopenicillins, carbapenems R Table 08: Interpretive rules for B-lactam agents and Gram-positive cocci Expert Rules
family is Enterobacteriaceae TIC, PIP R, S PIP R Table 09: Interpretive rules for B-lactam agents and Gram-negative rods Expert Rules
genus is .* ERY S AZM, CLR S Table 11: Interpretive rules for macrolides, lincosamides, and streptogramins Expert Rules
genus is .* ERY I AZM, CLR I Table 11: Interpretive rules for macrolides, lincosamides, and streptogramins Expert Rules
genus is .* ERY R AZM, CLR R Table 11: Interpretive rules for macrolides, lincosamides, and streptogramins Expert Rules
genus is Staphylococcus TOB R KAN, amik R Table 12: Interpretive rules for aminoglycosides Expert Rules
genus is Staphylococcus GEN R aminoglycosides R Table 12: Interpretive rules for aminoglycosides Expert Rules
family is Enterobacteriaceae GEN, TOB I, S GEN R Table 12: Interpretive rules for aminoglycosides Expert Rules
family is Enterobacteriaceae GEN, TOB R, I TOB R Table 12: Interpretive rules for aminoglycosides Expert Rules
genus is Staphylococcus MFX R fluoroquinolones R Table 13: Interpretive rules for quinolones Expert Rules
genus_species is Streptococcus pneumoniae MFX R fluoroquinolones R Table 13: Interpretive rules for quinolones Expert Rules
family is Enterobacteriaceae CIP R fluoroquinolones R Table 13: Interpretive rules for quinolones Expert Rules
genus_species is Neisseria gonorrhoeae CIP R fluoroquinolones R Table 13: Interpretive rules for quinolones Expert Rules
genus is .* AMC R AMP, AMX R Non-EUCAST: ampicillin = R where amoxicillin/clav acid = R Other rules
genus is .* TZP R PIP R Non-EUCAST: piperacillin = R where piperacillin/tazobactam = R Other rules
genus is .* SXT R TMP R Non-EUCAST: trimethoprim = R where trimethoprim/sulfa = R Other rules
genus is .* AMP S AMC S Non-EUCAST: amoxicillin/clav acid = S where ampicillin = S Other rules
genus is .* AMX S AMC S Non-EUCAST: amoxicillin/clav acid = S where ampicillin = S Other rules
genus is .* PIP S TZP S Non-EUCAST: piperacillin/tazobactam = S where piperacillin = S Other rules
genus is .* TMP S SXT S Non-EUCAST: trimethoprim/sulfa = S where trimethoprim = S Other rules

1 if_mo_property like_is_one_of this_value and_these_antibiotics have_these_values then_change_these_antibiotics to_value reference.rule reference.rule_group
2 order is Enterobacteriales ampi AMP S amox AMX S Enterobacteriales (Order) Breakpoints
3 order is Enterobacteriales ampi AMP I amox AMX I Enterobacteriales (Order) Breakpoints
4 order is Enterobacteriales ampi AMP R amox AMX R Enterobacteriales (Order) Breakpoints
5 genus is Staphylococcus peni, cfox PEN, FOX S ampi, amox, pipe, tica AMP, AMX, PIP, TIC S Staphylococcus Breakpoints
6 genus is Staphylococcus peni, cfox PEN, FOX R, S oxac, clox OXA, FLC S Staphylococcus Breakpoints
7 genus is Staphylococcus cfox FOX R all_betalactams R Staphylococcus Breakpoints
8 genus_species is Staphylococcus saprophyticus ampi AMP S amox, amcl, pipe, pita AMX, AMC, PIP, TZP S Staphylococcus Breakpoints
9 genus is Staphylococcus cfox FOX S carbapenems, cephalosporins_without_cfta carbapenems, cephalosporins_without_CAZ S Staphylococcus Breakpoints
10 genus is Staphylococcus cfox FOX I carbapenems, cephalosporins_without_cfta carbapenems, cephalosporins_without_CAZ I Staphylococcus Breakpoints
11 genus is Staphylococcus cfox FOX R carbapenems, cephalosporins_without_cfta carbapenems, cephalosporins_without_CAZ R Staphylococcus Breakpoints
12 genus is Staphylococcus norf NOR S cipr, levo, moxi, oflo CIP, LVX, MFX, OFX S Staphylococcus Breakpoints
13 genus is Staphylococcus eryt ERY S azit, clar, roxi AZM, CLR, RXT S Staphylococcus Breakpoints
14 genus is Staphylococcus eryt ERY I azit, clar, roxi AZM, CLR, RXT I Staphylococcus Breakpoints
15 genus is Staphylococcus eryt ERY R azit, clar, roxi AZM, CLR, RXT R Staphylococcus Breakpoints
16 genus is Staphylococcus tetr TCY S doxy, mino DOX, MNO S Staphylococcus Breakpoints
17 genus_species is Enterococcus faecium ampi AMP R all_betalactams R Enterococcus Breakpoints
18 genus is Enterococcus ampi AMP S amox, amcl, pipe, pita AMX, AMC, PIP, TZP S Enterococcus Breakpoints
19 genus is Enterococcus ampi AMP I amox, amcl, pipe, pita AMX, AMC, PIP, TZP I Enterococcus Breakpoints
20 genus is Enterococcus ampi AMP R amox, amcl, pipe, pita AMX, AMC, PIP, TZP R Enterococcus Breakpoints
21 genus is Enterococcus norf NOR S cipr, levo CIP, LVX S Enterococcus Breakpoints
22 genus is Enterococcus norf NOR I cipr, levo CIP, LVX I Enterococcus Breakpoints
23 genus is Enterococcus norf NOR R cipr, levo CIP, LVX R Enterococcus Breakpoints
24 genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ peni PEN S aminopenicillins, ureidopenicillins, cephalosporins, carbapenems, clox, amcl aminopenicillins, ureidopenicillins, cephalosporins_without_CAZ, carbapenems, FLC, AMC S Streptococcus groups A, B, C, G Breakpoints
25 genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ peni PEN I aminopenicillins, ureidopenicillins, cephalosporins, carbapenems, clox, amcl aminopenicillins, ureidopenicillins, cephalosporins_without_CAZ, carbapenems, FLC, AMC I Streptococcus groups A, B, C, G Breakpoints
26 genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ peni PEN R aminopenicillins, ureidopenicillins, cephalosporins, carbapenems, clox, amcl aminopenicillins, ureidopenicillins, cephalosporins_without_CAZ, carbapenems, FLC, AMC R Streptococcus groups A, B, C, G Breakpoints
27 genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ norf NOR S levo, moxi LVX, MFX S Streptococcus groups A, B, C, G Breakpoints
28 genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ eryt ERY S azit, clar, roxi AZM, CLR, RXT S Streptococcus groups A, B, C, G Breakpoints
29 genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ eryt ERY I azit, clar, roxi AZM, CLR, RXT I Streptococcus groups A, B, C, G Breakpoints
30 genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ eryt ERY R azit, clar, roxi AZM, CLR, RXT R Streptococcus groups A, B, C, G Breakpoints
31 genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ tetr TCY S doxy, mino DOX, MNO S Streptococcus groups A, B, C, G Breakpoints
32 genus_species is Streptococcus pneumoniae peni PEN S ampi, amox, amcl, pipe, pita AMP, AMX, AMC, PIP, TZP S Streptococcus pneumoniae Breakpoints
33 genus_species is Streptococcus pneumoniae ampi AMP S amox, amcl, pipe, pita AMX, AMC, PIP, TZP S Streptococcus pneumoniae Breakpoints
34 genus_species is Streptococcus pneumoniae ampi AMP I amox, amcl, pipe, pita AMX, AMC, PIP, TZP I Streptococcus pneumoniae Breakpoints
35 genus_species is Streptococcus pneumoniae ampi AMP R amox, amcl, pipe, pita AMX, AMC, PIP, TZP R Streptococcus pneumoniae Breakpoints
36 genus_species is Streptococcus pneumoniae norf NOR S levo, moxi LVX, MFX S Streptococcus pneumoniae Breakpoints
37 genus_species is Streptococcus pneumoniae eryt ERY S azit, clar, roxi AZM, CLR, RXT S Streptococcus pneumoniae Breakpoints
38 genus_species is Streptococcus pneumoniae eryt ERY I azit, clar, roxi AZM, CLR, RXT I Streptococcus pneumoniae Breakpoints
39 genus_species is Streptococcus pneumoniae eryt ERY R azit, clar, roxi AZM, CLR, RXT R Streptococcus pneumoniae Breakpoints
40 genus_species is Streptococcus pneumoniae tetr TCY S doxy, mino DOX, MNO S Streptococcus pneumoniae Breakpoints
41 genus_species like ^Streptococcus (australis|bovis|constellatus|cristatus|gallolyticus|gordonii|infantarius|infantis|mitis|mutans|oligofermentans|oralis|peroris|pseudopneumoniae|salivarius|sinensis|sobrinus|thermophilus|vestibularis|anginosus|equinus|intermedius|parasanguinis|sanguinis)$ peni PEN S ampi, amox, amcl, pipe, pita AMP, AMX, AMC, PIP, TZP S Viridans group streptococci Breakpoints
42 genus_species like ^Streptococcus (australis|bovis|constellatus|cristatus|gallolyticus|gordonii|infantarius|infantis|mitis|mutans|oligofermentans|oralis|peroris|pseudopneumoniae|salivarius|sinensis|sobrinus|thermophilus|vestibularis|anginosus|equinus|intermedius|parasanguinis|sanguinis)$ ampi AMP S amox, amcl, pipe, pita AMX, AMC, PIP, TZP S Viridans group streptococci Breakpoints
43 genus_species like ^Streptococcus (australis|bovis|constellatus|cristatus|gallolyticus|gordonii|infantarius|infantis|mitis|mutans|oligofermentans|oralis|peroris|pseudopneumoniae|salivarius|sinensis|sobrinus|thermophilus|vestibularis|anginosus|equinus|intermedius|parasanguinis|sanguinis)$ ampi AMP I amox, amcl, pipe, pita AMX, AMC, PIP, TZP I Viridans group streptococci Breakpoints
44 genus_species like ^Streptococcus (australis|bovis|constellatus|cristatus|gallolyticus|gordonii|infantarius|infantis|mitis|mutans|oligofermentans|oralis|peroris|pseudopneumoniae|salivarius|sinensis|sobrinus|thermophilus|vestibularis|anginosus|equinus|intermedius|parasanguinis|sanguinis)$ ampi AMP R amox, amcl, pipe, pita AMX, AMC, PIP, TZP R Viridans group streptococci Breakpoints
45 genus_species is Haemophilus influenzae ampi AMP S amox, pipe AMX, PIP S Haemophilus influenzae Breakpoints
46 genus_species is ^Haemophilus influenzae ampi AMP I amox, pipe AMX, PIP I Haemophilus influenzae Breakpoints
47 genus_species is Haemophilus influenzae ampi AMP R amox, pipe AMX, PIP R Haemophilus influenzae Breakpoints
48 genus_species is Haemophilus influenzae peni PEN S ampi, amox, amcl, pipe, pita AMP, AMX, AMC, PIP, TZP S Haemophilus influenzae Breakpoints
49 genus_species is Haemophilus influenzae amcl AMC S pita TZP S Haemophilus influenzae Breakpoints
50 genus_species is Haemophilus influenzae amcl AMC I pita TZP I Haemophilus influenzae Breakpoints
51 genus_species is Haemophilus influenzae amcl AMC R pita TZP R Haemophilus influenzae Breakpoints
52 genus_species is Haemophilus influenzae nali NAL S cipr, levo, moxi, oflo CIP, LVX, MFX, OFX S Haemophilus influenzae Breakpoints
53 genus_species is Haemophilus influenzae tetr TCY S doxy, mino DOX, MNO S Haemophilus influenzae Breakpoints
54 genus_species is Moraxella catarrhalis amcl AMC S pita TZP S Moraxella catarrhalis Breakpoints
55 genus_species is Moraxella catarrhalis amcl AMC I pita TZP I Moraxella catarrhalis Breakpoints
56 genus_species is Moraxella catarrhalis amcl AMC R pita TZP R Moraxella catarrhalis Breakpoints
57 genus_species is Moraxella catarrhalis nali NAL S cipr, levo, moxi, oflo CIP, LVX, MFX, OFX S Moraxella catarrhalis Breakpoints
58 genus_species is Moraxella catarrhalis eryt ERY S azit, clar, roxi AZM, CLR, RXT S Moraxella catarrhalis Breakpoints
59 genus_species is Moraxella catarrhalis eryt ERY I azit, clar, roxi AZM, CLR, RXT I Moraxella catarrhalis Breakpoints
60 genus_species is Moraxella catarrhalis eryt ERY R azit, clar, roxi AZM, CLR, RXT R Moraxella catarrhalis Breakpoints
61 genus_species is Moraxella catarrhalis tetr TCY S doxy, mino DOX, MNO S Moraxella catarrhalis Breakpoints
62 genus one_of Actinomyces, Bifidobacterium, Clostridium, Cutibacterium, Eggerthella, Eubacterium, Lactobacillus , Propionibacterium Actinomyces, Bifidobacterium, Clostridium, Cutibacterium, Eggerthella, Eubacterium, Lactobacillus, Propionibacterium peni PEN S ampi, amox, pipe, pita, tica AMP, AMX, PIP, TZP, TIC S Anaerobic Gram positives Breakpoints
63 genus one_of Actinomyces, Bifidobacterium, Clostridium, Cutibacterium, Eggerthella, Eubacterium, Lactobacillus , Propionibacterium Actinomyces, Bifidobacterium, Clostridium, Cutibacterium, Eggerthella, Eubacterium, Lactobacillus, Propionibacterium peni PEN I ampi, amox, pipe, pita, tica AMP, AMX, PIP, TZP, TIC I Anaerobic Gram positives Breakpoints
64 genus one_of Actinomyces, Bifidobacterium, Clostridium, Cutibacterium, Eggerthella, Eubacterium, Lactobacillus , Propionibacterium Actinomyces, Bifidobacterium, Clostridium, Cutibacterium, Eggerthella, Eubacterium, Lactobacillus, Propionibacterium peni PEN R ampi, amox, pipe, pita, tica AMP, AMX, PIP, TZP, TIC R Anaerobic Gram positives Breakpoints
65 genus one_of Bacteroides, Bilophila , Fusobacterium, Mobiluncus, Porphyromonas, Prevotella peni PEN S ampi, amox, pipe, pita, tica AMP, AMX, PIP, TZP, TIC S Anaerobic Gram negatives Breakpoints
66 genus one_of Bacteroides, Bilophila , Fusobacterium, Mobiluncus, Porphyromonas, Prevotella peni PEN I ampi, amox, pipe, pita, tica AMP, AMX, PIP, TZP, TIC I Anaerobic Gram negatives Breakpoints
67 genus one_of Bacteroides, Bilophila , Fusobacterium, Mobiluncus, Porphyromonas, Prevotella peni PEN R ampi, amox, pipe, pita, tica AMP, AMX, PIP, TZP, TIC R Anaerobic Gram negatives Breakpoints
68 genus_species is Pasteurella multocida peni PEN S ampi, amox AMP, AMX S Pasteurella multocida Breakpoints
69 genus_species is Pasteurella multocida peni PEN I ampi, amox AMP, AMX I Pasteurella multocida Breakpoints
70 genus_species is Pasteurella multocida peni PEN R ampi, amox AMP, AMX R Pasteurella multocida Breakpoints
71 genus_species is Campylobacter coli eryt ERY S azit, clar AZM, CLR S Campylobacter coli Breakpoints
72 genus_species is Campylobacter coli eryt ERY I azit, clar AZM, CLR I Campylobacter coli Breakpoints
73 genus_species is Campylobacter coli eryt ERY R azit, clar AZM, CLR R Campylobacter coli Breakpoints
74 genus_species is Campylobacter coli tetr TCY S doxy DOX S Campylobacter coli Breakpoints
75 genus_species is Campylobacter coli tetr TCY I doxy DOX I Campylobacter coli Breakpoints
76 genus_species is Campylobacter coli tetr TCY R doxy DOX R Campylobacter coli Breakpoints
77 genus_species is Campylobacter jejuni eryt ERY S azit, clar AZM, CLR S Campylobacter jejuni Breakpoints
78 genus_species is Campylobacter jejuni eryt ERY I azit, clar AZM, CLR I Campylobacter jejuni Breakpoints
79 genus_species is Campylobacter jejuni eryt ERY R azit, clar AZM, CLR R Campylobacter jejuni Breakpoints
80 genus_species is Campylobacter jejuni tetr TCY S doxy DOX S Campylobacter jejuni Breakpoints
81 genus_species is Campylobacter jejuni tetr TCY I doxy DOX I Campylobacter jejuni Breakpoints
82 genus_species is Campylobacter jejuni tetr TCY R doxy DOX R Campylobacter jejuni Breakpoints
83 genus_species is Aerococcus sanguinicola norf NOR S fluoroquinolones S Aerococcus sanguinicola Breakpoints
84 genus_species is Aerococcus sanguinicola norf NOR I fluoroquinolones I Aerococcus sanguinicola Breakpoints
85 genus_species is Aerococcus sanguinicola norf NOR R fluoroquinolones R Aerococcus sanguinicola Breakpoints
86 genus_species is Aerococcus sanguinicola cipr CIP S levo LVX S Aerococcus sanguinicola Breakpoints
87 genus_species is Aerococcus sanguinicola cipr CIP I levo LVX I Aerococcus sanguinicola Breakpoints
88 genus_species is Aerococcus sanguinicola cipr CIP R levo LVX R Aerococcus urinae Breakpoints
89 genus_species is Aerococcus urinae norf NOR S fluoroquinolones S Aerococcus urinae Breakpoints
90 genus_species is Aerococcus urinae norf NOR I fluoroquinolones I Aerococcus urinae Breakpoints
91 genus_species is Aerococcus urinae norf NOR R fluoroquinolones R Aerococcus urinae Breakpoints
92 genus_species is Aerococcus urinae cipr CIP S levo LVX S Aerococcus urinae Breakpoints
93 genus_species is Aerococcus urinae cipr CIP I levo LVX I Aerococcus urinae Breakpoints
94 genus_species is Aerococcus urinae cipr CIP R levo LVX R Aerococcus urinae Breakpoints
95 genus_species is Kingella kingae peni PEN S ampi, amox AMP, AMX S Kingella kingae Breakpoints
96 genus_species is Kingella kingae peni PEN I ampi, amox AMP, AMX I Kingella kingae Breakpoints
97 genus_species is Kingella kingae peni PEN R ampi, amox AMP, AMX R Kingella kingae Breakpoints
98 genus_species is Kingella kingae eryt ERY S azit, clar AZM, CLR S Kingella kingae Breakpoints
99 genus_species is Kingella kingae eryt ERY I azit, clar AZM, CLR I Kingella kingae Breakpoints
100 genus_species is Kingella kingae eryt ERY R azit, clar AZM, CLR R Kingella kingae Breakpoints
101 genus_species is Kingella kingae tetr TCY S doxy DOX S Kingella kingae Breakpoints
102 family is Enterobacteriaceae peni, glycopeptides, fusi, macrolides, linc, streptogramins, rifa, dapt, line PEN, glycopeptides, FUS, macrolides, LIN, streptogramins, RIF, DAP, LNZ R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
103 fullname like ^Citrobacter (koseri|amalonaticus|sedlakii|farmeri|rodentium) aminopenicillins, tica aminopenicillins, TIC R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
104 fullname like ^Citrobacter (freundii|braakii|murliniae|werkmanii|youngae) aminopenicillins, amcl, czol, cfox aminopenicillins, AMC, CZO, FOX R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
105 genus_species is Enterobacter cloacae aminopenicillins, amcl, czol, cfox aminopenicillins, AMC, CZO, FOX R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
106 genus_species is Enterobacter aerogenes aminopenicillins, amcl, czol, cfox aminopenicillins, AMC, CZO, FOX R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
107 genus_species is Escherichia hermanni aminopenicillins, tica aminopenicillins, TIC R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
108 genus_species is Hafnia alvei aminopenicillins, amcl, czol, cfox aminopenicillins, AMC, CZO, FOX R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
109 genus is Klebsiella aminopenicillins, tica aminopenicillins, TIC R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
110 genus_species is Morganella morganii aminopenicillins, amcl, czol, tetracyclines, polymyxins, nitr aminopenicillins, AMC, CZO, tetracyclines, polymyxins, NIT R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
111 genus_species is Proteus mirabilis tetracyclines, tige, polymyxins, nitr tetracyclines, TGC, polymyxins, NIT R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
112 genus_species is Proteus penneri aminopenicillins, czol, cfur, tetracyclines, tige, polymyxins, nitr aminopenicillins, CZO, CXM, tetracyclines, TGC, polymyxins, NIT R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
113 genus_species is Proteus vulgaris aminopenicillins, czol, cfur, tetracyclines, tige, polymyxins, nitr aminopenicillins, CZO, CXM, tetracyclines, TGC, polymyxins, NIT R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
114 genus_species is Providencia rettgeri aminopenicillins, amcl, czol, cfur, tetracyclines, tige, polymyxins, nitr aminopenicillins, AMC, CZO, CXM, tetracyclines, TGC, polymyxins, NIT R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
115 genus_species is Providencia stuartii aminopenicillins, amcl, czol, cfur, tetracyclines, tige, polymyxins, nitr aminopenicillins, AMC, CZO, CXM, tetracyclines, TGC, polymyxins, NIT R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
116 genus is Raoultella aminopenicillins, tica aminopenicillins, TIC R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
117 genus_species is Serratia marcescens aminopenicillins, amcl, czol, cfox, cfur, tetracyclines[tetracyclines != na.rm(mino)], polymyxins, nitr aminopenicillins, AMC, CZO, FOX, CXM, DOX, TCY, polymyxins, NIT R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
118 genus_species is Yersinia enterocolitica aminopenicillins, amcl, tica, czol, cfox aminopenicillins, AMC, TIC, CZO, FOX R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
119 genus_species is Yersinia pseudotuberculosis poly, coli poly, COL R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
120 genus one_of Achromobacter, Acinetobacter, Alcaligenes, Bordatella, Burkholderia, Elizabethkingia, Flavobacterium, Ochrobactrum, Pseudomonas, Stenotrophomonas peni, cfox, cfur, glycopeptides, fusi, macrolides, linc, streptogramins, rifa, dapt, line PEN, FOX, CXM, glycopeptides, FUS, macrolides, LIN, streptogramins, RIF, DAP, LNZ R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
121 genus_species is Acinetobacter baumannii aminopenicillins, amcl, czol, cfot, cftr, aztr, erta, trim, fosf, doxy, tetr aminopenicillins, AMC, CZO, CTX, CRO, ATM, ETP, TMP, FOS, DOX, TCY R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
122 genus_species is Acinetobacter pittii aminopenicillins, amcl, czol, cfot, cftr, aztr, erta, trim, fosf, doxy, tetr aminopenicillins, AMC, CZO, CTX, CRO, ATM, ETP, TMP, FOS, DOX, TCY R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
123 genus_species is Acinetobacter nosocomialis aminopenicillins, amcl, czol, cfot, cftr, aztr, erta, trim, fosf, doxy, tetr aminopenicillins, AMC, CZO, CTX, CRO, ATM, ETP, TMP, FOS, DOX, TCY R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
124 genus_species is Acinetobacter calcoaceticus aminopenicillins, amcl, czol, cfot, cftr, aztr, erta, trim, fosf, doxy, tetr aminopenicillins, AMC, CZO, CTX, CRO, ATM, ETP, TMP, FOS, DOX, TCY R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
125 genus_species is Achromobacter xylosoxidans aminopenicillins, czol, cfot, cftr, erta aminopenicillins, CZO, CTX, CRO, ETP R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
126 fullname like ^Burkholderia (cepacia|multivorans|cenocepacia|stabilis|vietnamiensis|dolosa|ambifaria|anthina|pyrrocinia|ubonensis) aminopenicillins, amcl, tica, pipe, pita, czol, cfot, cftr, aztr, erta, cipr, chlo, aminoglycosides, trim, fosf, polymyxins aminopenicillins, AMC, TIC, PIP, TZP, CZO, CTX, CRO, ATM, ETP, CIP, CHL, aminoglycosides, TMP, FOS, polymyxins R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
127 genus_species is Elizabethkingia meningoseptica aminopenicillins, amcl, tica, czol, cfot, cftr, cfta, cfep, aztr, erta, imip, mero, polymyxins aminopenicillins, AMC, TIC, CZO, CTX, CRO, CAZ, FEP, ATM, ETP, IPM, MEM, polymyxins R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
128 genus_species is Ochrobactrum anthropi aminopenicillins, amcl, tica, pipe, pita, czol, cfot, cftr, cfta, cfep, aztr, erta aminopenicillins, AMC, TIC, PIP, TZP, CZO, CTX, CRO, CAZ, FEP, ATM, ETP R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
129 genus_species is Pseudomonas aeruginosa aminopenicillins, amcl, czol, cfot, cftr, erta, chlo, kana, neom, trim, trsu, tetracyclines, tige aminopenicillins, AMC, CZO, CTX, CRO, ETP, CHL, KAN, NEO, TMP, SXT, tetracyclines, TGC R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
130 genus_species is Stenotrophomonas maltophilia aminopenicillins, amcl, tica, pipe, pita, czol, cfot, cftr, cfta, aztr, erta, imip, mero, aminoglycosides, trim, fosf, tetr aminopenicillins, AMC, TIC, PIP, TZP, CZO, CTX, CRO, CAZ, ATM, ETP, IPM, MEM, aminoglycosides, TMP, FOS, TCY R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
131 genus one_of Haemophilus, Moraxella, Neisseria, Campylobacter glycopeptides, linc, dapt, line glycopeptides, LIN, DAP, LNZ R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
132 genus_species is Haemophilus influenzae fusi, streptogramins FUS, streptogramins R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
133 genus_species is Moraxella catarrhalis trim TMP R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
134 genus is Neisseria trim TMP R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
135 genus_species is Campylobacter fetus fusi, streptogramins, trim, nali FUS, streptogramins, TMP, NAL R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
136 genus_species is Campylobacter jejuni fusi, streptogramins, trim FUS, streptogramins, TMP R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
137 genus_species is Campylobacter coli fusi, streptogramins, trim FUS, streptogramins, TMP R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
138 gramstain is Gram positive aztr, polymyxins, nali ATM, polymyxins, NAL R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
139 genus_species is Staphylococcus saprophyticus fusi, cfta, fosf, novo FUS, CAZ, FOS, NOV R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
140 genus_species is Staphylococcus cohnii cfta, novo CAZ, NOV R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
141 genus_species is Staphylococcus xylosus cfta, novo CAZ, NOV R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
142 genus_species is Staphylococcus capitis cfta, fosf CAZ, FOS R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
143 genus_species is Staphylococcus aureus cfta CAZ R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
144 genus_species is Staphylococcus epidermidis cfta CAZ R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
145 genus_species is Staphylococcus coagulase-negative cfta CAZ R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
146 genus_species is Staphylococcus hominis cfta CAZ R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
147 genus_species is Staphylococcus haemolyticus cfta CAZ R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
148 genus_species is Staphylococcus intermedius cfta CAZ R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
149 genus_species is Staphylococcus pseudintermedius cfta CAZ R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
150 genus is Streptococcus fusi, cfta, aminoglycosides FUS, CAZ, aminoglycosides R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
151 genus_species is Enterococcus faecalis fusi, cfta, cephalosporins_without_cfta, aminoglycosides, macrolides, clin, qida, trim, trsu FUS, CAZ, cephalosporins_without_CAZ, aminoglycosides, macrolides, CLI, QDA, TMP, SXT R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
152 genus_species is Enterococcus gallinarum fusi, cfta, cephalosporins_without_cfta, aminoglycosides, macrolides, clin, qida, vanc, trim, trsu FUS, CAZ, cephalosporins_without_CAZ, aminoglycosides, macrolides, CLI, QDA, VAN, TMP, SXT R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
153 genus_species is Enterococcus casseliflavus fusi, cfta, cephalosporins_without_cfta, aminoglycosides, macrolides, clin, qida, vanc, trim, trsu FUS, CAZ, cephalosporins_without_CAZ, aminoglycosides, macrolides, CLI, QDA, VAN, TMP, SXT R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
154 genus_species is Enterococcus faecium fusi, cfta, cephalosporins_without_cfta, aminoglycosides, macrolides, trim, trsu FUS, CAZ, cephalosporins_without_CAZ, aminoglycosides, macrolides, TMP, SXT R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
155 genus is Corynebacterium fosf FOS R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
156 genus_species is Listeria monocytogenes cephalosporins R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
157 genus is Leuconostoc, Pediococcus glycopeptides R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
158 genus is Lactobacillus glycopeptides R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
159 genus_species is Clostridium ramosum vanc VAN R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
160 genus_species is Clostridium innocuum vanc VAN R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
161 genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G) peni PEN S aminopenicillins, cephalosporins, carbapenems aminopenicillins, cephalosporins_without_CAZ, carbapenems S Table 08: Interpretive rules for B-lactam agents and Gram-positive cocci Expert Rules
162 genus is Enterococcus ampi AMP R ureidopenicillins, carbapenems R Table 08: Interpretive rules for B-lactam agents and Gram-positive cocci Expert Rules
163 genus is Enterococcus amox AMX R ureidopenicillins, carbapenems R Table 08: Interpretive rules for B-lactam agents and Gram-positive cocci Expert Rules
164 family is Enterobacteriaceae tica, pipe TIC, PIP R, S pipe PIP R Table 09: Interpretive rules for B-lactam agents and Gram-negative rods Expert Rules
165 genus is .* eryt ERY S azit, clar AZM, CLR S Table 11: Interpretive rules for macrolides, lincosamides, and streptogramins Expert Rules
166 genus is .* eryt ERY I azit, clar AZM, CLR I Table 11: Interpretive rules for macrolides, lincosamides, and streptogramins Expert Rules
167 genus is .* eryt ERY R azit, clar AZM, CLR R Table 11: Interpretive rules for macrolides, lincosamides, and streptogramins Expert Rules
168 genus is Staphylococcus tobr TOB R kana, amik KAN, amik R Table 12: Interpretive rules for aminoglycosides Expert Rules
169 genus is Staphylococcus gent GEN R aminoglycosides R Table 12: Interpretive rules for aminoglycosides Expert Rules
170 family is Enterobacteriaceae gent, tobr GEN, TOB I, S gent GEN R Table 12: Interpretive rules for aminoglycosides Expert Rules
171 family is Enterobacteriaceae gent, tobr GEN, TOB R, I tobr TOB R Table 12: Interpretive rules for aminoglycosides Expert Rules
172 genus is Staphylococcus moxi MFX R fluoroquinolones R Table 13: Interpretive rules for quinolones Expert Rules
173 genus_species is Streptococcus pneumoniae moxi MFX R fluoroquinolones R Table 13: Interpretive rules for quinolones Expert Rules
174 family is Enterobacteriaceae cipr CIP R fluoroquinolones R Table 13: Interpretive rules for quinolones Expert Rules
175 genus_species is Neisseria gonorrhoeae cipr CIP R fluoroquinolones R Table 13: Interpretive rules for quinolones Expert Rules
176 genus is .* amcl AMC R ampi, amox AMP, AMX R Non-EUCAST: ampicillin = R where amoxicillin/clav acid = R Other rules
177 genus is .* pita TZP R pipe PIP R Non-EUCAST: piperacillin = R where piperacillin/tazobactam = R Other rules
178 genus is .* trsu SXT R trim TMP R Non-EUCAST: trimethoprim = R where trimethoprim/sulfa = R Other rules
179 genus is .* ampi AMP S amcl AMC S Non-EUCAST: amoxicillin/clav acid = S where ampicillin = S Other rules
180 genus is .* amox AMX S amcl AMC S Non-EUCAST: amoxicillin/clav acid = S where ampicillin = S Other rules
181 genus is .* pipe PIP S pita TZP S Non-EUCAST: piperacillin/tazobactam = S where piperacillin = S Other rules
182 genus is .* trim TMP S trsu SXT S Non-EUCAST: trimethoprim/sulfa = S where trimethoprim = S Other rules

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# ==================================================================== #
# TITLE #
# Antimicrobial Resistance (AMR) Analysis #
# #
# SOURCE #
# https://gitlab.com/msberends/AMR #
# #
# LICENCE #
# (c) 2019 Berends MS (m.s.berends@umcg.nl), Luz CF (c.f.luz@umcg.nl) #
# #
# This R package is free software; you can freely use and distribute #
# it for both personal and commercial purposes under the terms of the #
# GNU General Public License version 2.0 (GNU GPL-2), as published by #
# the Free Software Foundation. #
# #
# This R package was created for academic research and was publicly #
# released in the hope that it will be useful, but it comes WITHOUT #
# ANY WARRANTY OR LIABILITY. #
# Visit our website for more info: https://msberends.gitlab.io/AMR. #
# ==================================================================== #
Name: Insert %in%
Binding: addin_insert_in
Interactive: false

456
inst/translations.tsv Normal file
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lang pattern replacement fixed ignore.case
de Coagulase-negative Staphylococcus Koagulase-negative Staphylococcus FALSE FALSE
de Coagulase-positive Staphylococcus Koagulase-positive Staphylococcus FALSE FALSE
de Beta-haemolytic Streptococcus Beta-hämolytischer Streptococcus FALSE FALSE
de unknown Gram negatives unbekannte Gramnegativen FALSE FALSE
de unknown Gram positives unbekannte Grampositiven FALSE FALSE
de unknown name unbekannte Name FALSE FALSE
de unknown kingdom unbekanntes Reich FALSE FALSE
de unknown phylum unbekannter Stamm FALSE FALSE
de unknown class unbekannte Klasse FALSE FALSE
de unknown order unbekannte Ordnung FALSE FALSE
de unknown family unbekannte Familie FALSE FALSE
de unknown genus unbekannte Gattung FALSE FALSE
de unknown species unbekannte Art FALSE FALSE
de unknown subspecies unbekannte Unterart FALSE FALSE
de unknown rank unbekannter Rang FALSE FALSE
de (CoNS) (KNS) TRUE FALSE
de (CoPS) (KPS) TRUE FALSE
de Gram negative Gramnegativ FALSE FALSE
de Gram positive Grampositiv FALSE FALSE
de Bacteria Bakterien FALSE FALSE
de Fungi Hefen/Pilze FALSE FALSE
de Protozoa Protozoen FALSE FALSE
de biogroup Biogruppe FALSE FALSE
de biotype Biotyp FALSE FALSE
de vegetative vegetativ FALSE FALSE
de ([([ ]*?)group \\1Gruppe FALSE FALSE
de ([([ ]*?)Group \\1Gruppe FALSE FALSE
nl Coagulase-negative Staphylococcus Coagulase-negatieve Staphylococcus FALSE FALSE
nl Coagulase-positive Staphylococcus Coagulase-positieve Staphylococcus FALSE FALSE
nl Beta-haemolytic Streptococcus Beta-hemolytische Streptococcus FALSE FALSE
nl unknown Gram negatives onbekende Gram-negatieven FALSE FALSE
nl unknown Gram positives onbekende Gram-positieven FALSE FALSE
nl unknown name onbekende naam FALSE FALSE
nl unknown kingdom onbekend koninkrijk FALSE FALSE
nl unknown phylum onbekend fylum FALSE FALSE
nl unknown class onbekende klasse FALSE FALSE
nl unknown order onbekende orde FALSE FALSE
nl unknown family onbekende familie FALSE FALSE
nl unknown genus onbekend geslacht FALSE FALSE
nl unknown species onbekende soort FALSE FALSE
nl unknown subspecies onbekende ondersoort FALSE FALSE
nl unknown rank onbekende rang FALSE FALSE
nl (CoNS) (CNS) TRUE FALSE
nl (CoPS) (CPS) TRUE FALSE
nl Gram negative Gram-negatief FALSE FALSE
nl Gram positive Gram-positief FALSE FALSE
nl Bacteria Bacteriën FALSE FALSE
nl Fungi Schimmels/gisten FALSE FALSE
nl Protozoa protozoën FALSE FALSE
nl biogroup biogroep FALSE FALSE
nl vegetative vegetatief FALSE FALSE
nl ([([ ]*?)group \\1groep FALSE FALSE
nl ([([ ]*?)Group \\1Groep FALSE FALSE
es Coagulase-negative Staphylococcus Staphylococcus coagulasa negativo FALSE FALSE
es Coagulase-positive Staphylococcus Staphylococcus coagulasa positivo FALSE FALSE
es Beta-haemolytic Streptococcus Streptococcus Beta-hemolítico FALSE FALSE
es unknown Gram negatives Gram negativos desconocidos FALSE FALSE
es unknown Gram positives Gram positivos desconocidos FALSE FALSE
es unknown name nombre desconocido FALSE FALSE
es unknown kingdom reino desconocido FALSE FALSE
es unknown phylum filo desconocido FALSE FALSE
es unknown class clase desconocida FALSE FALSE
es unknown order orden desconocido FALSE FALSE
es unknown family familia desconocida FALSE FALSE
es unknown genus género desconocido FALSE FALSE
es unknown species especie desconocida FALSE FALSE
es unknown subspecies subespecie desconocida FALSE FALSE
es unknown rank rango desconocido FALSE FALSE
es (CoNS) (SCN) TRUE FALSE
es (CoPS) (SCP) TRUE FALSE
es Gram negative Gram negativo FALSE FALSE
es Gram positive Gram positivo FALSE FALSE
es Bacteria Bacterias FALSE FALSE
es Fungi Hongos FALSE FALSE
es Protozoa Protozoarios FALSE FALSE
es biogroup biogrupo FALSE FALSE
es biotype biotipo FALSE FALSE
es vegetative vegetativo FALSE FALSE
es ([([ ]*?)group \\1grupo FALSE FALSE
es ([([ ]*?)Group \\1Grupo FALSE FALSE
it Coagulase-negative Staphylococcus Staphylococcus negativo coagulasi FALSE FALSE
it Coagulase-positive Staphylococcus Staphylococcus positivo coagulasi FALSE FALSE
it Beta-haemolytic Streptococcus Streptococcus Beta-emolitico FALSE FALSE
it unknown Gram negatives Gram negativi sconosciuti FALSE FALSE
it unknown Gram positives Gram positivi sconosciuti FALSE FALSE
it unknown name nome sconosciuto FALSE FALSE
it unknown kingdom regno sconosciuto FALSE FALSE
it unknown phylum phylum sconosciuto FALSE FALSE
it unknown class classe sconosciuta FALSE FALSE
it unknown order ordine sconosciuto FALSE FALSE
it unknown family famiglia sconosciuta FALSE FALSE
it unknown genus genere sconosciuto FALSE FALSE
it unknown species specie sconosciute FALSE FALSE
it unknown subspecies sottospecie sconosciute FALSE FALSE
it unknown rank grado sconosciuto FALSE FALSE
it Gram negative Gram negativo FALSE FALSE
it Gram positive Gram positivo FALSE FALSE
it Bacteria Batteri FALSE FALSE
it Fungi Fungo FALSE FALSE
it Protozoa Protozoi FALSE FALSE
it biogroup biogruppo FALSE FALSE
it biotype biotipo FALSE FALSE
it vegetative vegetativo FALSE FALSE
it ([([ ]*?)group \\1gruppo FALSE FALSE
it ([([ ]*?)Group \\1Gruppo FALSE FALSE
fr Coagulase-negative Staphylococcus Staphylococcus à coagulase négative FALSE FALSE
fr Coagulase-positive Staphylococcus Staphylococcus à coagulase positif FALSE FALSE
fr Beta-haemolytic Streptococcus Streptococcus Bêta-hémolytique FALSE FALSE
fr unknown Gram negatives Gram négatifs inconnus FALSE FALSE
fr unknown Gram positives Gram positifs inconnus FALSE FALSE
fr unknown name nom inconnu FALSE FALSE
fr unknown kingdom règme inconnu FALSE FALSE
fr unknown phylum embranchement inconnu FALSE FALSE
fr unknown class classe inconnue FALSE FALSE
fr unknown order ordre inconnu FALSE FALSE
fr unknown family famille inconnue FALSE FALSE
fr unknown genus genre inconnu FALSE FALSE
fr unknown species espèce inconnue FALSE FALSE
fr unknown subspecies sous-espèce inconnue FALSE FALSE
fr unknown rank rang inconnu FALSE FALSE
fr Gram negative Gram négatif FALSE FALSE
fr Gram positive Gram positif FALSE FALSE
fr Bacteria Bactéries FALSE FALSE
fr Fungi Champignons FALSE FALSE
fr Protozoa Protozoaires FALSE FALSE
fr biogroup biogroupe FALSE FALSE
fr vegetative végétatif FALSE FALSE
fr ([([ ]*?)group \\1groupe FALSE FALSE
fr ([([ ]*?)Group \\1Groupe FALSE FALSE
pt Coagulase-negative Staphylococcus Staphylococcus coagulase negativo FALSE FALSE
pt Coagulase-positive Staphylococcus Staphylococcus coagulase positivo FALSE FALSE
pt Beta-haemolytic Streptococcus Streptococcus Beta-hemolítico FALSE FALSE
pt unknown Gram negatives Gram negativos desconhecidos FALSE FALSE
pt unknown Gram positives Gram positivos desconhecidos FALSE FALSE
pt unknown name nome desconhecido FALSE FALSE
pt unknown kingdom reino desconhecido FALSE FALSE
pt unknown phylum filo desconhecido FALSE FALSE
pt unknown class classe desconhecida FALSE FALSE
pt unknown order ordem desconhecido FALSE FALSE
pt unknown family família desconhecida FALSE FALSE
pt unknown genus gênero desconhecido FALSE FALSE
pt unknown species espécies desconhecida FALSE FALSE
pt unknown subspecies subespécies desconhecida FALSE FALSE
pt unknown rank classificação desconhecido FALSE FALSE
pt Gram negative Gram negativo FALSE FALSE
pt Gram positive Gram positivo FALSE FALSE
pt Bacteria Bactérias FALSE FALSE
pt Fungi Fungos FALSE FALSE
pt Protozoa Protozoários FALSE FALSE
pt biogroup biogrupo FALSE FALSE
pt biotype biótipo FALSE FALSE
pt vegetative vegetativo FALSE FALSE
pt ([([ ]*?)group \\1grupo FALSE FALSE
pt ([([ ]*?)Group \\1Grupo FALSE FALSE
nl 4-aminosalicylic acid aminosalicylzuur
nl adefovir dipivoxil adefovir
nl aldesulfone sodium aldesulfon
nl amikacin amikacine
nl amoxicillin amoxicilline
nl amoxicillin and beta-lactamase inhibitor amoxicilline met enzymremmer
nl amphotericin B amfotericine B
nl ampicillin ampicilline
nl ampicillin and beta-lactamase inhibitor ampicilline met enzymremmer
nl ampicillin, combinations ampicilline, combinatiepreparaten
nl anidulafungin anidulafungine
nl anthrax antigen anthrax-antigeen
nl anti-d (rh) immunoglobulin rhesus(d)immunoglobuline
nl azidocillin azidocilline
nl azithromycin azitromycine
nl azlocillin azlocilline
nl bacampicillin bacampicilline
nl bacitracin bacitracine
nl benzathine benzylpenicillin benzylpenicillinebenzathine
nl benzathine phenoxymethylpenicillin fenoxymethylpenicillinebenzathine
nl benzylpenicillin benzylpenicilline
nl botulinum antitoxin serum tegen botulisme
nl brucella antigen brucella-antigeen
nl calcium aminosalicylate aminosalicylzuur
nl capreomycin capreomycine
nl carbenicillin carbenicilline
nl carindacillin carindacilline
nl caspofungin caspofungine
nl cefacetrile cefacetril
nl cefalexin cefalexine
nl cefalotin cefalotine
nl cefamandole cefamandol
nl cefapirin cefapirine
nl cefazedone cefazedon
nl cefazolin cefazoline
nl cefepime cefepim
nl cefixime cefixim
nl cefmenoxime cefmenoxim
nl cefmetazole cefmetazol
nl cefodizime cefodizim
nl cefonicid cefonicide
nl cefoperazone cefoperazon
nl cefoperazone and beta-lactamase inhibitor cefoperazon combinatiepreparaten
nl cefotaxime cefotaxim
nl cefoxitin cefoxitine
nl cefpirome cefpirom
nl cefpodoxime cefpodoxim
nl cefsulodin cefsulodine
nl ceftazidime ceftazidim
nl ceftezole ceftezol
nl ceftizoxime ceftizoxim
nl ceftriaxone ceftriaxon
nl ceftriaxone, combinations ceftriaxon, combinatiepreparaten
nl cefuroxime cefuroxim
nl cefuroxime and metronidazole cefuroxim met andere antibacteriele middelen
nl chloramphenicol chlooramfenicol
nl chlortetracycline chloortetracycline
nl cholera, combinations with typhoid vaccine, inactivated, whole cell choleravaccin met tyfusvaccin, geinactiveerd, hele cel
nl cholera, inactivated, whole cell cholera, geinactiveerd, hele cel
nl cholera, live attenuated cholera, levend verzwakt
nl cinoxacin cinoxacine
nl ciprofloxacin ciprofloxacine
nl clarithromycin claritromycine
nl clavulanic acid clavulaanzuur
nl clindamycin clindamycine
nl clometocillin clometocilline
nl clotrimazole clotrimazol
nl cloxacillin cloxacilline
nl colistin colistine
nl combinations combinatiepreparaten
nl combinations combinatiepreparaten
nl combinations combinatiepreparaten
nl combinations combinatiepreparaten
nl combinations combinatiepreparaten
nl combinations combinatiepreparaten
nl combinations combinatiepreparaten
nl combinations of penicillins combinatiepreparaten
nl combinations of tetracyclines tetracycline combinatiepreparaten
nl cytomegalovirus immunoglobulin cytomegalie-immunoglobuline
nl dapsone dapson
nl daptomycin daptomycine
nl dibekacin dibekacine
nl dicloxacillin dicloxacilline
nl diphtheria antitoxin serum tegen difterie
nl diphtheria immunoglobulin difterie-immunoglobuline
nl diphtheria toxoid difterietoxoide
nl diphtheria-hemophilus influenzae b-pertussis-poliomyelitis-tetanus difterie-haemophilus-kinkhoest-poliomyelitis-tetanus
nl diphtheria-hemophilus influenzae b-pertussis-poliomyelitis-tetanus-hepatitis B difterie-haemophilus-kinkhoest-polio-tetanus-hepatitis B
nl diphtheria-hemophilus influenzae b-pertussis-tetanus-hepatitis B difterie-haemophilus-kinkhoest-tetanus-hepatitis B
nl diphtheria-hepatitis b-pertussis-tetanus difterie-hepatitis b-kinkhoest-tetanus
nl diphtheria-hepatitis b-tetanus difterie-hepatitis b-tetanus
nl diphtheria-pertussis-poliomyelitis-tetanus difterie-kinkhoest-poliomyelitis-tetanus
nl diphtheria-pertussis-poliomyelitis-tetanus-hepatitis B difterie-kinkhoest-poliomyelitis-tetanus-hepatitis B
nl diphtheria-poliomyelitis-tetanus difterie-poliomyelitis-tetanus
nl diphtheria-rubella-tetanus difterie-rubella-tetanus
nl dirithromycin diritromycine
nl econazole econazol
nl encephalitis, japanese, inactivated, whole virus japanse-encefalitis, geinactiveerd, intact virus
nl encephalitis, tick borne immunoglobulin teken-encephalitis-immunoglobuline
nl encephalitis, tick borne, inactivated, whole virus tekenencefalitis, geinactiveerd, intact virus
nl enoxacin enoxacine
nl epicillin epicilline
nl erythromycin erytromycine
nl ethambutol and isoniazid ethambutol met isoniazide
nl fleroxacin fleroxacine
nl flucloxacillin flucloxacilline
nl fluconazole fluconazol
nl flucytosine fluorocytosine
nl flurithromycin fluritromycine
nl fosfomycin fosfomycine
nl fusidic acid fusidinezuur
nl gas-gangrene sera serum tegen gasgangreen
nl gatifloxacin gatifloxacine
nl gemifloxacin gemifloxacine
nl gentamicin gentamicine
nl grepafloxacin grepafloxacine
nl hachimycin hachimycine
nl hemophilus influenzae B and hepatitis B haemophilus influenzae b-hepatitis B
nl hemophilus influenzae B and poliomyelitis haemophilus influenzae b-poliomyelitis
nl hemophilus influenzae B, combinations with pertussis and toxoids haemophilus influenzae B met kinkhoest en toxoiden
nl hemophilus influenzae B, combinations with toxoids haemophilus influenzae B met toxoiden
nl hemophilus influenzae B, purified antigen conjugated haemophilus influenzae B, gezuiverd geconjugeerd antigeen
nl hepatitis A immunoglobulin hepatitis a-immunoglobuline
nl hepatitis A, inactivated, whole virus hepatitis A, geinactiveerd, intact virus
nl hepatitis B immunoglobulin hepatitis b-immunoglobuline
nl hepatitis B, purified antigen hepatitis B, gezuiverd antigeen
nl hetacillin hetacilline
nl imipenem and cilastatin imipenem met enzymremmer
nl immunoglobulins, normal human, for extravascular adm, immunoglobuline, normaal, extravasculair
nl immunoglobulins, normal human, for intravascular adm, immunoglobuline, normaal, intravasculair
nl influenza, inactivated, split virus or surface antigen influenza, gezuiverd antigeen
nl influenza, inactivated, whole virus influenza, geinactiveerd, intact virus
nl inosine pranobex inosiplex
nl isepamicin isepamicine
nl isoconazole isoconazol
nl isoniazid isoniazide
nl isoniazid, combinations isoniazide, combinatiepreparaten
nl itraconazole itraconazol
nl josamycin josamycine
nl kanamycin kanamycine
nl ketoconazole ketoconazol
nl levofloxacin levofloxacine
nl lincomycin lincomycine
nl lomefloxacin lomefloxacine
nl lysozyme lysozym
nl mandelic acid amandelzuur
nl measles immunoglobulin mazelenimmunoglobuline
nl measles, combinations with mumps and rubella, live attenuated mazelen met bof en rubella, levend verzwakt
nl measles, combinations with mumps, live attenuated mazelen met bof, levend verzwakt
nl measles, combinations with mumps, rubella and varicella, live attenuated mazelen met bof, rubella en varicella, levend verzwakt
nl measles, combinations with rubella, live attenuated mazelen met rubella, levend verzwakt
nl measles, live attenuated mazelen, levend verzwakt
nl meningococcus A, purified polysaccharides antigen meningokok A, gezuiverd polysaccharidenantigeen
nl meningococcus A,c, bivalent purified polysaccharides antigen meningokok, 2 typen, gezuiverd polysaccharidenantigeen
nl meningococcus A,c,y,w-135, tetravalent purified polysaccharides antigen meningokok, 4 typen, gezuiverd polysaccharidenantigeen
nl meningococcus B, outer membrane vesicle vaccine meningokok B, buitenmembraanvaccin
nl meningococcus C, purified polysaccharides antigen conjugated meningokok C, gezuiverd saccharidenantigeen geconjugeerd
nl metampicillin metampicilline
nl meticillin meticilline
nl metisazone metisazon
nl metronidazole metronidazol
nl mezlocillin mezlocilline
nl micafungin micafungine
nl miconazole miconazol
nl midecamycin midecamycine
nl miocamycin miocamycine
nl moxifloxacin moxifloxacine
nl mumps immunoglobulin bofimmunoglobuline
nl mumps, live attenuated bof, levend verzwakt
nl mupirocin mupirocine
nl nalidixic acid nalidixinezuur
nl neomycin neomycine
nl netilmicin netilmicine
nl nitrofurantoin nitrofurantoine
nl norfloxacin norfloxacine
nl novobiocin novobiocine
nl nystatin nystatine
nl ofloxacin ofloxacine
nl oleandomycin oleandomycine
nl ornidazole ornidazol
nl other meningococcal monovalent purified polysaccharides antigen meningokok, 1 type, gezuiverd polysaccaridenantigeen
nl other meningococcal polyvalent purified polysaccharides antigen meningokok, meer typen, gezuiverd polysaccharidenantigeen
nl oxacillin oxacilline
nl oxolinic acid oxolinezuur
nl oxytetracycline, combinations oxytetracycline, combinatiepreparaten
nl pazufloxacin pazufloxacine
nl pefloxacin pefloxacine
nl penamecillin penamecilline
nl penicillins, combinations with other antibacterials penicillines met andere antibacteriele middelen
nl pertussis immunoglobulin kinkhoestimmunoglobuline
nl pertussis, inactivated, whole cell pertussis, geinactiveerd, hele cel
nl pertussis, inactivated, whole cell, combinations with toxoids pertussis, geinactiveerd hele cel, met toxoiden
nl pertussis, purified antigen pertussis, gezuiverd antigeen
nl pertussis, purified antigen, combinations with toxoids pertussis, gezuiverd antigeen, met toxoiden
nl pheneticillin feneticilline
nl phenoxymethylpenicillin fenoxymethylpenicilline
nl pipemidic acid pipemidinezuur
nl piperacillin piperacilline
nl piperacillin and beta-lactamase inhibitor piperacilline met enzymremmer
nl piromidic acid piromidinezuur
nl pivampicillin pivampicilline
nl plague, inactivated, whole cell yersinia pestis, geinactiveerd, hele cel
nl pneumococcus, purified polysaccharides antigen pneumokok, gezuiverd polysaccharidenantigeen
nl pneumococcus, purified polysaccharides antigen conjugated pneumokok, gezuiverd geconjugeerd polysaccharidenantigeen
nl poliomyelitis oral, monovalent, live attenuated poliomyelitis, oraal, 1 type, levend verzwakt
nl poliomyelitis oral, trivalent, live attenuated poliomyelitis, oraal, 3 typen, levend verzwakt
nl poliomyelitis, trivalent, inactivated, whole virus poliomyelitis, 3 typen, geinactiveerd, intact virus
nl polymyxin B polymyxine B
nl posaconazole posaconazol
nl pristinamycin pristinamycine
nl procaine benzylpenicillin benzylpenicillineprocaine
nl propicillin propicilline
nl prulifloxacin prulifloxacine
nl quinupristin/dalfopristin quinupristine/dalfopristine
nl rabies immunoglobulin rabiesimmunoglobuline
nl rabies serum serum tegen rabies
nl rabies, inactivated, whole virus rabies, geinactiveerd, intact virus
nl ribostamycin ribostamycine
nl rifabutin rifabutine
nl rifampicin rifampicine
nl rifampicin and isoniazid rifampicine met isoniazide
nl rifampicin, pyrazinamide and isoniazid rifampicine met pyrazinamide en isoniazide
nl rifampicin, pyrazinamide, ethambutol and isoniazid rifampicine met pyrazinamide, ethambutol en isoniazide
nl rifamycin rifamycine
nl rifaximin rifaximine
nl rokitamycin rokitamycine
nl rosoxacin rosoxacine
nl rota virus, live attenuated rotavirus, levend verzwakt
nl roxithromycin roxitromycine
nl rubella immunoglobulin rubella-immunoglobuline
nl rubella, combinations with mumps, live attenuated rubella met bof, levend verzwakt
nl rubella, live attenuated rubella, levend verzwakt
nl rufloxacin rufloxacine
nl sisomicin sisomicine
nl snake venom antiserum serum tegen slangebeet
nl sodium aminosalicylate aminosalicylzuur,4- (na-zout)
nl sparfloxacin sparfloxacine
nl spectinomycin spectinomycine
nl spiramycin spiramycine
nl spiramycin and metronidazole spiramycine met andere antibacteriele middelen
nl staphylococcus immunoglobulin stafylokokkenimmunoglobuline
nl streptoduocin streptoduocine
nl streptomycin streptomycine
nl streptomycin and isoniazid streptomycine met isoniazide
nl sulbenicillin sulbenicilline
nl sulfadiazine and tetroxoprim sulfadiazine met tetroxoprim
nl sulfadiazine and trimethoprim sulfadiazine met trimethoprim
nl sulfadimidine and trimethoprim sulfadimidine met trimethoprim
nl sulfafurazole sulfafurazol
nl sulfaisodimidine sulfisomidine
nl sulfalene sulfaleen
nl sulfamazone sulfamazon
nl sulfamerazine and trimethoprim sulfamerazine met trimethoprim
nl sulfamethizole sulfamethizol
nl sulfamethoxazole sulfamethoxazol
nl sulfamethoxazole and trimethoprim sulfamethoxazol met trimethoprim
nl sulfametoxydiazine sulfamethoxydiazine
nl sulfametrole and trimethoprim sulfametrol met trimethoprim
nl sulfamoxole sulfamoxol
nl sulfamoxole and trimethoprim sulfamoxol met trimethoprim
nl sulfaperin sulfaperine
nl sulfaphenazole sulfafenazol
nl sulfathiazole sulfathiazol
nl sulfathiourea sulfathioureum
nl sulfonamides, combinations with other antibacterials (excl, trimethoprim) sulfonamiden met andere antibacteriele middelen (exc trim)
nl sultamicillin sultamicilline
nl talampicillin talampicilline
nl teicoplanin teicoplanine
nl telithromycin telitromycine
nl temafloxacin temafloxacine
nl temocillin temocilline
nl tenofovir disoproxil tenofovir
nl terizidone terizidon
nl tetanus antitoxin serum tegen tetanus
nl tetanus immunoglobulin tetanusimmunoglobuline
nl tetanus toxoid tetanustoxoide
nl tetanus toxoid, combinations with diphtheria toxoid tetanustoxoide met difterietoxoide
nl tetanus toxoid, combinations with tetanus immunoglobulin tetanustoxoide met tetanusimmunoglobuline
nl thiamphenicol thiamfenicol
nl thiamphenicol, combinations thiamfenicol combinatiepreparaten
nl thioacetazone and isoniazid thioacetazon met isoniazide
nl ticarcillin ticarcilline
nl ticarcillin and beta-lactamase inhibitor ticarcilline met enzymremmer
nl tinidazole tinidazol
nl tobramycin tobramycine
nl troleandomycin troleandomycine
nl trovafloxacin trovafloxacine
nl tuberculosis, live attenuated bacillus calmette guerin, levend verzwakt
nl typhoid, combinations with paratyphi types buiktyfus met paratyfus-typen
nl typhoid, inactivated, whole cell buiktyfus, geinactiveerd, hele cel
nl typhoid, oral, live attenuated buiktyfus, oraal, levend verzwakt
nl typhoid, purified polysaccharide antigen buiktyfus, gezuiverd polysaccharidenantigeen
nl typhoid-hepatitis A buiktyfus-hepatitis A
nl typhus exanthematicus, inactivated, whole cell vlektyfus, geinactiveerd, hele cel
nl vaccinia immunoglobulin vaccinia-immunoglobuline
nl vancomycin vancomycine
nl varicella, live attenuated varicella, levend verzwakt
nl varicella/zoster immunoglobulin varicella-zoster-immunoglobuline
nl voriconazole voriconazol
nl yellow fever, live attenuated gele koorts, levend verzwakt
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