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new antibiotics

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dr. M.S. (Matthijs) Berends
2019-05-10 16:44:59 +02:00
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commit 68cc7ef0d0
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inst/eucast/eucast_rules.tsv
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@ -1,182 +1,182 @@
if_mo_property like_is_one_of this_value and_these_antibiotics have_these_values then_change_these_antibiotics to_value reference.rule reference.rule_group
order is Enterobacteriales ampi S amox S Enterobacteriales (Order) Breakpoints
order is Enterobacteriales ampi I amox I Enterobacteriales (Order) Breakpoints
order is Enterobacteriales ampi R amox R Enterobacteriales (Order) Breakpoints
genus is Staphylococcus peni, cfox S ampi, amox, pipe, tica S Staphylococcus Breakpoints
genus is Staphylococcus peni, cfox R, S oxac, clox S Staphylococcus Breakpoints
genus is Staphylococcus cfox R all_betalactams R Staphylococcus Breakpoints
genus_species is Staphylococcus saprophyticus ampi S amox, amcl, pipe, pita S Staphylococcus Breakpoints
genus is Staphylococcus cfox S carbapenems, cephalosporins_without_cfta S Staphylococcus Breakpoints
genus is Staphylococcus cfox I carbapenems, cephalosporins_without_cfta I Staphylococcus Breakpoints
genus is Staphylococcus cfox R carbapenems, cephalosporins_without_cfta R Staphylococcus Breakpoints
genus is Staphylococcus norf S cipr, levo, moxi, oflo S Staphylococcus Breakpoints
genus is Staphylococcus eryt S azit, clar, roxi S Staphylococcus Breakpoints
genus is Staphylococcus eryt I azit, clar, roxi I Staphylococcus Breakpoints
genus is Staphylococcus eryt R azit, clar, roxi R Staphylococcus Breakpoints
genus is Staphylococcus tetr S doxy, mino S Staphylococcus Breakpoints
genus_species is Enterococcus faecium ampi R all_betalactams R Enterococcus Breakpoints
genus is Enterococcus ampi S amox, amcl, pipe, pita S Enterococcus Breakpoints
genus is Enterococcus ampi I amox, amcl, pipe, pita I Enterococcus Breakpoints
genus is Enterococcus ampi R amox, amcl, pipe, pita R Enterococcus Breakpoints
genus is Enterococcus norf S cipr, levo S Enterococcus Breakpoints
genus is Enterococcus norf I cipr, levo I Enterococcus Breakpoints
genus is Enterococcus norf R cipr, levo R Enterococcus Breakpoints
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ peni S aminopenicillins, ureidopenicillins, cephalosporins, carbapenems, clox, amcl S Streptococcus groups A, B, C, G Breakpoints
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ peni I aminopenicillins, ureidopenicillins, cephalosporins, carbapenems, clox, amcl I Streptococcus groups A, B, C, G Breakpoints
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ peni R aminopenicillins, ureidopenicillins, cephalosporins, carbapenems, clox, amcl R Streptococcus groups A, B, C, G Breakpoints
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ norf S levo, moxi S Streptococcus groups A, B, C, G Breakpoints
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ eryt S azit, clar, roxi S Streptococcus groups A, B, C, G Breakpoints
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ eryt I azit, clar, roxi I Streptococcus groups A, B, C, G Breakpoints
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ eryt R azit, clar, roxi R Streptococcus groups A, B, C, G Breakpoints
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ tetr S doxy, mino S Streptococcus groups A, B, C, G Breakpoints
genus_species is Streptococcus pneumoniae peni S ampi, amox, amcl, pipe, pita S Streptococcus pneumoniae Breakpoints
genus_species is Streptococcus pneumoniae ampi S amox, amcl, pipe, pita S Streptococcus pneumoniae Breakpoints
genus_species is Streptococcus pneumoniae ampi I amox, amcl, pipe, pita I Streptococcus pneumoniae Breakpoints
genus_species is Streptococcus pneumoniae ampi R amox, amcl, pipe, pita R Streptococcus pneumoniae Breakpoints
genus_species is Streptococcus pneumoniae norf S levo, moxi S Streptococcus pneumoniae Breakpoints
genus_species is Streptococcus pneumoniae eryt S azit, clar, roxi S Streptococcus pneumoniae Breakpoints
genus_species is Streptococcus pneumoniae eryt I azit, clar, roxi I Streptococcus pneumoniae Breakpoints
genus_species is Streptococcus pneumoniae eryt R azit, clar, roxi R Streptococcus pneumoniae Breakpoints
genus_species is Streptococcus pneumoniae tetr S doxy, mino S Streptococcus pneumoniae Breakpoints
genus_species like ^Streptococcus (australis|bovis|constellatus|cristatus|gallolyticus|gordonii|infantarius|infantis|mitis|mutans|oligofermentans|oralis|peroris|pseudopneumoniae|salivarius|sinensis|sobrinus|thermophilus|vestibularis|anginosus|equinus|intermedius|parasanguinis|sanguinis)$ peni S ampi, amox, amcl, pipe, pita S Viridans group streptococci Breakpoints
genus_species like ^Streptococcus (australis|bovis|constellatus|cristatus|gallolyticus|gordonii|infantarius|infantis|mitis|mutans|oligofermentans|oralis|peroris|pseudopneumoniae|salivarius|sinensis|sobrinus|thermophilus|vestibularis|anginosus|equinus|intermedius|parasanguinis|sanguinis)$ ampi S amox, amcl, pipe, pita S Viridans group streptococci Breakpoints
genus_species like ^Streptococcus (australis|bovis|constellatus|cristatus|gallolyticus|gordonii|infantarius|infantis|mitis|mutans|oligofermentans|oralis|peroris|pseudopneumoniae|salivarius|sinensis|sobrinus|thermophilus|vestibularis|anginosus|equinus|intermedius|parasanguinis|sanguinis)$ ampi I amox, amcl, pipe, pita I Viridans group streptococci Breakpoints
genus_species like ^Streptococcus (australis|bovis|constellatus|cristatus|gallolyticus|gordonii|infantarius|infantis|mitis|mutans|oligofermentans|oralis|peroris|pseudopneumoniae|salivarius|sinensis|sobrinus|thermophilus|vestibularis|anginosus|equinus|intermedius|parasanguinis|sanguinis)$ ampi R amox, amcl, pipe, pita R Viridans group streptococci Breakpoints
genus_species is Haemophilus influenzae ampi S amox, pipe S Haemophilus influenzae Breakpoints
genus_species is ^Haemophilus influenzae ampi I amox, pipe I Haemophilus influenzae Breakpoints
genus_species is Haemophilus influenzae ampi R amox, pipe R Haemophilus influenzae Breakpoints
genus_species is Haemophilus influenzae peni S ampi, amox, amcl, pipe, pita S Haemophilus influenzae Breakpoints
genus_species is Haemophilus influenzae amcl S pita S Haemophilus influenzae Breakpoints
genus_species is Haemophilus influenzae amcl I pita I Haemophilus influenzae Breakpoints
genus_species is Haemophilus influenzae amcl R pita R Haemophilus influenzae Breakpoints
genus_species is Haemophilus influenzae nali S cipr, levo, moxi, oflo S Haemophilus influenzae Breakpoints
genus_species is Haemophilus influenzae tetr S doxy, mino S Haemophilus influenzae Breakpoints
genus_species is Moraxella catarrhalis amcl S pita S Moraxella catarrhalis Breakpoints
genus_species is Moraxella catarrhalis amcl I pita I Moraxella catarrhalis Breakpoints
genus_species is Moraxella catarrhalis amcl R pita R Moraxella catarrhalis Breakpoints
genus_species is Moraxella catarrhalis nali S cipr, levo, moxi, oflo S Moraxella catarrhalis Breakpoints
genus_species is Moraxella catarrhalis eryt S azit, clar, roxi S Moraxella catarrhalis Breakpoints
genus_species is Moraxella catarrhalis eryt I azit, clar, roxi I Moraxella catarrhalis Breakpoints
genus_species is Moraxella catarrhalis eryt R azit, clar, roxi R Moraxella catarrhalis Breakpoints
genus_species is Moraxella catarrhalis tetr S doxy, mino S Moraxella catarrhalis Breakpoints
genus one_of Actinomyces, Bifidobacterium, Clostridium, Cutibacterium, Eggerthella, Eubacterium, Lactobacillus , Propionibacterium peni S ampi, amox, pipe, pita, tica S Anaerobic Gram positives Breakpoints
genus one_of Actinomyces, Bifidobacterium, Clostridium, Cutibacterium, Eggerthella, Eubacterium, Lactobacillus , Propionibacterium peni I ampi, amox, pipe, pita, tica I Anaerobic Gram positives Breakpoints
genus one_of Actinomyces, Bifidobacterium, Clostridium, Cutibacterium, Eggerthella, Eubacterium, Lactobacillus , Propionibacterium peni R ampi, amox, pipe, pita, tica R Anaerobic Gram positives Breakpoints
genus one_of Bacteroides, Bilophila , Fusobacterium, Mobiluncus, Porphyromonas, Prevotella peni S ampi, amox, pipe, pita, tica S Anaerobic Gram negatives Breakpoints
genus one_of Bacteroides, Bilophila , Fusobacterium, Mobiluncus, Porphyromonas, Prevotella peni I ampi, amox, pipe, pita, tica I Anaerobic Gram negatives Breakpoints
genus one_of Bacteroides, Bilophila , Fusobacterium, Mobiluncus, Porphyromonas, Prevotella peni R ampi, amox, pipe, pita, tica R Anaerobic Gram negatives Breakpoints
genus_species is Pasteurella multocida peni S ampi, amox S Pasteurella multocida Breakpoints
genus_species is Pasteurella multocida peni I ampi, amox I Pasteurella multocida Breakpoints
genus_species is Pasteurella multocida peni R ampi, amox R Pasteurella multocida Breakpoints
genus_species is Campylobacter coli eryt S azit, clar S Campylobacter coli Breakpoints
genus_species is Campylobacter coli eryt I azit, clar I Campylobacter coli Breakpoints
genus_species is Campylobacter coli eryt R azit, clar R Campylobacter coli Breakpoints
genus_species is Campylobacter coli tetr S doxy S Campylobacter coli Breakpoints
genus_species is Campylobacter coli tetr I doxy I Campylobacter coli Breakpoints
genus_species is Campylobacter coli tetr R doxy R Campylobacter coli Breakpoints
genus_species is Campylobacter jejuni eryt S azit, clar S Campylobacter jejuni Breakpoints
genus_species is Campylobacter jejuni eryt I azit, clar I Campylobacter jejuni Breakpoints
genus_species is Campylobacter jejuni eryt R azit, clar R Campylobacter jejuni Breakpoints
genus_species is Campylobacter jejuni tetr S doxy S Campylobacter jejuni Breakpoints
genus_species is Campylobacter jejuni tetr I doxy I Campylobacter jejuni Breakpoints
genus_species is Campylobacter jejuni tetr R doxy R Campylobacter jejuni Breakpoints
genus_species is Aerococcus sanguinicola norf S fluoroquinolones S Aerococcus sanguinicola Breakpoints
genus_species is Aerococcus sanguinicola norf I fluoroquinolones I Aerococcus sanguinicola Breakpoints
genus_species is Aerococcus sanguinicola norf R fluoroquinolones R Aerococcus sanguinicola Breakpoints
genus_species is Aerococcus sanguinicola cipr S levo S Aerococcus sanguinicola Breakpoints
genus_species is Aerococcus sanguinicola cipr I levo I Aerococcus sanguinicola Breakpoints
genus_species is Aerococcus sanguinicola cipr R levo R Aerococcus urinae Breakpoints
genus_species is Aerococcus urinae norf S fluoroquinolones S Aerococcus urinae Breakpoints
genus_species is Aerococcus urinae norf I fluoroquinolones I Aerococcus urinae Breakpoints
genus_species is Aerococcus urinae norf R fluoroquinolones R Aerococcus urinae Breakpoints
genus_species is Aerococcus urinae cipr S levo S Aerococcus urinae Breakpoints
genus_species is Aerococcus urinae cipr I levo I Aerococcus urinae Breakpoints
genus_species is Aerococcus urinae cipr R levo R Aerococcus urinae Breakpoints
genus_species is Kingella kingae peni S ampi, amox S Kingella kingae Breakpoints
genus_species is Kingella kingae peni I ampi, amox I Kingella kingae Breakpoints
genus_species is Kingella kingae peni R ampi, amox R Kingella kingae Breakpoints
genus_species is Kingella kingae eryt S azit, clar S Kingella kingae Breakpoints
genus_species is Kingella kingae eryt I azit, clar I Kingella kingae Breakpoints
genus_species is Kingella kingae eryt R azit, clar R Kingella kingae Breakpoints
genus_species is Kingella kingae tetr S doxy S Kingella kingae Breakpoints
family is Enterobacteriaceae peni, glycopeptides, fusi, macrolides, linc, streptogramins, rifa, dapt, line R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
fullname like ^Citrobacter (koseri|amalonaticus|sedlakii|farmeri|rodentium) aminopenicillins, tica R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
fullname like ^Citrobacter (freundii|braakii|murliniae|werkmanii|youngae) aminopenicillins, amcl, czol, cfox R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Enterobacter cloacae aminopenicillins, amcl, czol, cfox R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Enterobacter aerogenes aminopenicillins, amcl, czol, cfox R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Escherichia hermanni aminopenicillins, tica R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Hafnia alvei aminopenicillins, amcl, czol, cfox R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus is Klebsiella aminopenicillins, tica R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Morganella morganii aminopenicillins, amcl, czol, tetracyclines, polymyxins, nitr R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Proteus mirabilis tetracyclines, tige, polymyxins, nitr R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Proteus penneri aminopenicillins, czol, cfur, tetracyclines, tige, polymyxins, nitr R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Proteus vulgaris aminopenicillins, czol, cfur, tetracyclines, tige, polymyxins, nitr R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Providencia rettgeri aminopenicillins, amcl, czol, cfur, tetracyclines, tige, polymyxins, nitr R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Providencia stuartii aminopenicillins, amcl, czol, cfur, tetracyclines, tige, polymyxins, nitr R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus is Raoultella aminopenicillins, tica R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Serratia marcescens aminopenicillins, amcl, czol, cfox, cfur, tetracyclines[tetracyclines != na.rm(mino)], polymyxins, nitr R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Yersinia enterocolitica aminopenicillins, amcl, tica, czol, cfox R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Yersinia pseudotuberculosis poly, coli R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus one_of Achromobacter, Acinetobacter, Alcaligenes, Bordatella, Burkholderia, Elizabethkingia, Flavobacterium, Ochrobactrum, Pseudomonas, Stenotrophomonas peni, cfox, cfur, glycopeptides, fusi, macrolides, linc, streptogramins, rifa, dapt, line R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus_species is Acinetobacter baumannii aminopenicillins, amcl, czol, cfot, cftr, aztr, erta, trim, fosf, doxy, tetr R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus_species is Acinetobacter pittii aminopenicillins, amcl, czol, cfot, cftr, aztr, erta, trim, fosf, doxy, tetr R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus_species is Acinetobacter nosocomialis aminopenicillins, amcl, czol, cfot, cftr, aztr, erta, trim, fosf, doxy, tetr R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus_species is Acinetobacter calcoaceticus aminopenicillins, amcl, czol, cfot, cftr, aztr, erta, trim, fosf, doxy, tetr R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus_species is Achromobacter xylosoxidans aminopenicillins, czol, cfot, cftr, erta R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
fullname like ^Burkholderia (cepacia|multivorans|cenocepacia|stabilis|vietnamiensis|dolosa|ambifaria|anthina|pyrrocinia|ubonensis) aminopenicillins, amcl, tica, pipe, pita, czol, cfot, cftr, aztr, erta, cipr, chlo, aminoglycosides, trim, fosf, polymyxins R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus_species is Elizabethkingia meningoseptica aminopenicillins, amcl, tica, czol, cfot, cftr, cfta, cfep, aztr, erta, imip, mero, polymyxins R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus_species is Ochrobactrum anthropi aminopenicillins, amcl, tica, pipe, pita, czol, cfot, cftr, cfta, cfep, aztr, erta R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus_species is Pseudomonas aeruginosa aminopenicillins, amcl, czol, cfot, cftr, erta, chlo, kana, neom, trim, trsu, tetracyclines, tige R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus_species is Stenotrophomonas maltophilia aminopenicillins, amcl, tica, pipe, pita, czol, cfot, cftr, cfta, aztr, erta, imip, mero, aminoglycosides, trim, fosf, tetr R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus one_of Haemophilus, Moraxella, Neisseria, Campylobacter glycopeptides, linc, dapt, line R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
genus_species is Haemophilus influenzae fusi, streptogramins R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
genus_species is Moraxella catarrhalis trim R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
genus is Neisseria trim R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
genus_species is Campylobacter fetus fusi, streptogramins, trim, nali R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
genus_species is Campylobacter jejuni fusi, streptogramins, trim R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
genus_species is Campylobacter coli fusi, streptogramins, trim R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
gramstain is Gram positive aztr, polymyxins, nali R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus saprophyticus fusi, cfta, fosf, novo R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus cohnii cfta, novo R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus xylosus cfta, novo R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus capitis cfta, fosf R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus aureus cfta R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus epidermidis cfta R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus coagulase-negative cfta R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus hominis cfta R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus haemolyticus cfta R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus intermedius cfta R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus pseudintermedius cfta R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus is Streptococcus fusi, cfta, aminoglycosides R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Enterococcus faecalis fusi, cfta, cephalosporins_without_cfta, aminoglycosides, macrolides, clin, qida, trim, trsu R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Enterococcus gallinarum fusi, cfta, cephalosporins_without_cfta, aminoglycosides, macrolides, clin, qida, vanc, trim, trsu R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Enterococcus casseliflavus fusi, cfta, cephalosporins_without_cfta, aminoglycosides, macrolides, clin, qida, vanc, trim, trsu R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Enterococcus faecium fusi, cfta, cephalosporins_without_cfta, aminoglycosides, macrolides, trim, trsu R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus is Corynebacterium fosf R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
order is Enterobacteriales AMP S AMX S Enterobacteriales (Order) Breakpoints
order is Enterobacteriales AMP I AMX I Enterobacteriales (Order) Breakpoints
order is Enterobacteriales AMP R AMX R Enterobacteriales (Order) Breakpoints
genus is Staphylococcus PEN, FOX S AMP, AMX, PIP, TIC S Staphylococcus Breakpoints
genus is Staphylococcus PEN, FOX R, S OXA, FLC S Staphylococcus Breakpoints
genus is Staphylococcus FOX R all_betalactams R Staphylococcus Breakpoints
genus_species is Staphylococcus saprophyticus AMP S AMX, AMC, PIP, TZP S Staphylococcus Breakpoints
genus is Staphylococcus FOX S carbapenems, cephalosporins_without_CAZ S Staphylococcus Breakpoints
genus is Staphylococcus FOX I carbapenems, cephalosporins_without_CAZ I Staphylococcus Breakpoints
genus is Staphylococcus FOX R carbapenems, cephalosporins_without_CAZ R Staphylococcus Breakpoints
genus is Staphylococcus NOR S CIP, LVX, MFX, OFX S Staphylococcus Breakpoints
genus is Staphylococcus ERY S AZM, CLR, RXT S Staphylococcus Breakpoints
genus is Staphylococcus ERY I AZM, CLR, RXT I Staphylococcus Breakpoints
genus is Staphylococcus ERY R AZM, CLR, RXT R Staphylococcus Breakpoints
genus is Staphylococcus TCY S DOX, MNO S Staphylococcus Breakpoints
genus_species is Enterococcus faecium AMP R all_betalactams R Enterococcus Breakpoints
genus is Enterococcus AMP S AMX, AMC, PIP, TZP S Enterococcus Breakpoints
genus is Enterococcus AMP I AMX, AMC, PIP, TZP I Enterococcus Breakpoints
genus is Enterococcus AMP R AMX, AMC, PIP, TZP R Enterococcus Breakpoints
genus is Enterococcus NOR S CIP, LVX S Enterococcus Breakpoints
genus is Enterococcus NOR I CIP, LVX I Enterococcus Breakpoints
genus is Enterococcus NOR R CIP, LVX R Enterococcus Breakpoints
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ PEN S aminopenicillins, ureidopenicillins, cephalosporins_without_CAZ, carbapenems, FLC, AMC S Streptococcus groups A, B, C, G Breakpoints
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ PEN I aminopenicillins, ureidopenicillins, cephalosporins_without_CAZ, carbapenems, FLC, AMC I Streptococcus groups A, B, C, G Breakpoints
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ PEN R aminopenicillins, ureidopenicillins, cephalosporins_without_CAZ, carbapenems, FLC, AMC R Streptococcus groups A, B, C, G Breakpoints
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ NOR S LVX, MFX S Streptococcus groups A, B, C, G Breakpoints
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ ERY S AZM, CLR, RXT S Streptococcus groups A, B, C, G Breakpoints
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ ERY I AZM, CLR, RXT I Streptococcus groups A, B, C, G Breakpoints
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ ERY R AZM, CLR, RXT R Streptococcus groups A, B, C, G Breakpoints
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ TCY S DOX, MNO S Streptococcus groups A, B, C, G Breakpoints
genus_species is Streptococcus pneumoniae PEN S AMP, AMX, AMC, PIP, TZP S Streptococcus pneumoniae Breakpoints
genus_species is Streptococcus pneumoniae AMP S AMX, AMC, PIP, TZP S Streptococcus pneumoniae Breakpoints
genus_species is Streptococcus pneumoniae AMP I AMX, AMC, PIP, TZP I Streptococcus pneumoniae Breakpoints
genus_species is Streptococcus pneumoniae AMP R AMX, AMC, PIP, TZP R Streptococcus pneumoniae Breakpoints
genus_species is Streptococcus pneumoniae NOR S LVX, MFX S Streptococcus pneumoniae Breakpoints
genus_species is Streptococcus pneumoniae ERY S AZM, CLR, RXT S Streptococcus pneumoniae Breakpoints
genus_species is Streptococcus pneumoniae ERY I AZM, CLR, RXT I Streptococcus pneumoniae Breakpoints
genus_species is Streptococcus pneumoniae ERY R AZM, CLR, RXT R Streptococcus pneumoniae Breakpoints
genus_species is Streptococcus pneumoniae TCY S DOX, MNO S Streptococcus pneumoniae Breakpoints
genus_species like ^Streptococcus (australis|bovis|constellatus|cristatus|gallolyticus|gordonii|infantarius|infantis|mitis|mutans|oligofermentans|oralis|peroris|pseudopneumoniae|salivarius|sinensis|sobrinus|thermophilus|vestibularis|anginosus|equinus|intermedius|parasanguinis|sanguinis)$ PEN S AMP, AMX, AMC, PIP, TZP S Viridans group streptococci Breakpoints
genus_species like ^Streptococcus (australis|bovis|constellatus|cristatus|gallolyticus|gordonii|infantarius|infantis|mitis|mutans|oligofermentans|oralis|peroris|pseudopneumoniae|salivarius|sinensis|sobrinus|thermophilus|vestibularis|anginosus|equinus|intermedius|parasanguinis|sanguinis)$ AMP S AMX, AMC, PIP, TZP S Viridans group streptococci Breakpoints
genus_species like ^Streptococcus (australis|bovis|constellatus|cristatus|gallolyticus|gordonii|infantarius|infantis|mitis|mutans|oligofermentans|oralis|peroris|pseudopneumoniae|salivarius|sinensis|sobrinus|thermophilus|vestibularis|anginosus|equinus|intermedius|parasanguinis|sanguinis)$ AMP I AMX, AMC, PIP, TZP I Viridans group streptococci Breakpoints
genus_species like ^Streptococcus (australis|bovis|constellatus|cristatus|gallolyticus|gordonii|infantarius|infantis|mitis|mutans|oligofermentans|oralis|peroris|pseudopneumoniae|salivarius|sinensis|sobrinus|thermophilus|vestibularis|anginosus|equinus|intermedius|parasanguinis|sanguinis)$ AMP R AMX, AMC, PIP, TZP R Viridans group streptococci Breakpoints
genus_species is Haemophilus influenzae AMP S AMX, PIP S Haemophilus influenzae Breakpoints
genus_species is ^Haemophilus influenzae AMP I AMX, PIP I Haemophilus influenzae Breakpoints
genus_species is Haemophilus influenzae AMP R AMX, PIP R Haemophilus influenzae Breakpoints
genus_species is Haemophilus influenzae PEN S AMP, AMX, AMC, PIP, TZP S Haemophilus influenzae Breakpoints
genus_species is Haemophilus influenzae AMC S TZP S Haemophilus influenzae Breakpoints
genus_species is Haemophilus influenzae AMC I TZP I Haemophilus influenzae Breakpoints
genus_species is Haemophilus influenzae AMC R TZP R Haemophilus influenzae Breakpoints
genus_species is Haemophilus influenzae NAL S CIP, LVX, MFX, OFX S Haemophilus influenzae Breakpoints
genus_species is Haemophilus influenzae TCY S DOX, MNO S Haemophilus influenzae Breakpoints
genus_species is Moraxella catarrhalis AMC S TZP S Moraxella catarrhalis Breakpoints
genus_species is Moraxella catarrhalis AMC I TZP I Moraxella catarrhalis Breakpoints
genus_species is Moraxella catarrhalis AMC R TZP R Moraxella catarrhalis Breakpoints
genus_species is Moraxella catarrhalis NAL S CIP, LVX, MFX, OFX S Moraxella catarrhalis Breakpoints
genus_species is Moraxella catarrhalis ERY S AZM, CLR, RXT S Moraxella catarrhalis Breakpoints
genus_species is Moraxella catarrhalis ERY I AZM, CLR, RXT I Moraxella catarrhalis Breakpoints
genus_species is Moraxella catarrhalis ERY R AZM, CLR, RXT R Moraxella catarrhalis Breakpoints
genus_species is Moraxella catarrhalis TCY S DOX, MNO S Moraxella catarrhalis Breakpoints
genus one_of Actinomyces, Bifidobacterium, Clostridium, Cutibacterium, Eggerthella, Eubacterium, Lactobacillus, Propionibacterium PEN S AMP, AMX, PIP, TZP, TIC S Anaerobic Gram positives Breakpoints
genus one_of Actinomyces, Bifidobacterium, Clostridium, Cutibacterium, Eggerthella, Eubacterium, Lactobacillus, Propionibacterium PEN I AMP, AMX, PIP, TZP, TIC I Anaerobic Gram positives Breakpoints
genus one_of Actinomyces, Bifidobacterium, Clostridium, Cutibacterium, Eggerthella, Eubacterium, Lactobacillus, Propionibacterium PEN R AMP, AMX, PIP, TZP, TIC R Anaerobic Gram positives Breakpoints
genus one_of Bacteroides, Bilophila , Fusobacterium, Mobiluncus, Porphyromonas, Prevotella PEN S AMP, AMX, PIP, TZP, TIC S Anaerobic Gram negatives Breakpoints
genus one_of Bacteroides, Bilophila , Fusobacterium, Mobiluncus, Porphyromonas, Prevotella PEN I AMP, AMX, PIP, TZP, TIC I Anaerobic Gram negatives Breakpoints
genus one_of Bacteroides, Bilophila , Fusobacterium, Mobiluncus, Porphyromonas, Prevotella PEN R AMP, AMX, PIP, TZP, TIC R Anaerobic Gram negatives Breakpoints
genus_species is Pasteurella multocida PEN S AMP, AMX S Pasteurella multocida Breakpoints
genus_species is Pasteurella multocida PEN I AMP, AMX I Pasteurella multocida Breakpoints
genus_species is Pasteurella multocida PEN R AMP, AMX R Pasteurella multocida Breakpoints
genus_species is Campylobacter coli ERY S AZM, CLR S Campylobacter coli Breakpoints
genus_species is Campylobacter coli ERY I AZM, CLR I Campylobacter coli Breakpoints
genus_species is Campylobacter coli ERY R AZM, CLR R Campylobacter coli Breakpoints
genus_species is Campylobacter coli TCY S DOX S Campylobacter coli Breakpoints
genus_species is Campylobacter coli TCY I DOX I Campylobacter coli Breakpoints
genus_species is Campylobacter coli TCY R DOX R Campylobacter coli Breakpoints
genus_species is Campylobacter jejuni ERY S AZM, CLR S Campylobacter jejuni Breakpoints
genus_species is Campylobacter jejuni ERY I AZM, CLR I Campylobacter jejuni Breakpoints
genus_species is Campylobacter jejuni ERY R AZM, CLR R Campylobacter jejuni Breakpoints
genus_species is Campylobacter jejuni TCY S DOX S Campylobacter jejuni Breakpoints
genus_species is Campylobacter jejuni TCY I DOX I Campylobacter jejuni Breakpoints
genus_species is Campylobacter jejuni TCY R DOX R Campylobacter jejuni Breakpoints
genus_species is Aerococcus sanguinicola NOR S fluoroquinolones S Aerococcus sanguinicola Breakpoints
genus_species is Aerococcus sanguinicola NOR I fluoroquinolones I Aerococcus sanguinicola Breakpoints
genus_species is Aerococcus sanguinicola NOR R fluoroquinolones R Aerococcus sanguinicola Breakpoints
genus_species is Aerococcus sanguinicola CIP S LVX S Aerococcus sanguinicola Breakpoints
genus_species is Aerococcus sanguinicola CIP I LVX I Aerococcus sanguinicola Breakpoints
genus_species is Aerococcus sanguinicola CIP R LVX R Aerococcus urinae Breakpoints
genus_species is Aerococcus urinae NOR S fluoroquinolones S Aerococcus urinae Breakpoints
genus_species is Aerococcus urinae NOR I fluoroquinolones I Aerococcus urinae Breakpoints
genus_species is Aerococcus urinae NOR R fluoroquinolones R Aerococcus urinae Breakpoints
genus_species is Aerococcus urinae CIP S LVX S Aerococcus urinae Breakpoints
genus_species is Aerococcus urinae CIP I LVX I Aerococcus urinae Breakpoints
genus_species is Aerococcus urinae CIP R LVX R Aerococcus urinae Breakpoints
genus_species is Kingella kingae PEN S AMP, AMX S Kingella kingae Breakpoints
genus_species is Kingella kingae PEN I AMP, AMX I Kingella kingae Breakpoints
genus_species is Kingella kingae PEN R AMP, AMX R Kingella kingae Breakpoints
genus_species is Kingella kingae ERY S AZM, CLR S Kingella kingae Breakpoints
genus_species is Kingella kingae ERY I AZM, CLR I Kingella kingae Breakpoints
genus_species is Kingella kingae ERY R AZM, CLR R Kingella kingae Breakpoints
genus_species is Kingella kingae TCY S DOX S Kingella kingae Breakpoints
family is Enterobacteriaceae PEN, glycopeptides, FUS, macrolides, LIN, streptogramins, RIF, DAP, LNZ R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
fullname like ^Citrobacter (koseri|amalonaticus|sedlakii|farmeri|rodentium) aminopenicillins, TIC R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
fullname like ^Citrobacter (freundii|braakii|murliniae|werkmanii|youngae) aminopenicillins, AMC, CZO, FOX R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Enterobacter cloacae aminopenicillins, AMC, CZO, FOX R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Enterobacter aerogenes aminopenicillins, AMC, CZO, FOX R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Escherichia hermanni aminopenicillins, TIC R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Hafnia alvei aminopenicillins, AMC, CZO, FOX R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus is Klebsiella aminopenicillins, TIC R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Morganella morganii aminopenicillins, AMC, CZO, tetracyclines, polymyxins, NIT R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Proteus mirabilis tetracyclines, TGC, polymyxins, NIT R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Proteus penneri aminopenicillins, CZO, CXM, tetracyclines, TGC, polymyxins, NIT R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Proteus vulgaris aminopenicillins, CZO, CXM, tetracyclines, TGC, polymyxins, NIT R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Providencia rettgeri aminopenicillins, AMC, CZO, CXM, tetracyclines, TGC, polymyxins, NIT R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Providencia stuartii aminopenicillins, AMC, CZO, CXM, tetracyclines, TGC, polymyxins, NIT R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus is Raoultella aminopenicillins, TIC R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Serratia marcescens aminopenicillins, AMC, CZO, FOX, CXM, DOX, TCY, polymyxins, NIT R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Yersinia enterocolitica aminopenicillins, AMC, TIC, CZO, FOX R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus_species is Yersinia pseudotuberculosis poly, COL R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
genus one_of Achromobacter, Acinetobacter, Alcaligenes, Bordatella, Burkholderia, Elizabethkingia, Flavobacterium, Ochrobactrum, Pseudomonas, Stenotrophomonas PEN, FOX, CXM, glycopeptides, FUS, macrolides, LIN, streptogramins, RIF, DAP, LNZ R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus_species is Acinetobacter baumannii aminopenicillins, AMC, CZO, CTX, CRO, ATM, ETP, TMP, FOS, DOX, TCY R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus_species is Acinetobacter pittii aminopenicillins, AMC, CZO, CTX, CRO, ATM, ETP, TMP, FOS, DOX, TCY R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus_species is Acinetobacter nosocomialis aminopenicillins, AMC, CZO, CTX, CRO, ATM, ETP, TMP, FOS, DOX, TCY R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus_species is Acinetobacter calcoaceticus aminopenicillins, AMC, CZO, CTX, CRO, ATM, ETP, TMP, FOS, DOX, TCY R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus_species is Achromobacter xylosoxidans aminopenicillins, CZO, CTX, CRO, ETP R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
fullname like ^Burkholderia (cepacia|multivorans|cenocepacia|stabilis|vietnamiensis|dolosa|ambifaria|anthina|pyrrocinia|ubonensis) aminopenicillins, AMC, TIC, PIP, TZP, CZO, CTX, CRO, ATM, ETP, CIP, CHL, aminoglycosides, TMP, FOS, polymyxins R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus_species is Elizabethkingia meningoseptica aminopenicillins, AMC, TIC, CZO, CTX, CRO, CAZ, FEP, ATM, ETP, IPM, MEM, polymyxins R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus_species is Ochrobactrum anthropi aminopenicillins, AMC, TIC, PIP, TZP, CZO, CTX, CRO, CAZ, FEP, ATM, ETP R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus_species is Pseudomonas aeruginosa aminopenicillins, AMC, CZO, CTX, CRO, ETP, CHL, KAN, NEO, TMP, SXT, tetracyclines, TGC R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus_species is Stenotrophomonas maltophilia aminopenicillins, AMC, TIC, PIP, TZP, CZO, CTX, CRO, CAZ, ATM, ETP, IPM, MEM, aminoglycosides, TMP, FOS, TCY R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
genus one_of Haemophilus, Moraxella, Neisseria, Campylobacter glycopeptides, LIN, DAP, LNZ R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
genus_species is Haemophilus influenzae FUS, streptogramins R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
genus_species is Moraxella catarrhalis TMP R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
genus is Neisseria TMP R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
genus_species is Campylobacter fetus FUS, streptogramins, TMP, NAL R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
genus_species is Campylobacter jejuni FUS, streptogramins, TMP R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
genus_species is Campylobacter coli FUS, streptogramins, TMP R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
gramstain is Gram positive ATM, polymyxins, NAL R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus saprophyticus FUS, CAZ, FOS, NOV R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus cohnii CAZ, NOV R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus xylosus CAZ, NOV R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus capitis CAZ, FOS R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus aureus CAZ R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus epidermidis CAZ R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus coagulase-negative CAZ R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus hominis CAZ R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus haemolyticus CAZ R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus intermedius CAZ R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Staphylococcus pseudintermedius CAZ R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus is Streptococcus FUS, CAZ, aminoglycosides R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Enterococcus faecalis FUS, CAZ, cephalosporins_without_CAZ, aminoglycosides, macrolides, CLI, QDA, TMP, SXT R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Enterococcus gallinarum FUS, CAZ, cephalosporins_without_CAZ, aminoglycosides, macrolides, CLI, QDA, VAN, TMP, SXT R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Enterococcus casseliflavus FUS, CAZ, cephalosporins_without_CAZ, aminoglycosides, macrolides, CLI, QDA, VAN, TMP, SXT R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Enterococcus faecium FUS, CAZ, cephalosporins_without_CAZ, aminoglycosides, macrolides, TMP, SXT R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus is Corynebacterium FOS R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Listeria monocytogenes cephalosporins R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus is Leuconostoc, Pediococcus glycopeptides R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus is Lactobacillus glycopeptides R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Clostridium ramosum vanc R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Clostridium innocuum vanc R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G) peni S aminopenicillins, cephalosporins, carbapenems S Table 08: Interpretive rules for B-lactam agents and Gram-positive cocci Expert Rules
genus is Enterococcus ampi R ureidopenicillins, carbapenems R Table 08: Interpretive rules for B-lactam agents and Gram-positive cocci Expert Rules
genus is Enterococcus amox R ureidopenicillins, carbapenems R Table 08: Interpretive rules for B-lactam agents and Gram-positive cocci Expert Rules
family is Enterobacteriaceae tica, pipe R, S pipe R Table 09: Interpretive rules for B-lactam agents and Gram-negative rods Expert Rules
genus is .* eryt S azit, clar S Table 11: Interpretive rules for macrolides, lincosamides, and streptogramins Expert Rules
genus is .* eryt I azit, clar I Table 11: Interpretive rules for macrolides, lincosamides, and streptogramins Expert Rules
genus is .* eryt R azit, clar R Table 11: Interpretive rules for macrolides, lincosamides, and streptogramins Expert Rules
genus is Staphylococcus tobr R kana, amik R Table 12: Interpretive rules for aminoglycosides Expert Rules
genus is Staphylococcus gent R aminoglycosides R Table 12: Interpretive rules for aminoglycosides Expert Rules
family is Enterobacteriaceae gent, tobr I, S gent R Table 12: Interpretive rules for aminoglycosides Expert Rules
family is Enterobacteriaceae gent, tobr R, I tobr R Table 12: Interpretive rules for aminoglycosides Expert Rules
genus is Staphylococcus moxi R fluoroquinolones R Table 13: Interpretive rules for quinolones Expert Rules
genus_species is Streptococcus pneumoniae moxi R fluoroquinolones R Table 13: Interpretive rules for quinolones Expert Rules
family is Enterobacteriaceae cipr R fluoroquinolones R Table 13: Interpretive rules for quinolones Expert Rules
genus_species is Neisseria gonorrhoeae cipr R fluoroquinolones R Table 13: Interpretive rules for quinolones Expert Rules
genus is .* amcl R ampi, amox R Non-EUCAST: ampicillin = R where amoxicillin/clav acid = R Other rules
genus is .* pita R pipe R Non-EUCAST: piperacillin = R where piperacillin/tazobactam = R Other rules
genus is .* trsu R trim R Non-EUCAST: trimethoprim = R where trimethoprim/sulfa = R Other rules
genus is .* ampi S amcl S Non-EUCAST: amoxicillin/clav acid = S where ampicillin = S Other rules
genus is .* amox S amcl S Non-EUCAST: amoxicillin/clav acid = S where ampicillin = S Other rules
genus is .* pipe S pita S Non-EUCAST: piperacillin/tazobactam = S where piperacillin = S Other rules
genus is .* trim S trsu S Non-EUCAST: trimethoprim/sulfa = S where trimethoprim = S Other rules
genus_species is Clostridium ramosum VAN R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species is Clostridium innocuum VAN R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G) PEN S aminopenicillins, cephalosporins_without_CAZ, carbapenems S Table 08: Interpretive rules for B-lactam agents and Gram-positive cocci Expert Rules
genus is Enterococcus AMP R ureidopenicillins, carbapenems R Table 08: Interpretive rules for B-lactam agents and Gram-positive cocci Expert Rules
genus is Enterococcus AMX R ureidopenicillins, carbapenems R Table 08: Interpretive rules for B-lactam agents and Gram-positive cocci Expert Rules
family is Enterobacteriaceae TIC, PIP R, S PIP R Table 09: Interpretive rules for B-lactam agents and Gram-negative rods Expert Rules
genus is .* ERY S AZM, CLR S Table 11: Interpretive rules for macrolides, lincosamides, and streptogramins Expert Rules
genus is .* ERY I AZM, CLR I Table 11: Interpretive rules for macrolides, lincosamides, and streptogramins Expert Rules
genus is .* ERY R AZM, CLR R Table 11: Interpretive rules for macrolides, lincosamides, and streptogramins Expert Rules
genus is Staphylococcus TOB R KAN, amik R Table 12: Interpretive rules for aminoglycosides Expert Rules
genus is Staphylococcus GEN R aminoglycosides R Table 12: Interpretive rules for aminoglycosides Expert Rules
family is Enterobacteriaceae GEN, TOB I, S GEN R Table 12: Interpretive rules for aminoglycosides Expert Rules
family is Enterobacteriaceae GEN, TOB R, I TOB R Table 12: Interpretive rules for aminoglycosides Expert Rules
genus is Staphylococcus MFX R fluoroquinolones R Table 13: Interpretive rules for quinolones Expert Rules
genus_species is Streptococcus pneumoniae MFX R fluoroquinolones R Table 13: Interpretive rules for quinolones Expert Rules
family is Enterobacteriaceae CIP R fluoroquinolones R Table 13: Interpretive rules for quinolones Expert Rules
genus_species is Neisseria gonorrhoeae CIP R fluoroquinolones R Table 13: Interpretive rules for quinolones Expert Rules
genus is .* AMC R AMP, AMX R Non-EUCAST: ampicillin = R where amoxicillin/clav acid = R Other rules
genus is .* TZP R PIP R Non-EUCAST: piperacillin = R where piperacillin/tazobactam = R Other rules
genus is .* SXT R TMP R Non-EUCAST: trimethoprim = R where trimethoprim/sulfa = R Other rules
genus is .* AMP S AMC S Non-EUCAST: amoxicillin/clav acid = S where ampicillin = S Other rules
genus is .* AMX S AMC S Non-EUCAST: amoxicillin/clav acid = S where ampicillin = S Other rules
genus is .* PIP S TZP S Non-EUCAST: piperacillin/tazobactam = S where piperacillin = S Other rules
genus is .* TMP S SXT S Non-EUCAST: trimethoprim/sulfa = S where trimethoprim = S Other rules

1 if_mo_property like_is_one_of this_value and_these_antibiotics have_these_values then_change_these_antibiotics to_value reference.rule reference.rule_group
2 order is Enterobacteriales ampi AMP S amox AMX S Enterobacteriales (Order) Breakpoints
3 order is Enterobacteriales ampi AMP I amox AMX I Enterobacteriales (Order) Breakpoints
4 order is Enterobacteriales ampi AMP R amox AMX R Enterobacteriales (Order) Breakpoints
5 genus is Staphylococcus peni, cfox PEN, FOX S ampi, amox, pipe, tica AMP, AMX, PIP, TIC S Staphylococcus Breakpoints
6 genus is Staphylococcus peni, cfox PEN, FOX R, S oxac, clox OXA, FLC S Staphylococcus Breakpoints
7 genus is Staphylococcus cfox FOX R all_betalactams R Staphylococcus Breakpoints
8 genus_species is Staphylococcus saprophyticus ampi AMP S amox, amcl, pipe, pita AMX, AMC, PIP, TZP S Staphylococcus Breakpoints
9 genus is Staphylococcus cfox FOX S carbapenems, cephalosporins_without_cfta carbapenems, cephalosporins_without_CAZ S Staphylococcus Breakpoints
10 genus is Staphylococcus cfox FOX I carbapenems, cephalosporins_without_cfta carbapenems, cephalosporins_without_CAZ I Staphylococcus Breakpoints
11 genus is Staphylococcus cfox FOX R carbapenems, cephalosporins_without_cfta carbapenems, cephalosporins_without_CAZ R Staphylococcus Breakpoints
12 genus is Staphylococcus norf NOR S cipr, levo, moxi, oflo CIP, LVX, MFX, OFX S Staphylococcus Breakpoints
13 genus is Staphylococcus eryt ERY S azit, clar, roxi AZM, CLR, RXT S Staphylococcus Breakpoints
14 genus is Staphylococcus eryt ERY I azit, clar, roxi AZM, CLR, RXT I Staphylococcus Breakpoints
15 genus is Staphylococcus eryt ERY R azit, clar, roxi AZM, CLR, RXT R Staphylococcus Breakpoints
16 genus is Staphylococcus tetr TCY S doxy, mino DOX, MNO S Staphylococcus Breakpoints
17 genus_species is Enterococcus faecium ampi AMP R all_betalactams R Enterococcus Breakpoints
18 genus is Enterococcus ampi AMP S amox, amcl, pipe, pita AMX, AMC, PIP, TZP S Enterococcus Breakpoints
19 genus is Enterococcus ampi AMP I amox, amcl, pipe, pita AMX, AMC, PIP, TZP I Enterococcus Breakpoints
20 genus is Enterococcus ampi AMP R amox, amcl, pipe, pita AMX, AMC, PIP, TZP R Enterococcus Breakpoints
21 genus is Enterococcus norf NOR S cipr, levo CIP, LVX S Enterococcus Breakpoints
22 genus is Enterococcus norf NOR I cipr, levo CIP, LVX I Enterococcus Breakpoints
23 genus is Enterococcus norf NOR R cipr, levo CIP, LVX R Enterococcus Breakpoints
24 genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ peni PEN S aminopenicillins, ureidopenicillins, cephalosporins, carbapenems, clox, amcl aminopenicillins, ureidopenicillins, cephalosporins_without_CAZ, carbapenems, FLC, AMC S Streptococcus groups A, B, C, G Breakpoints
25 genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ peni PEN I aminopenicillins, ureidopenicillins, cephalosporins, carbapenems, clox, amcl aminopenicillins, ureidopenicillins, cephalosporins_without_CAZ, carbapenems, FLC, AMC I Streptococcus groups A, B, C, G Breakpoints
26 genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ peni PEN R aminopenicillins, ureidopenicillins, cephalosporins, carbapenems, clox, amcl aminopenicillins, ureidopenicillins, cephalosporins_without_CAZ, carbapenems, FLC, AMC R Streptococcus groups A, B, C, G Breakpoints
27 genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ norf NOR S levo, moxi LVX, MFX S Streptococcus groups A, B, C, G Breakpoints
28 genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ eryt ERY S azit, clar, roxi AZM, CLR, RXT S Streptococcus groups A, B, C, G Breakpoints
29 genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ eryt ERY I azit, clar, roxi AZM, CLR, RXT I Streptococcus groups A, B, C, G Breakpoints
30 genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ eryt ERY R azit, clar, roxi AZM, CLR, RXT R Streptococcus groups A, B, C, G Breakpoints
31 genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G)$ tetr TCY S doxy, mino DOX, MNO S Streptococcus groups A, B, C, G Breakpoints
32 genus_species is Streptococcus pneumoniae peni PEN S ampi, amox, amcl, pipe, pita AMP, AMX, AMC, PIP, TZP S Streptococcus pneumoniae Breakpoints
33 genus_species is Streptococcus pneumoniae ampi AMP S amox, amcl, pipe, pita AMX, AMC, PIP, TZP S Streptococcus pneumoniae Breakpoints
34 genus_species is Streptococcus pneumoniae ampi AMP I amox, amcl, pipe, pita AMX, AMC, PIP, TZP I Streptococcus pneumoniae Breakpoints
35 genus_species is Streptococcus pneumoniae ampi AMP R amox, amcl, pipe, pita AMX, AMC, PIP, TZP R Streptococcus pneumoniae Breakpoints
36 genus_species is Streptococcus pneumoniae norf NOR S levo, moxi LVX, MFX S Streptococcus pneumoniae Breakpoints
37 genus_species is Streptococcus pneumoniae eryt ERY S azit, clar, roxi AZM, CLR, RXT S Streptococcus pneumoniae Breakpoints
38 genus_species is Streptococcus pneumoniae eryt ERY I azit, clar, roxi AZM, CLR, RXT I Streptococcus pneumoniae Breakpoints
39 genus_species is Streptococcus pneumoniae eryt ERY R azit, clar, roxi AZM, CLR, RXT R Streptococcus pneumoniae Breakpoints
40 genus_species is Streptococcus pneumoniae tetr TCY S doxy, mino DOX, MNO S Streptococcus pneumoniae Breakpoints
41 genus_species like ^Streptococcus (australis|bovis|constellatus|cristatus|gallolyticus|gordonii|infantarius|infantis|mitis|mutans|oligofermentans|oralis|peroris|pseudopneumoniae|salivarius|sinensis|sobrinus|thermophilus|vestibularis|anginosus|equinus|intermedius|parasanguinis|sanguinis)$ peni PEN S ampi, amox, amcl, pipe, pita AMP, AMX, AMC, PIP, TZP S Viridans group streptococci Breakpoints
42 genus_species like ^Streptococcus (australis|bovis|constellatus|cristatus|gallolyticus|gordonii|infantarius|infantis|mitis|mutans|oligofermentans|oralis|peroris|pseudopneumoniae|salivarius|sinensis|sobrinus|thermophilus|vestibularis|anginosus|equinus|intermedius|parasanguinis|sanguinis)$ ampi AMP S amox, amcl, pipe, pita AMX, AMC, PIP, TZP S Viridans group streptococci Breakpoints
43 genus_species like ^Streptococcus (australis|bovis|constellatus|cristatus|gallolyticus|gordonii|infantarius|infantis|mitis|mutans|oligofermentans|oralis|peroris|pseudopneumoniae|salivarius|sinensis|sobrinus|thermophilus|vestibularis|anginosus|equinus|intermedius|parasanguinis|sanguinis)$ ampi AMP I amox, amcl, pipe, pita AMX, AMC, PIP, TZP I Viridans group streptococci Breakpoints
44 genus_species like ^Streptococcus (australis|bovis|constellatus|cristatus|gallolyticus|gordonii|infantarius|infantis|mitis|mutans|oligofermentans|oralis|peroris|pseudopneumoniae|salivarius|sinensis|sobrinus|thermophilus|vestibularis|anginosus|equinus|intermedius|parasanguinis|sanguinis)$ ampi AMP R amox, amcl, pipe, pita AMX, AMC, PIP, TZP R Viridans group streptococci Breakpoints
45 genus_species is Haemophilus influenzae ampi AMP S amox, pipe AMX, PIP S Haemophilus influenzae Breakpoints
46 genus_species is ^Haemophilus influenzae ampi AMP I amox, pipe AMX, PIP I Haemophilus influenzae Breakpoints
47 genus_species is Haemophilus influenzae ampi AMP R amox, pipe AMX, PIP R Haemophilus influenzae Breakpoints
48 genus_species is Haemophilus influenzae peni PEN S ampi, amox, amcl, pipe, pita AMP, AMX, AMC, PIP, TZP S Haemophilus influenzae Breakpoints
49 genus_species is Haemophilus influenzae amcl AMC S pita TZP S Haemophilus influenzae Breakpoints
50 genus_species is Haemophilus influenzae amcl AMC I pita TZP I Haemophilus influenzae Breakpoints
51 genus_species is Haemophilus influenzae amcl AMC R pita TZP R Haemophilus influenzae Breakpoints
52 genus_species is Haemophilus influenzae nali NAL S cipr, levo, moxi, oflo CIP, LVX, MFX, OFX S Haemophilus influenzae Breakpoints
53 genus_species is Haemophilus influenzae tetr TCY S doxy, mino DOX, MNO S Haemophilus influenzae Breakpoints
54 genus_species is Moraxella catarrhalis amcl AMC S pita TZP S Moraxella catarrhalis Breakpoints
55 genus_species is Moraxella catarrhalis amcl AMC I pita TZP I Moraxella catarrhalis Breakpoints
56 genus_species is Moraxella catarrhalis amcl AMC R pita TZP R Moraxella catarrhalis Breakpoints
57 genus_species is Moraxella catarrhalis nali NAL S cipr, levo, moxi, oflo CIP, LVX, MFX, OFX S Moraxella catarrhalis Breakpoints
58 genus_species is Moraxella catarrhalis eryt ERY S azit, clar, roxi AZM, CLR, RXT S Moraxella catarrhalis Breakpoints
59 genus_species is Moraxella catarrhalis eryt ERY I azit, clar, roxi AZM, CLR, RXT I Moraxella catarrhalis Breakpoints
60 genus_species is Moraxella catarrhalis eryt ERY R azit, clar, roxi AZM, CLR, RXT R Moraxella catarrhalis Breakpoints
61 genus_species is Moraxella catarrhalis tetr TCY S doxy, mino DOX, MNO S Moraxella catarrhalis Breakpoints
62 genus one_of Actinomyces, Bifidobacterium, Clostridium, Cutibacterium, Eggerthella, Eubacterium, Lactobacillus , Propionibacterium Actinomyces, Bifidobacterium, Clostridium, Cutibacterium, Eggerthella, Eubacterium, Lactobacillus, Propionibacterium peni PEN S ampi, amox, pipe, pita, tica AMP, AMX, PIP, TZP, TIC S Anaerobic Gram positives Breakpoints
63 genus one_of Actinomyces, Bifidobacterium, Clostridium, Cutibacterium, Eggerthella, Eubacterium, Lactobacillus , Propionibacterium Actinomyces, Bifidobacterium, Clostridium, Cutibacterium, Eggerthella, Eubacterium, Lactobacillus, Propionibacterium peni PEN I ampi, amox, pipe, pita, tica AMP, AMX, PIP, TZP, TIC I Anaerobic Gram positives Breakpoints
64 genus one_of Actinomyces, Bifidobacterium, Clostridium, Cutibacterium, Eggerthella, Eubacterium, Lactobacillus , Propionibacterium Actinomyces, Bifidobacterium, Clostridium, Cutibacterium, Eggerthella, Eubacterium, Lactobacillus, Propionibacterium peni PEN R ampi, amox, pipe, pita, tica AMP, AMX, PIP, TZP, TIC R Anaerobic Gram positives Breakpoints
65 genus one_of Bacteroides, Bilophila , Fusobacterium, Mobiluncus, Porphyromonas, Prevotella peni PEN S ampi, amox, pipe, pita, tica AMP, AMX, PIP, TZP, TIC S Anaerobic Gram negatives Breakpoints
66 genus one_of Bacteroides, Bilophila , Fusobacterium, Mobiluncus, Porphyromonas, Prevotella peni PEN I ampi, amox, pipe, pita, tica AMP, AMX, PIP, TZP, TIC I Anaerobic Gram negatives Breakpoints
67 genus one_of Bacteroides, Bilophila , Fusobacterium, Mobiluncus, Porphyromonas, Prevotella peni PEN R ampi, amox, pipe, pita, tica AMP, AMX, PIP, TZP, TIC R Anaerobic Gram negatives Breakpoints
68 genus_species is Pasteurella multocida peni PEN S ampi, amox AMP, AMX S Pasteurella multocida Breakpoints
69 genus_species is Pasteurella multocida peni PEN I ampi, amox AMP, AMX I Pasteurella multocida Breakpoints
70 genus_species is Pasteurella multocida peni PEN R ampi, amox AMP, AMX R Pasteurella multocida Breakpoints
71 genus_species is Campylobacter coli eryt ERY S azit, clar AZM, CLR S Campylobacter coli Breakpoints
72 genus_species is Campylobacter coli eryt ERY I azit, clar AZM, CLR I Campylobacter coli Breakpoints
73 genus_species is Campylobacter coli eryt ERY R azit, clar AZM, CLR R Campylobacter coli Breakpoints
74 genus_species is Campylobacter coli tetr TCY S doxy DOX S Campylobacter coli Breakpoints
75 genus_species is Campylobacter coli tetr TCY I doxy DOX I Campylobacter coli Breakpoints
76 genus_species is Campylobacter coli tetr TCY R doxy DOX R Campylobacter coli Breakpoints
77 genus_species is Campylobacter jejuni eryt ERY S azit, clar AZM, CLR S Campylobacter jejuni Breakpoints
78 genus_species is Campylobacter jejuni eryt ERY I azit, clar AZM, CLR I Campylobacter jejuni Breakpoints
79 genus_species is Campylobacter jejuni eryt ERY R azit, clar AZM, CLR R Campylobacter jejuni Breakpoints
80 genus_species is Campylobacter jejuni tetr TCY S doxy DOX S Campylobacter jejuni Breakpoints
81 genus_species is Campylobacter jejuni tetr TCY I doxy DOX I Campylobacter jejuni Breakpoints
82 genus_species is Campylobacter jejuni tetr TCY R doxy DOX R Campylobacter jejuni Breakpoints
83 genus_species is Aerococcus sanguinicola norf NOR S fluoroquinolones S Aerococcus sanguinicola Breakpoints
84 genus_species is Aerococcus sanguinicola norf NOR I fluoroquinolones I Aerococcus sanguinicola Breakpoints
85 genus_species is Aerococcus sanguinicola norf NOR R fluoroquinolones R Aerococcus sanguinicola Breakpoints
86 genus_species is Aerococcus sanguinicola cipr CIP S levo LVX S Aerococcus sanguinicola Breakpoints
87 genus_species is Aerococcus sanguinicola cipr CIP I levo LVX I Aerococcus sanguinicola Breakpoints
88 genus_species is Aerococcus sanguinicola cipr CIP R levo LVX R Aerococcus urinae Breakpoints
89 genus_species is Aerococcus urinae norf NOR S fluoroquinolones S Aerococcus urinae Breakpoints
90 genus_species is Aerococcus urinae norf NOR I fluoroquinolones I Aerococcus urinae Breakpoints
91 genus_species is Aerococcus urinae norf NOR R fluoroquinolones R Aerococcus urinae Breakpoints
92 genus_species is Aerococcus urinae cipr CIP S levo LVX S Aerococcus urinae Breakpoints
93 genus_species is Aerococcus urinae cipr CIP I levo LVX I Aerococcus urinae Breakpoints
94 genus_species is Aerococcus urinae cipr CIP R levo LVX R Aerococcus urinae Breakpoints
95 genus_species is Kingella kingae peni PEN S ampi, amox AMP, AMX S Kingella kingae Breakpoints
96 genus_species is Kingella kingae peni PEN I ampi, amox AMP, AMX I Kingella kingae Breakpoints
97 genus_species is Kingella kingae peni PEN R ampi, amox AMP, AMX R Kingella kingae Breakpoints
98 genus_species is Kingella kingae eryt ERY S azit, clar AZM, CLR S Kingella kingae Breakpoints
99 genus_species is Kingella kingae eryt ERY I azit, clar AZM, CLR I Kingella kingae Breakpoints
100 genus_species is Kingella kingae eryt ERY R azit, clar AZM, CLR R Kingella kingae Breakpoints
101 genus_species is Kingella kingae tetr TCY S doxy DOX S Kingella kingae Breakpoints
102 family is Enterobacteriaceae peni, glycopeptides, fusi, macrolides, linc, streptogramins, rifa, dapt, line PEN, glycopeptides, FUS, macrolides, LIN, streptogramins, RIF, DAP, LNZ R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
103 fullname like ^Citrobacter (koseri|amalonaticus|sedlakii|farmeri|rodentium) aminopenicillins, tica aminopenicillins, TIC R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
104 fullname like ^Citrobacter (freundii|braakii|murliniae|werkmanii|youngae) aminopenicillins, amcl, czol, cfox aminopenicillins, AMC, CZO, FOX R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
105 genus_species is Enterobacter cloacae aminopenicillins, amcl, czol, cfox aminopenicillins, AMC, CZO, FOX R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
106 genus_species is Enterobacter aerogenes aminopenicillins, amcl, czol, cfox aminopenicillins, AMC, CZO, FOX R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
107 genus_species is Escherichia hermanni aminopenicillins, tica aminopenicillins, TIC R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
108 genus_species is Hafnia alvei aminopenicillins, amcl, czol, cfox aminopenicillins, AMC, CZO, FOX R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
109 genus is Klebsiella aminopenicillins, tica aminopenicillins, TIC R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
110 genus_species is Morganella morganii aminopenicillins, amcl, czol, tetracyclines, polymyxins, nitr aminopenicillins, AMC, CZO, tetracyclines, polymyxins, NIT R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
111 genus_species is Proteus mirabilis tetracyclines, tige, polymyxins, nitr tetracyclines, TGC, polymyxins, NIT R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
112 genus_species is Proteus penneri aminopenicillins, czol, cfur, tetracyclines, tige, polymyxins, nitr aminopenicillins, CZO, CXM, tetracyclines, TGC, polymyxins, NIT R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
113 genus_species is Proteus vulgaris aminopenicillins, czol, cfur, tetracyclines, tige, polymyxins, nitr aminopenicillins, CZO, CXM, tetracyclines, TGC, polymyxins, NIT R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
114 genus_species is Providencia rettgeri aminopenicillins, amcl, czol, cfur, tetracyclines, tige, polymyxins, nitr aminopenicillins, AMC, CZO, CXM, tetracyclines, TGC, polymyxins, NIT R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
115 genus_species is Providencia stuartii aminopenicillins, amcl, czol, cfur, tetracyclines, tige, polymyxins, nitr aminopenicillins, AMC, CZO, CXM, tetracyclines, TGC, polymyxins, NIT R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
116 genus is Raoultella aminopenicillins, tica aminopenicillins, TIC R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
117 genus_species is Serratia marcescens aminopenicillins, amcl, czol, cfox, cfur, tetracyclines[tetracyclines != na.rm(mino)], polymyxins, nitr aminopenicillins, AMC, CZO, FOX, CXM, DOX, TCY, polymyxins, NIT R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
118 genus_species is Yersinia enterocolitica aminopenicillins, amcl, tica, czol, cfox aminopenicillins, AMC, TIC, CZO, FOX R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
119 genus_species is Yersinia pseudotuberculosis poly, coli poly, COL R Table 01: Intrinsic resistance in Enterobacteriaceae Expert Rules
120 genus one_of Achromobacter, Acinetobacter, Alcaligenes, Bordatella, Burkholderia, Elizabethkingia, Flavobacterium, Ochrobactrum, Pseudomonas, Stenotrophomonas peni, cfox, cfur, glycopeptides, fusi, macrolides, linc, streptogramins, rifa, dapt, line PEN, FOX, CXM, glycopeptides, FUS, macrolides, LIN, streptogramins, RIF, DAP, LNZ R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
121 genus_species is Acinetobacter baumannii aminopenicillins, amcl, czol, cfot, cftr, aztr, erta, trim, fosf, doxy, tetr aminopenicillins, AMC, CZO, CTX, CRO, ATM, ETP, TMP, FOS, DOX, TCY R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
122 genus_species is Acinetobacter pittii aminopenicillins, amcl, czol, cfot, cftr, aztr, erta, trim, fosf, doxy, tetr aminopenicillins, AMC, CZO, CTX, CRO, ATM, ETP, TMP, FOS, DOX, TCY R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
123 genus_species is Acinetobacter nosocomialis aminopenicillins, amcl, czol, cfot, cftr, aztr, erta, trim, fosf, doxy, tetr aminopenicillins, AMC, CZO, CTX, CRO, ATM, ETP, TMP, FOS, DOX, TCY R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
124 genus_species is Acinetobacter calcoaceticus aminopenicillins, amcl, czol, cfot, cftr, aztr, erta, trim, fosf, doxy, tetr aminopenicillins, AMC, CZO, CTX, CRO, ATM, ETP, TMP, FOS, DOX, TCY R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
125 genus_species is Achromobacter xylosoxidans aminopenicillins, czol, cfot, cftr, erta aminopenicillins, CZO, CTX, CRO, ETP R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
126 fullname like ^Burkholderia (cepacia|multivorans|cenocepacia|stabilis|vietnamiensis|dolosa|ambifaria|anthina|pyrrocinia|ubonensis) aminopenicillins, amcl, tica, pipe, pita, czol, cfot, cftr, aztr, erta, cipr, chlo, aminoglycosides, trim, fosf, polymyxins aminopenicillins, AMC, TIC, PIP, TZP, CZO, CTX, CRO, ATM, ETP, CIP, CHL, aminoglycosides, TMP, FOS, polymyxins R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
127 genus_species is Elizabethkingia meningoseptica aminopenicillins, amcl, tica, czol, cfot, cftr, cfta, cfep, aztr, erta, imip, mero, polymyxins aminopenicillins, AMC, TIC, CZO, CTX, CRO, CAZ, FEP, ATM, ETP, IPM, MEM, polymyxins R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
128 genus_species is Ochrobactrum anthropi aminopenicillins, amcl, tica, pipe, pita, czol, cfot, cftr, cfta, cfep, aztr, erta aminopenicillins, AMC, TIC, PIP, TZP, CZO, CTX, CRO, CAZ, FEP, ATM, ETP R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
129 genus_species is Pseudomonas aeruginosa aminopenicillins, amcl, czol, cfot, cftr, erta, chlo, kana, neom, trim, trsu, tetracyclines, tige aminopenicillins, AMC, CZO, CTX, CRO, ETP, CHL, KAN, NEO, TMP, SXT, tetracyclines, TGC R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
130 genus_species is Stenotrophomonas maltophilia aminopenicillins, amcl, tica, pipe, pita, czol, cfot, cftr, cfta, aztr, erta, imip, mero, aminoglycosides, trim, fosf, tetr aminopenicillins, AMC, TIC, PIP, TZP, CZO, CTX, CRO, CAZ, ATM, ETP, IPM, MEM, aminoglycosides, TMP, FOS, TCY R Table 02: Intrinsic resistance in non-fermentative Gram-negative bacteria Expert Rules
131 genus one_of Haemophilus, Moraxella, Neisseria, Campylobacter glycopeptides, linc, dapt, line glycopeptides, LIN, DAP, LNZ R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
132 genus_species is Haemophilus influenzae fusi, streptogramins FUS, streptogramins R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
133 genus_species is Moraxella catarrhalis trim TMP R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
134 genus is Neisseria trim TMP R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
135 genus_species is Campylobacter fetus fusi, streptogramins, trim, nali FUS, streptogramins, TMP, NAL R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
136 genus_species is Campylobacter jejuni fusi, streptogramins, trim FUS, streptogramins, TMP R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
137 genus_species is Campylobacter coli fusi, streptogramins, trim FUS, streptogramins, TMP R Table 03: Intrinsic resistance in other Gram-negative bacteria Expert Rules
138 gramstain is Gram positive aztr, polymyxins, nali ATM, polymyxins, NAL R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
139 genus_species is Staphylococcus saprophyticus fusi, cfta, fosf, novo FUS, CAZ, FOS, NOV R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
140 genus_species is Staphylococcus cohnii cfta, novo CAZ, NOV R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
141 genus_species is Staphylococcus xylosus cfta, novo CAZ, NOV R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
142 genus_species is Staphylococcus capitis cfta, fosf CAZ, FOS R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
143 genus_species is Staphylococcus aureus cfta CAZ R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
144 genus_species is Staphylococcus epidermidis cfta CAZ R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
145 genus_species is Staphylococcus coagulase-negative cfta CAZ R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
146 genus_species is Staphylococcus hominis cfta CAZ R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
147 genus_species is Staphylococcus haemolyticus cfta CAZ R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
148 genus_species is Staphylococcus intermedius cfta CAZ R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
149 genus_species is Staphylococcus pseudintermedius cfta CAZ R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
150 genus is Streptococcus fusi, cfta, aminoglycosides FUS, CAZ, aminoglycosides R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
151 genus_species is Enterococcus faecalis fusi, cfta, cephalosporins_without_cfta, aminoglycosides, macrolides, clin, qida, trim, trsu FUS, CAZ, cephalosporins_without_CAZ, aminoglycosides, macrolides, CLI, QDA, TMP, SXT R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
152 genus_species is Enterococcus gallinarum fusi, cfta, cephalosporins_without_cfta, aminoglycosides, macrolides, clin, qida, vanc, trim, trsu FUS, CAZ, cephalosporins_without_CAZ, aminoglycosides, macrolides, CLI, QDA, VAN, TMP, SXT R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
153 genus_species is Enterococcus casseliflavus fusi, cfta, cephalosporins_without_cfta, aminoglycosides, macrolides, clin, qida, vanc, trim, trsu FUS, CAZ, cephalosporins_without_CAZ, aminoglycosides, macrolides, CLI, QDA, VAN, TMP, SXT R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
154 genus_species is Enterococcus faecium fusi, cfta, cephalosporins_without_cfta, aminoglycosides, macrolides, trim, trsu FUS, CAZ, cephalosporins_without_CAZ, aminoglycosides, macrolides, TMP, SXT R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
155 genus is Corynebacterium fosf FOS R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
156 genus_species is Listeria monocytogenes cephalosporins R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
157 genus is Leuconostoc, Pediococcus glycopeptides R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
158 genus is Lactobacillus glycopeptides R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
159 genus_species is Clostridium ramosum vanc VAN R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
160 genus_species is Clostridium innocuum vanc VAN R Table 04: Intrinsic resistance in Gram-positive bacteria Expert Rules
161 genus_species like ^Streptococcus (pyogenes|agalactiae|dysgalactiae|group A|group B|group C|group G) peni PEN S aminopenicillins, cephalosporins, carbapenems aminopenicillins, cephalosporins_without_CAZ, carbapenems S Table 08: Interpretive rules for B-lactam agents and Gram-positive cocci Expert Rules
162 genus is Enterococcus ampi AMP R ureidopenicillins, carbapenems R Table 08: Interpretive rules for B-lactam agents and Gram-positive cocci Expert Rules
163 genus is Enterococcus amox AMX R ureidopenicillins, carbapenems R Table 08: Interpretive rules for B-lactam agents and Gram-positive cocci Expert Rules
164 family is Enterobacteriaceae tica, pipe TIC, PIP R, S pipe PIP R Table 09: Interpretive rules for B-lactam agents and Gram-negative rods Expert Rules
165 genus is .* eryt ERY S azit, clar AZM, CLR S Table 11: Interpretive rules for macrolides, lincosamides, and streptogramins Expert Rules
166 genus is .* eryt ERY I azit, clar AZM, CLR I Table 11: Interpretive rules for macrolides, lincosamides, and streptogramins Expert Rules
167 genus is .* eryt ERY R azit, clar AZM, CLR R Table 11: Interpretive rules for macrolides, lincosamides, and streptogramins Expert Rules
168 genus is Staphylococcus tobr TOB R kana, amik KAN, amik R Table 12: Interpretive rules for aminoglycosides Expert Rules
169 genus is Staphylococcus gent GEN R aminoglycosides R Table 12: Interpretive rules for aminoglycosides Expert Rules
170 family is Enterobacteriaceae gent, tobr GEN, TOB I, S gent GEN R Table 12: Interpretive rules for aminoglycosides Expert Rules
171 family is Enterobacteriaceae gent, tobr GEN, TOB R, I tobr TOB R Table 12: Interpretive rules for aminoglycosides Expert Rules
172 genus is Staphylococcus moxi MFX R fluoroquinolones R Table 13: Interpretive rules for quinolones Expert Rules
173 genus_species is Streptococcus pneumoniae moxi MFX R fluoroquinolones R Table 13: Interpretive rules for quinolones Expert Rules
174 family is Enterobacteriaceae cipr CIP R fluoroquinolones R Table 13: Interpretive rules for quinolones Expert Rules
175 genus_species is Neisseria gonorrhoeae cipr CIP R fluoroquinolones R Table 13: Interpretive rules for quinolones Expert Rules
176 genus is .* amcl AMC R ampi, amox AMP, AMX R Non-EUCAST: ampicillin = R where amoxicillin/clav acid = R Other rules
177 genus is .* pita TZP R pipe PIP R Non-EUCAST: piperacillin = R where piperacillin/tazobactam = R Other rules
178 genus is .* trsu SXT R trim TMP R Non-EUCAST: trimethoprim = R where trimethoprim/sulfa = R Other rules
179 genus is .* ampi AMP S amcl AMC S Non-EUCAST: amoxicillin/clav acid = S where ampicillin = S Other rules
180 genus is .* amox AMX S amcl AMC S Non-EUCAST: amoxicillin/clav acid = S where ampicillin = S Other rules
181 genus is .* pipe PIP S pita TZP S Non-EUCAST: piperacillin/tazobactam = S where piperacillin = S Other rules
182 genus is .* trim TMP S trsu SXT S Non-EUCAST: trimethoprim/sulfa = S where trimethoprim = S Other rules