new antibiotics

man/as.disk.Rd

@@ -0,0 +1,45 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/disk.R
+\name{as.disk}
+\alias{as.disk}
+\alias{is.disk}
+\title{Class 'disk'}
+\usage{
+as.disk(x, na.rm = FALSE)
+
+is.disk(x)
+}
+\arguments{
+\item{x}{vector}
+
+\item{na.rm}{a logical indicating whether missing values should be removed}
+}
+\value{
+Ordered integer factor with new class \code{disk}
+}
+\description{
+This transforms a vector to a new class \code{disk}, which is a growth zone size (around an antibiotic disk) in millimeters between 6 and 99.
+}
+\details{
+Interpret disk values as RSI values with \code{\link{as.rsi}}. It supports guidelines from EUCAST and CLSI.
+}
+\section{Read more on our website!}{
+
+On our website \url{https://msberends.gitlab.io/AMR} you can find \href{https://msberends.gitlab.io/AMR/articles/AMR.html}{a comprehensive tutorial} about how to conduct AMR analysis, the \href{https://msberends.gitlab.io/AMR/reference}{complete documentation of all functions} (which reads a lot easier than here in R) and \href{https://msberends.gitlab.io/AMR/articles/WHONET.html}{an example analysis using WHONET data}.
+}
+
+\examples{
+# interpret disk values
+as.rsi(x = 12,
+       mo = as.mo("S. pneumoniae"),
+       ab = "AMX",
+       guideline = "EUCAST")
+as.rsi(x = 12,
+       mo = as.mo("S. pneumoniae"),
+       ab = "AMX",
+       guideline = "CLSI")
+}
+\seealso{
+\code{\link{as.rsi}}
+}
+\keyword{disk}