P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-09-06 06:49:41 +02:00
Code Releases Activity

new antibiotics

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2019-05-10 16:44:59 +02:00
parent 73f1ee1159
commit 68cc7ef0d0
147 changed files with 6228 additions and 4187 deletions
Download Patch File Download Diff File Expand all files Collapse all files

10
man/first_isolate.Rd
View File

@@ -124,14 +124,14 @@ septic_patients \%>\%
# Now let's see if first isolates matter:
A <- septic_patients \%>\%
group_by(hospital_id) \%>\%
summarise(count = n_rsi(gent), # gentamicin availability
resistance = portion_IR(gent)) # gentamicin resistance
summarise(count = n_rsi(GEN), # gentamicin availability
resistance = portion_IR(GEN)) # gentamicin resistance
B <- septic_patients \%>\%
filter_first_weighted_isolate() \%>\% # the 1st isolate filter
filter_first_weighted_isolate() \%>\% # the 1st isolate filter
group_by(hospital_id) \%>\%
summarise(count = n_rsi(gent), # gentamicin availability
resistance = portion_IR(gent)) # gentamicin resistance
summarise(count = n_rsi(GEN), # gentamicin availability
resistance = portion_IR(GEN)) # gentamicin resistance
# Have a look at A and B.
# B is more reliable because every isolate is only counted once.