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new antibiotics

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dr. M.S. (Matthijs) Berends
2019-05-10 16:44:59 +02:00
parent 73f1ee1159
commit 68cc7ef0d0
147 changed files with 6228 additions and 4187 deletions
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6
man/resistance_predict.Rd
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@ -86,7 +86,7 @@ On our website \url{https://msberends.gitlab.io/AMR} you can find \href{https://
}
\examples{
x <- resistance_predict(septic_patients, col_ab = "amox", year_min = 2010)
x <- resistance_predict(septic_patients, col_ab = "AMX", year_min = 2010)
plot(x)
ggplot_rsi_predict(x)
@ -95,7 +95,7 @@ library(dplyr)
x <- septic_patients \%>\%
filter_first_isolate() \%>\%
filter(mo_genus(mo) == "Staphylococcus") \%>\%
resistance_predict("peni")
resistance_predict("PEN")
plot(x)
@ -109,7 +109,7 @@ if (!require(ggplot2)) {
data <- septic_patients \%>\%
filter(mo == as.mo("E. coli")) \%>\%
resistance_predict(col_ab = "amox",
resistance_predict(col_ab = "AMX",
col_date = "date",
info = FALSE,
minimum = 15)