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(v1.3.0.9034) eucast_rules summary fix

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dr. M.S. (Matthijs) Berends
2020-09-29 10:40:25 +02:00
parent 36ec8b0d81
commit 68e6e1e329
20 changed files with 83 additions and 44 deletions
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6
tests/testthat/test-rsi.R
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@@ -97,6 +97,12 @@ test_that("mic2rsi works", {
guideline = "EUCAST")),
"I")
# cutoffs at MIC = 8
expect_equal(as.rsi(as.mic(2), "E. coli", "ampicillin", guideline = "EUCAST 2020"),
as.rsi("S"))
expect_equal(as.rsi(as.mic(32), "E. coli", "ampicillin", guideline = "EUCAST 2020"),
as.rsi("R"))
expect_true(example_isolates %>%
mutate(amox_mic = as.mic(2)) %>%
select(mo, amox_mic) %>%