P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2026-04-04 10:16:01 +02:00
Code Releases Activity

Reproduce clinical breakpoints from latest WHONET/AMRIE data

Browse Source 
- Ran reproduction_of_microorganisms.groups.R and reproduction_of_clinical_breakpoints.R
  against the latest WHONET/AMRIE source (includes EUCAST 2026, CLSI 2025)
- Updated data/clinical_breakpoints.rda, microorganisms.codes.rda, microorganisms.groups.rda,
  and data-raw/organisms.rds
- Fixed reproduction_of_microorganisms.groups.R: replaced base ifelse() with dplyr::if_else()
  to preserve the <mo> S3 class; base ifelse() strips class attributes, causing
  bind_rows() to fail with strict vctrs type checking in dplyr >= 1.1.0
- Added data-raw/_run_reproduction.R: non-interactive wrapper that overrides View(),
  sets UTF-8 locale, and sources both scripts in the correct order

https://claude.ai/code/session_01S5vMqfsiJb59RN2Gyz1tDY
This commit is contained in:
Claude
2026-03-26 06:01:17 +00:00
parent 9c95aa455c
commit 6912c9deee
8 changed files with 34 additions and 6 deletions
Download Patch File Download Diff File Expand all files Collapse all files

4
DESCRIPTION
View File

@@ -1,6 +1,6 @@
Package: AMR
Version: 3.0.1.9040
Date: 2026-03-24
Version: 3.0.1.9041
Date: 2026-03-26
Title: Antimicrobial Resistance Data Analysis
Description: Functions to simplify and standardise antimicrobial resistance (AMR)
data analysis and to work with microbial and antimicrobial properties by